Wall clock time and date at job start Tue Mar 31 2020 07:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00453 * 2 1 4 4 C 1.52996 * 109.47517 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47256 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99958 * 180.02562 * 5 4 3 7 7 O 1.21591 * 119.99658 * 359.71890 * 6 5 4 8 8 N 1.34776 * 119.99804 * 179.72814 * 6 5 4 9 9 C 1.46496 * 119.99733 * 175.07893 * 8 6 5 10 10 H 1.09002 * 109.47535 * 38.53897 * 9 8 6 11 11 C 1.53005 * 109.46858 * 158.53440 * 9 8 6 12 12 C 1.50696 * 109.47621 * 294.53954 * 11 9 8 13 13 H 1.08007 * 119.99788 * 354.98352 * 12 11 9 14 14 C 1.37876 * 120.00116 * 174.98482 * 12 11 9 15 15 N 1.31510 * 119.99906 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99711 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47276 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46657 * 120.00493 * 16 14 12 19 19 H 1.48503 * 109.47162 * 239.99800 * 16 14 12 20 20 C 1.50695 * 109.47307 * 278.53507 * 9 8 6 21 21 C 1.38230 * 120.00433 * 319.72982 * 20 9 8 22 22 C 1.38234 * 120.00545 * 179.78625 * 21 20 9 23 23 C 1.38236 * 119.99649 * 0.44114 * 22 21 20 24 24 C 1.38239 * 120.00180 * 359.81013 * 23 22 21 25 25 C 1.38238 * 119.99599 * 140.00147 * 20 9 8 26 26 H 1.08998 * 109.46905 * 300.00350 * 1 2 3 27 27 H 1.08998 * 109.46829 * 60.00091 * 1 2 3 28 28 H 1.08995 * 109.47167 * 179.97438 * 1 2 3 29 29 H 1.00907 * 111.00304 * 236.04454 * 2 1 3 30 30 H 1.09000 * 109.47284 * 59.99288 * 3 2 1 31 31 H 1.09006 * 109.46838 * 300.00176 * 3 2 1 32 32 H 1.09008 * 109.47244 * 60.00010 * 4 3 2 33 33 H 1.08998 * 109.47288 * 299.99632 * 4 3 2 34 34 H 0.96994 * 119.99848 * 359.72085 * 5 4 3 35 35 H 0.96997 * 120.00177 * 355.07587 * 8 6 5 36 36 H 1.09002 * 109.47120 * 54.54353 * 11 9 8 37 37 H 1.09004 * 109.46700 * 174.53844 * 11 9 8 38 38 H 0.96999 * 119.99951 * 180.02562 * 15 14 12 39 39 H 1.08007 * 119.99585 * 359.97438 * 21 20 9 40 40 H 1.07996 * 120.00256 * 180.27719 * 22 21 20 41 41 H 1.08001 * 120.00027 * 179.83711 * 23 22 21 42 42 H 1.07994 * 120.00531 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00432 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3305 0.0006 5 7 4.0500 2.6982 0.0000 6 6 5.3812 2.9090 -0.0001 7 8 6.1463 1.9640 0.0055 8 7 5.8642 4.1673 -0.0062 9 6 7.3067 4.3986 0.1025 10 1 7.8406 3.6398 -0.4697 11 6 7.6439 5.7850 -0.4500 12 6 7.3547 5.8206 -1.9285 13 1 7.0464 4.9208 -2.4403 14 6 7.4837 7.0017 -2.6280 15 7 7.8596 8.0972 -2.0049 16 14 7.1258 7.0456 -4.4609 17 1 6.7243 5.6915 -4.9194 18 1 6.0239 8.0049 -4.7272 19 1 8.3442 7.4757 -5.1930 20 6 7.7204 4.3202 1.5494 21 6 6.9173 4.8737 2.5290 22 6 7.2946 4.7979 3.8566 23 6 8.4796 4.1766 4.2040 24 6 9.2854 3.6276 3.2240 25 6 8.9059 3.6997 1.8966 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8306 -0.5262 -0.7814 30 1 1.6460 1.8948 0.8899 31 1 1.6460 1.8947 -0.8900 32 1 3.8748 0.8070 -0.8892 33 1 3.8741 0.8074 0.8909 34 1 3.4396 3.4520 -0.0048 35 1 5.2568 4.9196 -0.0826 36 1 7.0375 6.5355 0.0570 37 1 8.6998 5.9964 -0.2811 38 1 7.9500 8.9282 -2.4969 39 1 5.9935 5.3627 2.2572 40 1 6.6650 5.2265 4.6223 41 1 8.7758 4.1197 5.2410 42 1 10.2114 3.1426 3.4953 43 1 9.5353 3.2707 1.1310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417923933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:15 Heat of formation + Delta-G solvation = -35.236321 kcal Electronic energy + Delta-G solvation = -22908.759679 eV Core-core repulsion = 19566.368508 eV Total energy + Delta-G solvation = -3342.391171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.22607 -39.89885 -37.76579 -36.74639 -35.22859 -34.69717 -32.50831 -31.67608 -30.59954 -29.73245 -26.71817 -25.34261 -23.78071 -23.40120 -23.13080 -22.15280 -21.23304 -19.35250 -18.61403 -17.75991 -17.34844 -17.07630 -16.52070 -16.47038 -16.02531 -15.89971 -15.47500 -15.22114 -14.86187 -14.58503 -14.41744 -14.20778 -14.16206 -13.97117 -13.64901 -13.38837 -12.93066 -12.71204 -12.64144 -12.51975 -12.47150 -12.41632 -12.12295 -11.85974 -11.54578 -11.31196 -11.27441 -10.58989 -10.28866 -9.75644 -9.69266 -9.48373 -9.47816 -8.19843 -6.29690 0.53345 0.58327 1.37996 1.41091 1.52514 1.78159 2.25265 2.40290 2.96328 3.12922 3.23677 3.63752 3.89222 4.02861 4.06404 4.09775 4.23116 4.34142 4.46565 4.46799 4.53882 4.63671 4.67716 4.76971 4.81444 4.91136 4.93828 5.05067 5.15054 5.22300 5.30902 5.44720 5.51420 5.63183 5.64746 5.66563 5.79206 5.90438 5.93863 6.13970 6.18340 6.23132 6.36249 6.82994 7.19566 7.39374 7.68659 8.90986 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.005223 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.932587 B = 5359.655881 C = 7993.911984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.705 5.705 3 C 0.060 3.940 4 C 0.146 3.854 5 N -0.734 5.734 6 C 0.702 3.298 7 O -0.638 6.638 8 N -0.712 5.712 9 C 0.219 3.781 10 H 0.054 0.946 11 C 0.038 3.962 12 C -0.528 4.528 13 H 0.051 0.949 14 C 0.012 3.988 15 N -0.925 5.925 16 Si 0.957 3.043 17 H -0.271 1.271 18 H -0.274 1.274 19 H -0.282 1.282 20 C -0.098 4.098 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.134 4.134 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.079 0.921 29 H 0.349 0.651 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.410 0.590 35 H 0.405 0.595 36 H 0.016 0.984 37 H 0.003 0.997 38 H 0.264 0.736 39 H 0.120 0.880 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.144 0.856 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.806 -9.830 8.770 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.337 5.337 3 C -0.070 4.070 4 C 0.021 3.979 5 N -0.392 5.392 6 C 0.401 3.599 7 O -0.520 6.520 8 N -0.365 5.365 9 C 0.113 3.887 10 H 0.072 0.928 11 C 0.001 3.999 12 C -0.566 4.566 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.565 5.565 16 Si 0.783 3.217 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.208 1.208 20 C -0.099 4.099 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.152 4.152 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.098 0.902 29 H 0.167 0.833 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.246 0.754 35 H 0.240 0.760 36 H 0.035 0.965 37 H 0.021 0.979 38 H 0.073 0.927 39 H 0.138 0.862 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.057 -10.580 9.433 17.977 hybrid contribution -0.490 1.219 -2.221 2.580 sum -11.547 -9.361 7.212 16.522 Atomic orbital electron populations 1.22239 0.85993 1.02904 1.00905 1.60260 1.09276 1.13308 1.50840 1.21994 0.91930 0.90915 1.02131 1.20988 0.93718 0.81754 1.01427 1.44802 1.04307 1.09723 1.80353 1.16092 0.82927 0.83409 0.77431 1.90845 1.58224 1.42758 1.60169 1.44915 1.08110 1.05930 1.77549 1.19565 0.79849 0.98503 0.90802 0.92825 1.19131 0.95814 0.89933 0.95024 1.21412 1.45766 0.94917 0.94477 0.93087 1.25753 0.94964 0.95300 1.02633 1.70072 1.48229 1.00482 1.37717 0.85524 0.77925 0.78064 0.80237 1.19592 1.19995 1.20771 1.20491 0.95743 0.97706 0.95960 1.21050 0.99832 0.99647 0.93269 1.21434 0.97605 0.99561 0.95741 1.21465 0.94646 0.98286 1.00387 1.21387 1.00723 1.00024 0.92083 1.21188 0.96627 0.99868 0.97559 0.91394 0.95299 0.90201 0.83334 0.89556 0.93502 0.93105 0.92548 0.75429 0.75955 0.96548 0.97860 0.92702 0.86210 0.83644 0.83122 0.83860 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.70 127.69 1.37 1.72 16 2 N -0.70 -11.44 6.86 -537.17 -3.68 -15.13 16 3 C 0.06 1.02 5.80 86.30 0.50 1.52 16 4 C 0.15 3.54 5.93 86.38 0.51 4.06 16 5 N -0.73 -19.94 5.56 -478.52 -2.66 -22.60 16 6 C 0.70 26.41 8.47 179.05 1.52 27.92 16 7 O -0.64 -29.49 16.04 -4.00 -0.06 -29.56 16 8 N -0.71 -26.98 4.10 -461.41 -1.89 -28.87 16 9 C 0.22 9.56 2.11 44.25 0.09 9.66 16 10 H 0.05 2.64 7.48 -2.39 -0.02 2.62 16 11 C 0.04 1.94 4.47 29.85 0.13 2.08 16 12 C -0.53 -28.79 8.85 25.60 0.23 -28.56 16 13 H 0.05 2.81 7.75 -2.91 -0.02 2.79 16 14 C 0.01 0.67 5.46 84.66 0.46 1.13 16 15 N -0.92 -53.66 13.29 21.45 0.28 -53.38 16 16 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 20 C -0.10 -3.84 4.86 -19.87 -0.10 -3.94 16 21 C -0.12 -4.10 9.32 22.27 0.21 -3.89 16 22 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 23 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 24 C -0.12 -3.69 10.05 22.27 0.22 -3.47 16 25 C -0.13 -4.93 9.67 22.27 0.22 -4.72 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.35 5.15 8.82 -89.69 -0.79 4.36 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.41 8.48 8.49 -92.71 -0.79 7.70 16 35 H 0.40 13.84 8.59 -92.71 -0.80 13.04 16 36 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 38 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 39 H 0.12 3.86 7.73 -2.91 -0.02 3.83 16 40 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 41 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 42 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 43 H 0.11 4.13 8.04 -2.91 -0.02 4.11 16 Total: -1.00 -71.07 365.12 -1.53 -72.61 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -1.36 Total: 34.57 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 5.81 Total: -3.04 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -7.95 Total: -119.98 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.06 Total: -29.56 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -71.07 -1.53 -72.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417923933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.369 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds