Wall clock time and date at job start Tue Mar 31 2020 07:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.52999 * 109.47070 * 90.00054 * 3 2 1 5 5 N 1.46896 * 109.47356 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99873 * 180.28195 * 2 1 3 7 7 O 1.21583 * 119.99943 * 179.97438 * 6 2 1 8 8 N 1.34777 * 120.00128 * 359.97438 * 6 2 1 9 9 C 1.46494 * 120.00401 * 180.02562 * 8 6 2 10 10 H 1.09000 * 109.46707 * 35.00079 * 9 8 6 11 11 C 1.52996 * 109.47500 * 155.00136 * 9 8 6 12 12 C 1.50695 * 109.47401 * 295.00243 * 11 9 8 13 13 H 1.08003 * 119.99621 * 0.02562 * 12 11 9 14 14 C 1.37873 * 120.00380 * 179.97438 * 12 11 9 15 15 N 1.31509 * 120.00207 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99970 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47138 * 89.99605 * 16 14 12 18 18 H 1.48500 * 109.47184 * 209.99956 * 16 14 12 19 19 H 1.48501 * 109.47060 * 329.99612 * 16 14 12 20 20 C 1.50703 * 109.47225 * 275.00579 * 9 8 6 21 21 C 1.38242 * 119.99836 * 319.72194 * 20 9 8 22 22 C 1.38236 * 119.99858 * 179.78481 * 21 20 9 23 23 C 1.38236 * 119.99671 * 0.44691 * 22 21 20 24 24 C 1.38227 * 120.00461 * 359.80789 * 23 22 21 25 25 C 1.38230 * 120.00362 * 139.99592 * 20 9 8 26 26 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 27 27 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 28 28 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 29 29 H 1.08993 * 109.47575 * 210.00600 * 3 2 1 30 30 H 1.09001 * 109.46870 * 330.00556 * 3 2 1 31 31 H 1.09002 * 109.47116 * 300.00653 * 4 3 2 32 32 H 1.09001 * 109.47317 * 59.99875 * 4 3 2 33 33 H 1.00894 * 111.00108 * 56.04853 * 5 4 3 34 34 H 1.00899 * 111.00103 * 180.02562 * 5 4 3 35 35 H 0.97000 * 119.99555 * 0.02562 * 8 6 2 36 36 H 1.09003 * 109.46777 * 55.00337 * 11 9 8 37 37 H 1.09002 * 109.47113 * 174.99707 * 11 9 8 38 38 H 0.97003 * 120.00476 * 179.97438 * 15 14 12 39 39 H 1.07997 * 119.99481 * 0.02562 * 21 20 9 40 40 H 1.07997 * 120.00030 * 180.27346 * 22 21 20 41 41 H 1.08008 * 119.99574 * 179.83117 * 23 22 21 42 42 H 1.08001 * 120.00081 * 179.97438 * 24 23 22 43 43 H 1.08007 * 120.00042 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1866 2.9828 1.4426 6 6 2.1389 -1.1672 -0.0057 7 8 3.3547 -1.1672 -0.0062 8 7 1.4650 -2.3344 -0.0110 9 6 2.1974 -3.6031 -0.0166 10 1 3.1081 -3.4995 0.5733 11 6 1.3202 -4.7012 0.5880 12 6 1.0633 -4.3957 2.0411 13 1 1.4833 -3.5069 2.4885 14 6 0.2912 -5.2501 2.7992 15 7 0.0674 -4.9838 4.0674 16 14 -0.4359 -6.7869 2.0252 17 1 0.5180 -7.9153 2.1749 18 1 -1.7133 -7.1254 2.7025 19 1 -0.6902 -6.5418 0.5828 20 6 2.5559 -3.9699 -1.4337 21 6 1.6451 -3.7628 -2.4528 22 6 1.9756 -4.0951 -3.7533 23 6 3.2135 -4.6430 -4.0333 24 6 4.1223 -4.8549 -3.0136 25 6 3.7934 -4.5186 -1.7137 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 0.8925 -0.5094 28 1 -0.3633 -0.8875 -0.5181 29 1 3.1499 1.1384 -0.5139 30 1 1.6085 2.0284 -0.5138 31 1 1.5002 1.8406 1.9564 32 1 3.0417 0.9507 1.9564 33 1 2.6904 3.6864 0.9167 34 1 3.3678 3.2957 2.3845 35 1 0.4950 -2.3343 -0.0110 36 1 0.3717 -4.7445 0.0526 37 1 1.8296 -5.6611 0.5030 38 1 -0.4762 -5.5848 4.6007 39 1 0.6768 -3.3379 -2.2334 40 1 1.2657 -3.9293 -4.5501 41 1 3.4707 -4.9051 -5.0490 42 1 5.0892 -5.2834 -3.2324 43 1 4.5036 -4.6841 -0.9170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417923049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:07 Heat of formation + Delta-G solvation = -0.007782 kcal Electronic energy + Delta-G solvation = -23657.973630 eV Core-core repulsion = 20317.110083 eV Total energy + Delta-G solvation = -3340.863547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.00048 -38.76489 -36.25420 -35.04735 -34.09319 -32.60632 -31.07607 -30.50648 -29.30660 -28.10518 -26.15902 -24.78183 -22.44974 -22.17653 -21.74184 -20.11691 -19.39549 -17.76307 -17.07561 -16.53007 -16.22090 -15.70765 -15.36372 -14.90165 -14.66514 -14.36979 -14.11775 -13.89348 -13.43757 -13.22370 -13.10256 -13.03393 -12.74277 -12.58186 -12.37463 -12.23743 -11.91166 -11.75462 -11.30915 -11.09087 -11.03853 -10.71222 -10.61696 -10.13549 -9.85092 -9.61283 -9.32244 -8.82827 -8.63508 -8.60891 -8.56400 -8.30495 -8.18777 -6.10992 -4.10430 1.71761 1.74696 2.98411 3.25680 3.33758 3.35976 3.69786 4.11972 4.37930 4.40079 4.66438 5.03639 5.15192 5.18698 5.21182 5.22004 5.23088 5.31464 5.47391 5.49403 5.53618 5.76591 5.85245 5.87823 5.92226 6.07005 6.11496 6.27447 6.34118 6.46682 6.69811 6.76939 6.79810 6.86271 6.96213 6.99262 7.07545 7.24851 7.32534 7.34661 7.46104 7.65791 8.42279 8.47167 8.95572 9.10623 9.49938 11.01819 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.009702 B = 0.006414 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.165456 B = 4364.521294 C = 6481.832592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.637 5.637 3 C 0.140 3.860 4 C 0.044 3.956 5 N -0.847 5.847 6 C 0.707 3.293 7 O -0.590 6.590 8 N -0.716 5.716 9 C 0.211 3.789 10 H 0.092 0.908 11 C -0.014 4.014 12 C -0.518 4.518 13 H 0.076 0.924 14 C 0.070 3.930 15 N -0.899 5.899 16 Si 0.875 3.125 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.075 4.075 21 C -0.108 4.108 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.106 4.106 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.079 0.921 33 H 0.336 0.664 34 H 0.343 0.657 35 H 0.396 0.604 36 H 0.022 0.978 37 H 0.030 0.970 38 H 0.263 0.737 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.105 9.371 -12.288 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.376 5.376 3 C 0.016 3.984 4 C -0.088 4.088 5 N -0.377 5.377 6 C 0.408 3.592 7 O -0.468 6.468 8 N -0.369 5.369 9 C 0.106 3.894 10 H 0.110 0.890 11 C -0.051 4.051 12 C -0.556 4.556 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.702 3.298 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.077 4.077 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.125 4.125 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.232 0.768 36 H 0.040 0.960 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.466 8.861 -12.480 15.376 hybrid contribution -1.943 -0.483 0.328 2.028 sum -0.477 8.378 -12.152 14.767 Atomic orbital electron populations 1.21699 0.80094 1.02442 1.01966 1.46898 1.06103 1.05009 1.79571 1.21122 0.97831 0.83484 0.95982 1.22211 0.96306 0.92271 0.97985 1.58581 1.53083 1.05825 1.20210 1.15882 0.85338 0.80391 0.77586 1.90883 1.11555 1.86159 1.58235 1.45180 1.09695 1.04021 1.78023 1.19825 0.96851 0.82810 0.89953 0.89035 1.19874 0.94687 0.93352 0.97235 1.21016 1.31947 1.10221 0.92406 0.90628 1.24982 0.95867 0.97640 0.94632 1.69906 1.39230 1.37842 1.06749 0.86862 0.78892 0.84062 0.79971 1.20177 1.21402 1.18986 1.20630 0.93662 0.96601 0.96782 1.20892 0.99178 1.00096 0.92452 1.21036 0.96799 1.00131 0.96432 1.21003 0.94470 1.01046 0.98704 1.21057 0.99248 1.00693 0.93052 1.21046 0.96187 0.98652 0.96609 0.92522 0.91428 0.91399 0.89163 0.91454 0.95589 0.90203 0.85252 0.84412 0.76802 0.95959 0.95166 0.92682 0.86729 0.86771 0.86818 0.86526 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.25 59.85 0.61 1.54 16 2 N -0.64 -9.46 2.87 -187.35 -0.54 -9.99 16 3 C 0.14 1.85 5.71 -4.04 -0.02 1.82 16 4 C 0.04 0.57 7.11 -3.83 -0.03 0.55 16 5 N -0.85 -9.00 9.62 -10.37 -0.10 -9.10 16 6 C 0.71 13.41 8.24 -86.92 -0.72 12.69 16 7 O -0.59 -13.30 15.58 5.29 0.08 -13.21 16 8 N -0.72 -13.28 3.91 -59.82 -0.23 -13.51 16 9 C 0.21 4.28 2.11 -69.09 -0.15 4.13 16 10 H 0.09 2.08 7.44 -51.93 -0.39 1.69 16 11 C -0.01 -0.31 3.56 -27.89 -0.10 -0.41 16 12 C -0.52 -13.93 9.39 -34.44 -0.32 -14.25 16 13 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 16 Si 0.87 20.83 27.47 -169.99 -4.67 16.16 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 20 C -0.08 -1.37 4.91 -104.62 -0.51 -1.88 16 21 C -0.11 -1.76 9.32 -39.58 -0.37 -2.13 16 22 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 23 C -0.13 -1.85 10.05 -39.59 -0.40 -2.25 16 24 C -0.12 -1.80 10.05 -39.59 -0.40 -2.19 16 25 C -0.11 -1.81 9.67 -39.58 -0.38 -2.20 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.58 7.89 -51.93 -0.41 0.17 16 28 H 0.07 0.74 6.36 -51.93 -0.33 0.41 16 29 H 0.09 1.40 7.41 -51.93 -0.39 1.02 16 30 H 0.07 0.68 7.89 -51.93 -0.41 0.27 16 31 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.34 2.77 8.99 -39.30 -0.35 2.42 16 34 H 0.34 3.15 9.08 -39.29 -0.36 2.79 16 35 H 0.40 6.71 6.33 -40.82 -0.26 6.45 16 36 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 37 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.11 1.73 7.73 -52.49 -0.41 1.32 16 40 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.12 1.99 8.04 -52.48 -0.42 1.57 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -33.11 356.88 -9.19 -42.30 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -6.61 Total: 12.89 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -3.28 Total: -4.91 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.10 Total: -58.61 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.11 -9.19 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417923049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.292 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds