Wall clock time and date at job start Tue Mar 31 2020 07:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 120.00126 * 2 1 4 4 C 1.53003 * 109.46880 * 270.00207 * 3 2 1 5 5 N 1.46901 * 109.46868 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00149 * 179.97438 * 2 1 3 7 7 O 1.21596 * 120.00015 * 179.97438 * 6 2 1 8 8 N 1.34771 * 120.00181 * 0.02562 * 6 2 1 9 9 C 1.46500 * 120.00556 * 179.97438 * 8 6 2 10 10 H 1.09009 * 109.46624 * 324.99750 * 9 8 6 11 11 C 1.52996 * 109.47466 * 205.00158 * 9 8 6 12 12 C 1.50702 * 109.47159 * 64.99479 * 11 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.50700 * 109.47471 * 84.99708 * 9 8 6 21 21 C 1.38233 * 119.99377 * 39.72808 * 20 9 8 22 22 C 1.38237 * 119.99600 * 179.78842 * 21 20 9 23 23 C 1.38241 * 119.99990 * 0.44354 * 22 21 20 24 24 C 1.38237 * 119.99716 * 359.81238 * 23 22 21 25 25 C 1.38228 * 120.00326 * 220.00479 * 20 9 8 26 26 H 1.09000 * 109.46930 * 269.99920 * 1 2 3 27 27 H 1.09004 * 109.47278 * 30.00401 * 1 2 3 28 28 H 1.09000 * 109.46593 * 150.00226 * 1 2 3 29 29 H 1.08997 * 109.46532 * 29.99891 * 3 2 1 30 30 H 1.08992 * 109.46992 * 149.99646 * 3 2 1 31 31 H 1.09008 * 109.46827 * 299.99345 * 4 3 2 32 32 H 1.08992 * 109.47377 * 59.99539 * 4 3 2 33 33 H 1.00900 * 110.99961 * 56.03815 * 5 4 3 34 34 H 1.00901 * 110.99642 * 179.97438 * 5 4 3 35 35 H 0.97002 * 120.00072 * 359.97438 * 8 6 2 36 36 H 1.09004 * 109.47066 * 304.99682 * 11 9 8 37 37 H 1.08994 * 109.47405 * 184.99512 * 11 9 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 39 39 H 1.07995 * 120.00514 * 359.97438 * 21 20 9 40 40 H 1.08001 * 120.00058 * 180.28006 * 22 21 20 41 41 H 1.07995 * 120.00194 * 179.83256 * 23 22 21 42 42 H 1.08001 * 119.99824 * 180.02562 * 24 23 22 43 43 H 1.08005 * 119.99906 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1875 2.9823 -1.4425 6 6 2.1389 -1.1672 0.0005 7 8 3.3548 -1.1671 0.0001 8 7 1.4651 -2.3344 0.0005 9 6 2.1975 -3.6031 0.0005 10 1 3.1083 -3.4968 -0.5890 11 6 1.3204 -4.6985 -0.6091 12 6 1.0635 -4.3864 -2.0609 13 1 1.4841 -3.4960 -2.5045 14 6 0.2965 -5.2407 -2.8245 15 7 -0.2153 -6.3251 -2.2843 16 14 -0.0155 -4.8578 -4.6259 17 1 0.6664 -3.5893 -4.9877 18 1 0.5152 -5.9617 -5.4658 19 1 -1.4759 -4.7185 -4.8567 20 6 2.5560 -3.9763 1.4159 21 6 1.6494 -3.7633 2.4374 22 6 1.9766 -4.1097 3.7351 23 6 3.2138 -4.6605 4.0126 24 6 4.1223 -4.8685 2.9917 25 6 3.7935 -4.5262 1.6934 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3632 -0.8900 -0.5138 29 1 1.6084 2.0283 0.5138 30 1 3.1498 1.1384 0.5139 31 1 3.0417 0.9507 -1.9564 32 1 1.5001 1.8407 -1.9564 33 1 4.0450 2.9044 -0.9165 34 1 3.3687 3.2952 -2.3846 35 1 0.4951 -2.3344 0.0005 36 1 0.3719 -4.7443 -0.0740 37 1 1.8297 -5.6587 -0.5286 38 1 -0.7552 -6.9260 -2.8215 39 1 0.6845 -3.3292 2.2214 40 1 1.2666 -3.9475 4.5326 41 1 3.4704 -4.9285 5.0268 42 1 5.0888 -5.2992 3.2083 43 1 4.5033 -4.6888 0.8958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417923048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:03 Heat of formation + Delta-G solvation = -26.326600 kcal Electronic energy + Delta-G solvation = -23635.505600 eV Core-core repulsion = 20293.500783 eV Total energy + Delta-G solvation = -3342.004817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40530 -39.98877 -37.48827 -36.57609 -35.24486 -34.61484 -32.36771 -31.68040 -30.55655 -29.11623 -27.37023 -26.40091 -23.83295 -23.59043 -23.20048 -21.55947 -20.81022 -19.15899 -18.57611 -17.79545 -17.46006 -16.81418 -16.69162 -16.44955 -16.05613 -15.92064 -15.53363 -14.97268 -14.64448 -14.53519 -14.40538 -14.18074 -14.15231 -13.84534 -13.67033 -13.42220 -13.29808 -12.98239 -12.84211 -12.63430 -12.45489 -12.20987 -12.11218 -11.86933 -11.58848 -11.32299 -11.19957 -10.60185 -10.11577 -9.77556 -9.74673 -9.55228 -9.44463 -8.21291 -6.31173 0.52100 0.56920 1.36335 1.39285 1.50476 1.72395 2.21235 2.38571 2.92023 3.08980 3.17387 3.72977 3.99131 4.01001 4.04069 4.17136 4.21558 4.29793 4.32579 4.42763 4.52579 4.64937 4.66211 4.73405 4.79303 4.80254 4.89187 5.00960 5.13444 5.20613 5.28908 5.41850 5.55492 5.61878 5.62956 5.65022 5.77170 5.88554 6.03435 6.08172 6.16373 6.21163 6.48830 6.81071 7.05226 7.37568 7.63912 8.89607 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.008211 B = 0.007121 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3409.309995 B = 3931.175275 C = 6573.151006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.631 5.631 3 C 0.140 3.860 4 C 0.052 3.948 5 N -0.842 5.842 6 C 0.699 3.301 7 O -0.637 6.637 8 N -0.711 5.711 9 C 0.217 3.783 10 H 0.053 0.947 11 C 0.039 3.961 12 C -0.527 4.527 13 H 0.049 0.951 14 C 0.012 3.988 15 N -0.924 5.924 16 Si 0.956 3.044 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.273 1.273 20 C -0.098 4.098 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.133 4.133 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.001 0.999 32 H 0.078 0.922 33 H 0.346 0.654 34 H 0.352 0.648 35 H 0.403 0.597 36 H 0.013 0.987 37 H 0.005 0.995 38 H 0.264 0.736 39 H 0.119 0.881 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.144 0.856 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.435 12.596 9.148 15.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.369 5.369 3 C 0.017 3.983 4 C -0.081 4.081 5 N -0.373 5.373 6 C 0.400 3.600 7 O -0.519 6.519 8 N -0.365 5.365 9 C 0.111 3.889 10 H 0.071 0.929 11 C 0.001 3.999 12 C -0.565 4.565 13 H 0.068 0.932 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.782 3.218 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.099 4.099 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.141 4.141 25 C -0.152 4.152 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.019 0.981 32 H 0.097 0.903 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.241 0.759 36 H 0.031 0.969 37 H 0.023 0.977 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.520 12.741 9.467 15.946 hybrid contribution 0.201 -0.898 -1.892 2.104 sum 1.721 11.843 7.575 14.163 Atomic orbital electron populations 1.21967 0.77610 1.04152 1.03130 1.46997 1.07700 1.04023 1.78137 1.21224 0.97454 0.83355 0.96301 1.22042 0.98731 0.89961 0.97327 1.58707 1.28432 1.29255 1.20912 1.16123 0.84983 0.81361 0.77507 1.90821 1.13565 1.87002 1.60516 1.45071 1.09939 1.03609 1.77858 1.19584 0.94891 0.83147 0.91250 0.92881 1.19131 0.93855 0.92119 0.94770 1.21377 1.31314 1.07814 0.95963 0.93234 1.25755 0.95569 0.94767 1.02565 1.70075 1.35060 1.13418 1.37868 0.85539 0.78123 0.78052 0.80136 1.19661 1.20760 1.19838 1.20486 0.94946 0.98539 0.95927 1.21031 0.99067 1.00558 0.93134 1.21436 0.97725 0.98857 0.96213 1.21466 0.93700 0.99438 1.00124 1.21380 1.00758 0.99947 0.92061 1.21163 0.96047 1.00068 0.97937 0.90828 0.88432 0.91802 0.87364 0.92064 0.98111 0.90339 0.84182 0.83484 0.75935 0.96892 0.97663 0.92679 0.86342 0.83568 0.83064 0.83860 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.53 10.20 127.77 1.30 2.83 16 2 N -0.63 -18.11 2.87 -864.91 -2.49 -20.59 16 3 C 0.14 3.48 5.67 86.38 0.49 3.97 16 4 C 0.05 1.25 7.11 86.30 0.61 1.87 16 5 N -0.84 -16.10 9.62 -186.71 -1.80 -17.90 16 6 C 0.70 26.89 8.24 179.06 1.47 28.37 16 7 O -0.64 -29.39 15.58 -4.02 -0.06 -29.45 16 8 N -0.71 -27.50 3.89 -461.40 -1.79 -29.29 16 9 C 0.22 9.60 2.12 44.24 0.09 9.69 16 10 H 0.05 2.65 7.44 -2.38 -0.02 2.63 16 11 C 0.04 1.97 4.50 29.85 0.13 2.11 16 12 C -0.53 -28.87 8.84 25.60 0.23 -28.64 16 13 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 14 C 0.01 0.67 5.46 84.66 0.46 1.14 16 15 N -0.92 -53.81 13.29 21.45 0.28 -53.52 16 16 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 C -0.10 -3.86 4.91 -19.87 -0.10 -3.96 16 21 C -0.12 -4.10 9.33 22.27 0.21 -3.89 16 22 C -0.12 -3.49 10.05 22.27 0.22 -3.27 16 23 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 24 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 25 C -0.13 -4.93 9.67 22.27 0.22 -4.71 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.10 1.52 8.07 -2.39 -0.02 1.50 16 28 H 0.06 1.48 6.36 -2.39 -0.02 1.46 16 29 H 0.11 2.08 8.07 -2.39 -0.02 2.06 16 30 H 0.06 1.77 7.42 -2.39 -0.02 1.75 16 31 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.35 6.22 8.99 -89.69 -0.81 5.41 16 34 H 0.35 5.66 9.08 -89.69 -0.81 4.84 16 35 H 0.40 14.21 6.33 -92.71 -0.59 13.62 16 36 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 39 H 0.12 3.83 7.71 -2.91 -0.02 3.81 16 40 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 41 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 42 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 43 H 0.11 4.11 8.04 -2.91 -0.02 4.08 16 Total: -1.00 -71.07 360.74 0.78 -70.29 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: -1.18 Total: 36.02 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 5.79 Total: -1.10 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -5.79 Total: -121.30 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.06 Total: -29.45 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.07 0.78 -70.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417923048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.959 kcal (2) G-P(sol) polarization free energy of solvation -71.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds