Wall clock time and date at job start Tue Mar 31 2020 07:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.52999 * 109.47070 * 90.00054 * 3 2 1 5 5 N 1.46896 * 109.47356 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99873 * 180.28195 * 2 1 3 7 7 O 1.21583 * 119.99943 * 179.97438 * 6 2 1 8 8 N 1.34777 * 120.00128 * 359.97438 * 6 2 1 9 9 C 1.46494 * 120.00401 * 180.02562 * 8 6 2 10 10 H 1.09000 * 109.46707 * 35.00079 * 9 8 6 11 11 C 1.52996 * 109.47500 * 155.00136 * 9 8 6 12 12 C 1.50695 * 109.47401 * 295.00243 * 11 9 8 13 13 H 1.08003 * 119.99621 * 0.02562 * 12 11 9 14 14 C 1.37873 * 120.00380 * 179.97438 * 12 11 9 15 15 N 1.31509 * 120.00207 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99970 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47138 * 89.99605 * 16 14 12 18 18 H 1.48500 * 109.47184 * 209.99956 * 16 14 12 19 19 H 1.48501 * 109.47060 * 329.99612 * 16 14 12 20 20 C 1.50703 * 109.47225 * 275.00579 * 9 8 6 21 21 C 1.38242 * 119.99836 * 319.72194 * 20 9 8 22 22 C 1.38236 * 119.99858 * 179.78481 * 21 20 9 23 23 C 1.38236 * 119.99671 * 0.44691 * 22 21 20 24 24 C 1.38227 * 120.00461 * 359.80789 * 23 22 21 25 25 C 1.38230 * 120.00362 * 139.99592 * 20 9 8 26 26 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 27 27 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 28 28 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 29 29 H 1.08993 * 109.47575 * 210.00600 * 3 2 1 30 30 H 1.09001 * 109.46870 * 330.00556 * 3 2 1 31 31 H 1.09002 * 109.47116 * 300.00653 * 4 3 2 32 32 H 1.09001 * 109.47317 * 59.99875 * 4 3 2 33 33 H 1.00894 * 111.00108 * 56.04853 * 5 4 3 34 34 H 1.00899 * 111.00103 * 180.02562 * 5 4 3 35 35 H 0.97000 * 119.99555 * 0.02562 * 8 6 2 36 36 H 1.09003 * 109.46777 * 55.00337 * 11 9 8 37 37 H 1.09002 * 109.47113 * 174.99707 * 11 9 8 38 38 H 0.97003 * 120.00476 * 179.97438 * 15 14 12 39 39 H 1.07997 * 119.99481 * 0.02562 * 21 20 9 40 40 H 1.07997 * 120.00030 * 180.27346 * 22 21 20 41 41 H 1.08008 * 119.99574 * 179.83117 * 23 22 21 42 42 H 1.08001 * 120.00081 * 179.97438 * 24 23 22 43 43 H 1.08007 * 120.00042 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1866 2.9828 1.4426 6 6 2.1389 -1.1672 -0.0057 7 8 3.3547 -1.1672 -0.0062 8 7 1.4650 -2.3344 -0.0110 9 6 2.1974 -3.6031 -0.0166 10 1 3.1081 -3.4995 0.5733 11 6 1.3202 -4.7012 0.5880 12 6 1.0633 -4.3957 2.0411 13 1 1.4833 -3.5069 2.4885 14 6 0.2912 -5.2501 2.7992 15 7 0.0674 -4.9838 4.0674 16 14 -0.4359 -6.7869 2.0252 17 1 0.5180 -7.9153 2.1749 18 1 -1.7133 -7.1254 2.7025 19 1 -0.6902 -6.5418 0.5828 20 6 2.5559 -3.9699 -1.4337 21 6 1.6451 -3.7628 -2.4528 22 6 1.9756 -4.0951 -3.7533 23 6 3.2135 -4.6430 -4.0333 24 6 4.1223 -4.8549 -3.0136 25 6 3.7934 -4.5186 -1.7137 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 0.8925 -0.5094 28 1 -0.3633 -0.8875 -0.5181 29 1 3.1499 1.1384 -0.5139 30 1 1.6085 2.0284 -0.5138 31 1 1.5002 1.8406 1.9564 32 1 3.0417 0.9507 1.9564 33 1 2.6904 3.6864 0.9167 34 1 3.3678 3.2957 2.3845 35 1 0.4950 -2.3343 -0.0110 36 1 0.3717 -4.7445 0.0526 37 1 1.8296 -5.6611 0.5030 38 1 -0.4762 -5.5848 4.6007 39 1 0.6768 -3.3379 -2.2334 40 1 1.2657 -3.9293 -4.5501 41 1 3.4707 -4.9051 -5.0490 42 1 5.0892 -5.2834 -3.2324 43 1 4.5036 -4.6841 -0.9170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417923049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:07 Heat of formation + Delta-G solvation = -23.354941 kcal Electronic energy + Delta-G solvation = -23658.986039 eV Core-core repulsion = 20317.110083 eV Total energy + Delta-G solvation = -3341.875956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41982 -40.00182 -37.51941 -36.60802 -35.25757 -34.59902 -32.47256 -31.68557 -30.96838 -29.18391 -27.43149 -26.34576 -23.61985 -23.55631 -23.17998 -21.55798 -20.84134 -19.15246 -18.96897 -17.87189 -17.44821 -16.84873 -16.69239 -16.40223 -16.00153 -15.89161 -15.30876 -15.19954 -14.80349 -14.59106 -14.49947 -14.18629 -14.17360 -13.97049 -13.79639 -13.53236 -13.27349 -13.01000 -12.95609 -12.53652 -12.39829 -12.14850 -11.92589 -11.72883 -11.71548 -11.42054 -11.19835 -10.77683 -10.13255 -9.76365 -9.73736 -9.56428 -9.44328 -8.27751 -6.32645 0.50798 0.56933 1.37833 1.38965 1.50077 1.70840 2.22065 2.36047 2.90582 3.04979 3.15115 3.73635 3.92425 3.99054 4.03703 4.13325 4.21308 4.27405 4.33027 4.36618 4.46133 4.58713 4.62515 4.73579 4.75800 4.81389 4.86604 4.99930 5.03016 5.15370 5.19044 5.26966 5.55168 5.58681 5.60204 5.65389 5.66410 5.84678 5.99228 6.14355 6.19098 6.27014 6.58876 6.73827 7.04089 7.31324 7.63928 8.88679 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.009702 B = 0.006414 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.165456 B = 4364.521294 C = 6481.832592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.632 5.632 3 C 0.140 3.860 4 C 0.053 3.947 5 N -0.850 5.850 6 C 0.698 3.302 7 O -0.635 6.635 8 N -0.712 5.712 9 C 0.221 3.779 10 H 0.050 0.950 11 C -0.003 4.003 12 C -0.518 4.518 13 H 0.028 0.972 14 C 0.012 3.988 15 N -0.948 5.948 16 Si 0.946 3.054 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.241 1.241 20 C -0.099 4.099 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.132 4.132 26 H 0.051 0.949 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.354 0.646 34 H 0.352 0.648 35 H 0.404 0.596 36 H 0.038 0.962 37 H 0.030 0.970 38 H 0.266 0.734 39 H 0.123 0.877 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.142 0.858 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 9.336 -15.805 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.369 5.369 3 C 0.017 3.983 4 C -0.079 4.079 5 N -0.383 5.383 6 C 0.400 3.600 7 O -0.517 6.517 8 N -0.366 5.366 9 C 0.115 3.885 10 H 0.069 0.931 11 C -0.041 4.041 12 C -0.556 4.556 13 H 0.046 0.954 14 C -0.185 4.185 15 N -0.589 5.589 16 Si 0.769 3.231 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.164 1.164 20 C -0.101 4.101 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.150 4.150 26 H 0.070 0.930 27 H 0.126 0.874 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.241 0.759 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.193 8.872 -16.015 18.309 hybrid contribution -1.365 -0.356 1.442 2.017 sum -1.558 8.516 -14.572 16.950 Atomic orbital electron populations 1.21958 0.77578 1.04740 1.02382 1.46987 1.07673 1.04118 1.78143 1.21251 0.97385 0.83589 0.96108 1.21976 0.96091 0.92286 0.97548 1.58486 1.53062 1.05445 1.21266 1.16133 0.84979 0.81454 0.77475 1.90840 1.13675 1.86947 1.60218 1.45033 1.09911 1.03634 1.78017 1.19414 0.94776 0.82899 0.91392 0.93148 1.19724 0.95735 0.94133 0.94493 1.21162 1.31175 1.08519 0.94740 0.95392 1.25895 0.96378 1.01286 0.94958 1.70066 1.40613 1.39564 1.08613 0.85730 0.77890 0.79232 0.80211 1.19856 1.21003 1.16402 1.20425 0.95113 0.98893 0.95650 1.21058 0.99179 1.00398 0.92994 1.21437 0.97676 0.98786 0.96194 1.21475 0.93734 0.99260 1.00082 1.21375 1.00703 1.00001 0.92043 1.21174 0.96014 0.99899 0.97949 0.93005 0.87407 0.90881 0.91900 0.87051 0.94469 0.94725 0.83239 0.83438 0.75890 0.94378 0.95173 0.92542 0.85910 0.83455 0.83158 0.83984 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.59 10.25 127.77 1.31 2.90 16 2 N -0.63 -18.72 2.87 -864.92 -2.49 -21.21 16 3 C 0.14 3.62 5.71 86.38 0.49 4.11 16 4 C 0.05 1.40 7.11 86.30 0.61 2.02 16 5 N -0.85 -17.48 9.62 -186.72 -1.80 -19.28 16 6 C 0.70 27.71 8.24 179.05 1.47 29.18 16 7 O -0.64 -30.60 15.58 -3.98 -0.06 -30.66 16 8 N -0.71 -27.43 3.91 -461.43 -1.80 -29.24 16 9 C 0.22 9.41 2.11 44.25 0.09 9.51 16 10 H 0.05 2.52 7.44 -2.39 -0.02 2.50 16 11 C 0.00 -0.14 3.56 29.84 0.11 -0.04 16 12 C -0.52 -29.06 9.39 25.60 0.24 -28.82 16 13 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 14 C 0.01 0.68 5.47 84.65 0.46 1.15 16 15 N -0.95 -58.43 13.96 21.44 0.30 -58.13 16 16 Si 0.95 42.84 27.47 68.60 1.88 44.73 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 20 C -0.10 -3.65 4.91 -19.86 -0.10 -3.75 16 21 C -0.12 -3.64 9.32 22.27 0.21 -3.43 16 22 C -0.12 -3.08 10.05 22.27 0.22 -2.85 16 23 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 24 C -0.12 -3.37 10.05 22.27 0.22 -3.14 16 25 C -0.13 -4.54 9.67 22.27 0.22 -4.33 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.11 1.43 7.89 -2.39 -0.02 1.41 16 28 H 0.07 1.47 6.36 -2.39 -0.02 1.45 16 29 H 0.06 2.00 7.41 -2.39 -0.02 1.98 16 30 H 0.11 1.90 7.89 -2.39 -0.02 1.88 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.35 5.14 8.99 -89.70 -0.81 4.33 16 34 H 0.35 6.28 9.08 -89.69 -0.81 5.47 16 35 H 0.40 13.87 6.33 -92.71 -0.59 13.29 16 36 H 0.04 1.63 7.20 -2.39 -0.02 1.61 16 37 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.12 3.46 7.73 -2.91 -0.02 3.44 16 40 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 41 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 42 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.11 3.89 8.04 -2.91 -0.02 3.87 16 Total: -1.00 -77.12 356.88 0.59 -76.52 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -1.24 Total: 37.55 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 5.79 Total: -0.30 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -5.79 Total: -127.85 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.06 Total: -30.66 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.73 kcal Total: -77.12 0.59 -76.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417923049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.169 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds