Wall clock time and date at job start Tue Mar 31 2020 07:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00453 * 2 1 4 4 C 1.52996 * 109.47517 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47256 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99958 * 180.02562 * 5 4 3 7 7 O 1.21591 * 119.99658 * 359.71890 * 6 5 4 8 8 N 1.34776 * 119.99804 * 179.72814 * 6 5 4 9 9 C 1.46496 * 119.99733 * 175.07893 * 8 6 5 10 10 H 1.09002 * 109.47535 * 38.53897 * 9 8 6 11 11 C 1.53005 * 109.46858 * 158.53440 * 9 8 6 12 12 C 1.50696 * 109.47621 * 294.53954 * 11 9 8 13 13 H 1.08007 * 119.99788 * 354.98352 * 12 11 9 14 14 C 1.37876 * 120.00116 * 174.98482 * 12 11 9 15 15 N 1.31510 * 119.99906 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99711 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47276 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46657 * 120.00493 * 16 14 12 19 19 H 1.48503 * 109.47162 * 239.99800 * 16 14 12 20 20 C 1.50695 * 109.47307 * 278.53507 * 9 8 6 21 21 C 1.38230 * 120.00433 * 319.72982 * 20 9 8 22 22 C 1.38234 * 120.00545 * 179.78625 * 21 20 9 23 23 C 1.38236 * 119.99649 * 0.44114 * 22 21 20 24 24 C 1.38239 * 120.00180 * 359.81013 * 23 22 21 25 25 C 1.38238 * 119.99599 * 140.00147 * 20 9 8 26 26 H 1.08998 * 109.46905 * 300.00350 * 1 2 3 27 27 H 1.08998 * 109.46829 * 60.00091 * 1 2 3 28 28 H 1.08995 * 109.47167 * 179.97438 * 1 2 3 29 29 H 1.00907 * 111.00304 * 236.04454 * 2 1 3 30 30 H 1.09000 * 109.47284 * 59.99288 * 3 2 1 31 31 H 1.09006 * 109.46838 * 300.00176 * 3 2 1 32 32 H 1.09008 * 109.47244 * 60.00010 * 4 3 2 33 33 H 1.08998 * 109.47288 * 299.99632 * 4 3 2 34 34 H 0.96994 * 119.99848 * 359.72085 * 5 4 3 35 35 H 0.96997 * 120.00177 * 355.07587 * 8 6 5 36 36 H 1.09002 * 109.47120 * 54.54353 * 11 9 8 37 37 H 1.09004 * 109.46700 * 174.53844 * 11 9 8 38 38 H 0.96999 * 119.99951 * 180.02562 * 15 14 12 39 39 H 1.08007 * 119.99585 * 359.97438 * 21 20 9 40 40 H 1.07996 * 120.00256 * 180.27719 * 22 21 20 41 41 H 1.08001 * 120.00027 * 179.83711 * 23 22 21 42 42 H 1.07994 * 120.00531 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00432 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3305 0.0006 5 7 4.0500 2.6982 0.0000 6 6 5.3812 2.9090 -0.0001 7 8 6.1463 1.9640 0.0055 8 7 5.8642 4.1673 -0.0062 9 6 7.3067 4.3986 0.1025 10 1 7.8406 3.6398 -0.4697 11 6 7.6439 5.7850 -0.4500 12 6 7.3547 5.8206 -1.9285 13 1 7.0464 4.9208 -2.4403 14 6 7.4837 7.0017 -2.6280 15 7 7.8596 8.0972 -2.0049 16 14 7.1258 7.0456 -4.4609 17 1 6.7243 5.6915 -4.9194 18 1 6.0239 8.0049 -4.7272 19 1 8.3442 7.4757 -5.1930 20 6 7.7204 4.3202 1.5494 21 6 6.9173 4.8737 2.5290 22 6 7.2946 4.7979 3.8566 23 6 8.4796 4.1766 4.2040 24 6 9.2854 3.6276 3.2240 25 6 8.9059 3.6997 1.8966 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8306 -0.5262 -0.7814 30 1 1.6460 1.8948 0.8899 31 1 1.6460 1.8947 -0.8900 32 1 3.8748 0.8070 -0.8892 33 1 3.8741 0.8074 0.8909 34 1 3.4396 3.4520 -0.0048 35 1 5.2568 4.9196 -0.0826 36 1 7.0375 6.5355 0.0570 37 1 8.6998 5.9964 -0.2811 38 1 7.9500 8.9282 -2.4969 39 1 5.9935 5.3627 2.2572 40 1 6.6650 5.2265 4.6223 41 1 8.7758 4.1197 5.2410 42 1 10.2114 3.1426 3.4953 43 1 9.5353 3.2707 1.1310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417923933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:15 Heat of formation + Delta-G solvation = -12.444957 kcal Electronic energy + Delta-G solvation = -22907.771371 eV Core-core repulsion = 19566.368508 eV Total energy + Delta-G solvation = -3341.402863 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76238 -38.58853 -36.85143 -35.21715 -33.99147 -32.70445 -31.10050 -30.41011 -29.16192 -28.42976 -25.11714 -24.36827 -22.34543 -22.21438 -21.90159 -20.72113 -19.73044 -17.94417 -16.84418 -16.35030 -16.16048 -15.91328 -15.23038 -14.87953 -14.73787 -14.53648 -14.32286 -14.07197 -13.54294 -13.37659 -13.28346 -12.96079 -12.69351 -12.46748 -12.08953 -12.07881 -11.68604 -11.57083 -11.44423 -11.11608 -10.90250 -10.72055 -10.57109 -10.44798 -9.73044 -9.65948 -9.26829 -8.87891 -8.81835 -8.49881 -8.44335 -8.26404 -8.11163 -6.08821 -4.11729 1.83544 1.86111 3.06014 3.25516 3.34334 3.39033 3.74723 4.05947 4.28032 4.40229 4.72343 4.82915 4.92862 5.09651 5.19334 5.27830 5.31246 5.31553 5.32954 5.42952 5.55889 5.59949 5.84808 5.91008 5.96632 5.99935 6.21166 6.40798 6.47969 6.56389 6.63332 6.75022 6.89846 6.90666 7.00180 7.01494 7.16159 7.35917 7.46452 7.53871 7.70902 7.88742 8.27368 8.56649 8.94797 9.14588 9.53136 11.01733 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.005223 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.932587 B = 5359.655881 C = 7993.911984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.692 5.692 3 C 0.047 3.953 4 C 0.143 3.857 5 N -0.753 5.753 6 C 0.704 3.296 7 O -0.597 6.597 8 N -0.717 5.717 9 C 0.202 3.798 10 H 0.084 0.916 11 C 0.023 3.977 12 C -0.518 4.518 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.071 4.071 21 C -0.106 4.106 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.108 4.108 26 H 0.065 0.935 27 H 0.022 0.978 28 H 0.069 0.931 29 H 0.345 0.655 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.393 0.607 35 H 0.397 0.603 36 H 0.028 0.972 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.281 -9.654 7.768 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.323 5.323 3 C -0.083 4.083 4 C 0.018 3.982 5 N -0.410 5.410 6 C 0.404 3.596 7 O -0.475 6.475 8 N -0.369 5.369 9 C 0.097 3.903 10 H 0.102 0.898 11 C -0.014 4.014 12 C -0.556 4.556 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.072 4.072 21 C -0.124 4.124 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.126 4.126 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.163 0.837 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.226 0.774 35 H 0.231 0.769 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.474 -10.414 8.430 16.409 hybrid contribution -0.981 1.204 -1.979 2.516 sum -10.455 -9.210 6.451 15.354 Atomic orbital electron populations 1.22193 0.87322 1.02041 1.00549 1.60254 1.08014 1.13700 1.50364 1.22146 0.94638 0.90215 1.01290 1.20939 0.91492 0.83080 1.02689 1.44966 1.05823 1.08273 1.81983 1.15960 0.81764 0.84218 0.77657 1.90878 1.56712 1.41644 1.58274 1.45125 1.08921 1.05410 1.77461 1.20091 0.78764 1.01840 0.89557 0.89754 1.19401 0.97942 0.88147 0.95939 1.21193 1.45980 0.95165 0.93247 0.92317 1.24987 0.95216 0.95689 0.98296 1.69968 1.47322 0.99903 1.35950 0.86549 0.77940 0.78000 0.85603 1.19774 1.21101 1.20976 1.20603 0.94369 0.95339 0.96896 1.20891 0.99722 0.99395 0.92430 1.21031 0.96995 1.00280 0.96109 1.20983 0.95510 1.00135 0.98755 1.21036 0.99540 1.00436 0.93140 1.21021 0.96636 0.98900 0.96078 0.91587 0.95899 0.91227 0.83745 0.90349 0.94499 0.92086 0.90977 0.77371 0.76875 0.95360 0.94983 0.92957 0.86652 0.86839 0.86911 0.86653 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.70 60.06 0.64 0.85 16 2 N -0.69 -6.16 6.86 -121.14 -0.83 -6.99 16 3 C 0.05 0.44 5.80 -3.83 -0.02 0.41 16 4 C 0.14 1.77 5.93 -4.04 -0.02 1.75 16 5 N -0.75 -10.41 5.56 -65.22 -0.36 -10.77 16 6 C 0.70 13.00 8.47 -86.92 -0.74 12.26 16 7 O -0.60 -13.32 16.04 5.29 0.08 -13.23 16 8 N -0.72 -13.20 4.10 -59.81 -0.24 -13.44 16 9 C 0.20 4.21 2.11 -69.08 -0.15 4.06 16 10 H 0.08 1.93 7.48 -51.93 -0.39 1.54 16 11 C 0.02 0.55 4.47 -27.88 -0.12 0.43 16 12 C -0.52 -13.72 8.85 -34.44 -0.30 -14.03 16 13 H 0.06 1.58 7.75 -52.48 -0.41 1.17 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 16 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.07 -1.35 4.86 -104.63 -0.51 -1.86 16 21 C -0.11 -1.83 9.32 -39.59 -0.37 -2.20 16 22 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 23 C -0.14 -2.00 10.05 -39.58 -0.40 -2.39 16 24 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 25 C -0.11 -1.93 9.67 -39.58 -0.38 -2.32 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.34 2.76 8.82 -39.29 -0.35 2.41 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.39 4.34 8.49 -40.82 -0.35 3.99 16 35 H 0.40 6.68 8.59 -40.82 -0.35 6.33 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.12 1.87 7.73 -52.48 -0.41 1.47 16 40 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.12 2.06 8.04 -52.49 -0.42 1.64 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -32.24 365.12 -10.28 -42.52 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.87 Total: 11.35 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -3.27 Total: -6.15 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.70 Total: -55.97 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.24 -10.28 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417923933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.071 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds