Wall clock time and date at job start Tue Mar 31 2020 07:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 110.99692 * 2 1 4 4 C 1.50701 * 109.46593 * 179.97438 * 3 2 1 5 5 C 1.38298 * 119.96749 * 269.72258 * 4 3 2 6 6 C 1.38259 * 120.14343 * 179.76863 * 5 4 3 7 7 C 1.38134 * 120.06889 * 0.50684 * 6 5 4 8 8 C 1.38846 * 119.92887 * 359.75374 * 7 6 5 9 9 N 1.39934 * 120.07199 * 179.97438 * 8 7 6 10 10 C 1.34768 * 119.99615 * 324.92727 * 9 8 7 11 11 O 1.21297 * 120.00366 * 4.62452 * 10 9 8 12 12 C 1.50699 * 120.00206 * 184.62384 * 10 9 8 13 13 H 1.09002 * 109.46756 * 320.00498 * 12 10 9 14 14 N 1.46894 * 109.47528 * 200.00280 * 12 10 9 15 15 C 1.53006 * 109.46960 * 79.99884 * 12 10 9 16 16 C 1.53001 * 109.46728 * 185.00155 * 15 12 10 17 17 C 1.50704 * 109.46628 * 180.02562 * 16 15 12 18 18 H 1.07994 * 120.00124 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00046 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99560 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00245 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46807 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47074 * 120.00033 * 21 19 17 24 24 H 1.48502 * 109.46780 * 239.99920 * 21 19 17 25 25 C 1.38090 * 119.96211 * 90.00083 * 4 3 2 26 26 H 1.09003 * 109.46801 * 59.99878 * 1 2 3 27 27 H 1.08997 * 109.46876 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47402 * 300.00587 * 1 2 3 29 29 H 1.00900 * 110.99499 * 123.95148 * 2 1 3 30 30 H 1.08999 * 109.47221 * 299.99552 * 3 2 1 31 31 H 1.08994 * 109.47253 * 60.00160 * 3 2 1 32 32 H 1.08004 * 119.92875 * 0.02562 * 5 4 3 33 33 H 1.08001 * 119.96693 * 180.23633 * 6 5 4 34 34 H 1.08002 * 120.03670 * 179.72305 * 7 6 5 35 35 H 0.96991 * 119.99907 * 144.92834 * 9 8 7 36 36 H 1.00902 * 111.00489 * 176.05082 * 14 12 10 37 37 H 1.00903 * 111.00049 * 299.99889 * 14 12 10 38 38 H 1.09000 * 109.47014 * 305.00623 * 15 12 10 39 39 H 1.08999 * 109.46799 * 65.00429 * 15 12 10 40 40 H 1.08992 * 109.47525 * 300.00247 * 16 15 12 41 41 H 1.08999 * 109.47257 * 60.00554 * 16 15 12 42 42 H 0.97003 * 119.99805 * 180.02562 * 20 19 17 43 43 H 1.07999 * 120.04014 * 359.95878 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1921 1.3187 1.1990 6 6 5.5741 1.2770 1.2039 7 6 6.2701 1.2582 0.0109 8 6 5.5803 1.2761 -1.1940 9 7 6.2824 1.2576 -2.4043 10 6 7.4639 1.8977 -2.5077 11 8 7.9592 2.4183 -1.5305 12 6 8.1698 1.9665 -3.8373 13 1 8.0729 1.0096 -4.3501 14 7 9.5920 2.2648 -3.6219 15 6 7.5412 3.0690 -4.6919 16 6 8.1730 3.0568 -6.0853 17 6 7.5542 4.1431 -6.9269 18 1 6.7875 4.7789 -6.5095 19 6 7.9671 4.3254 -8.2298 20 7 8.9005 3.5508 -8.7382 21 14 7.2007 5.6723 -9.2727 22 1 6.1814 6.3981 -8.4729 23 1 8.2561 6.6215 -9.7090 24 1 6.5548 5.0677 -10.4654 25 6 4.1918 1.3126 -1.1954 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8306 -0.5261 0.7814 30 1 1.6460 1.8948 -0.8900 31 1 1.6460 1.8948 0.8899 32 1 3.6503 1.3375 2.1331 33 1 6.1101 1.2635 2.1414 34 1 7.3498 1.2301 0.0153 35 1 5.9188 0.7842 -3.1687 36 1 10.1001 2.2528 -4.4936 37 1 9.7085 3.1478 -3.1477 38 1 6.4686 2.8952 -4.7777 39 1 7.7160 4.0370 -4.2222 40 1 9.2455 3.2306 -5.9996 41 1 7.9982 2.0889 -6.5551 42 1 9.1912 3.6792 -9.6547 43 1 3.6524 1.3262 -2.1310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424056882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:05 Heat of formation + Delta-G solvation = -21.313081 kcal Electronic energy + Delta-G solvation = -22344.553151 eV Core-core repulsion = 19002.765737 eV Total energy + Delta-G solvation = -3341.787414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53705 -38.89466 -36.40625 -35.52296 -34.57590 -32.88925 -31.52979 -29.99458 -29.85053 -26.95189 -26.50974 -24.24574 -23.87360 -22.40665 -21.77600 -20.45033 -19.75096 -17.70217 -17.26615 -16.35733 -16.32015 -15.99303 -15.17014 -15.07685 -14.90671 -14.56906 -14.46452 -14.28788 -13.94833 -13.72579 -13.20557 -13.15364 -12.71741 -12.57962 -12.40977 -12.19268 -12.07116 -11.76539 -11.70600 -11.20149 -11.10009 -10.96380 -10.68493 -10.29892 -10.02956 -9.90169 -9.34270 -9.24468 -8.93990 -8.74893 -8.46875 -8.27117 -8.11828 -6.11116 -4.14258 1.23937 1.31316 2.77010 3.10581 3.24846 3.32976 3.36924 3.66099 4.12485 4.37587 4.57846 4.74195 4.82021 4.99943 5.06218 5.07029 5.11001 5.18347 5.25251 5.32188 5.35403 5.49624 5.52703 5.53727 5.65024 5.70799 5.91455 6.22619 6.29001 6.34789 6.47120 6.48893 6.49675 6.59693 6.82334 6.98550 7.02907 7.33596 7.47900 7.53853 7.60126 7.83849 7.86285 8.26706 8.29630 8.91894 9.50963 10.99830 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016184 B = 0.003073 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.658181 B = 9108.434203 C =10449.799824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.690 5.690 3 C 0.099 3.901 4 C -0.071 4.071 5 C -0.135 4.135 6 C -0.103 4.103 7 C -0.120 4.120 8 C 0.154 3.846 9 N -0.677 5.677 10 C 0.526 3.474 11 O -0.518 6.518 12 C 0.077 3.923 13 H 0.100 0.900 14 N -0.830 5.830 15 C -0.138 4.138 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.124 4.124 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.021 0.979 29 H 0.343 0.657 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.140 0.860 35 H 0.413 0.587 36 H 0.356 0.644 37 H 0.346 0.654 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.263 -7.709 18.157 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.320 5.320 3 C -0.029 4.029 4 C -0.072 4.072 5 C -0.154 4.154 6 C -0.122 4.122 7 C -0.140 4.140 8 C 0.059 3.941 9 N -0.323 5.323 10 C 0.314 3.686 11 O -0.392 6.392 12 C -0.039 4.039 13 H 0.118 0.882 14 N -0.363 5.363 15 C -0.177 4.177 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.145 4.145 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.160 0.840 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.158 0.842 35 H 0.249 0.751 36 H 0.172 0.828 37 H 0.159 0.841 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.697 -8.069 18.386 23.237 hybrid contribution -0.993 1.634 -0.827 2.083 sum -12.690 -6.435 17.559 22.600 Atomic orbital electron populations 1.22220 0.87597 1.02020 1.00490 1.60430 1.07618 1.13697 1.50280 1.20895 0.90642 0.89961 1.01417 1.19429 0.94571 1.00518 0.92718 1.20938 0.94360 1.03047 0.97088 1.20994 0.93896 0.99536 0.97767 1.21360 1.01471 1.00399 0.90820 1.17800 0.90761 0.99464 0.86057 1.43629 1.22086 1.53779 1.12763 1.21134 0.79776 0.76227 0.91448 1.90632 1.64549 1.45016 1.39031 1.21474 0.90004 1.01656 0.90730 0.88232 1.58750 1.07681 1.40824 1.29020 1.22399 1.00377 0.96291 0.98682 1.19109 0.95929 0.97585 0.88670 1.21211 1.21619 1.16446 0.96921 0.92648 1.25016 0.95048 0.96286 0.97981 1.69960 1.29448 1.38603 1.15171 0.86524 0.79237 0.81894 0.80307 1.19740 1.20928 1.20915 1.20781 0.92001 1.03280 0.98479 0.91535 0.91286 0.96056 0.83957 0.90019 0.94272 0.86577 0.85881 0.84228 0.75113 0.82805 0.84053 0.92430 0.92568 0.96344 0.96238 0.92905 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.70 60.07 0.64 0.81 16 2 N -0.69 -5.67 6.84 -122.42 -0.84 -6.51 16 3 C 0.10 0.86 5.81 -4.97 -0.03 0.83 16 4 C -0.07 -0.75 5.39 -104.65 -0.56 -1.32 16 5 C -0.13 -1.36 9.69 -39.55 -0.38 -1.75 16 6 C -0.10 -1.17 10.04 -39.61 -0.40 -1.57 16 7 C -0.12 -1.65 8.70 -39.39 -0.34 -2.00 16 8 C 0.15 2.08 6.30 -83.69 -0.53 1.55 16 9 N -0.68 -9.14 5.34 -9.86 -0.05 -9.19 16 10 C 0.53 8.55 6.92 -10.99 -0.08 8.47 16 11 O -0.52 -9.73 13.69 5.54 0.08 -9.65 16 12 C 0.08 1.26 3.21 -68.87 -0.22 1.04 16 13 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 14 N -0.83 -13.86 8.94 -5.65 -0.05 -13.91 16 15 C -0.14 -2.65 4.78 -26.73 -0.13 -2.78 16 16 C 0.02 0.58 4.74 -27.88 -0.13 0.44 16 17 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 21 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.12 -1.48 9.62 -39.39 -0.38 -1.86 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.02 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.34 2.52 8.81 -39.29 -0.35 2.18 16 30 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 31 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.14 2.14 6.22 -52.49 -0.33 1.82 16 35 H 0.41 4.55 8.82 -40.82 -0.36 4.19 16 36 H 0.36 5.97 7.55 -39.29 -0.30 5.67 16 37 H 0.35 5.86 8.58 -39.29 -0.34 5.52 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -31.24 359.66 -9.31 -40.55 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -6.63 Total: 13.39 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -2.95 Total: -11.15 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.20 Total: -54.72 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.24 -9.31 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424056882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.241 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds