Wall clock time and date at job start Tue Mar 31 2020 07:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 110.99692 * 2 1 4 4 C 1.50701 * 109.46593 * 179.97438 * 3 2 1 5 5 C 1.38298 * 119.96749 * 269.72258 * 4 3 2 6 6 C 1.38259 * 120.14343 * 179.76863 * 5 4 3 7 7 C 1.38134 * 120.06889 * 0.50684 * 6 5 4 8 8 C 1.38846 * 119.92887 * 359.75374 * 7 6 5 9 9 N 1.39934 * 120.07199 * 179.97438 * 8 7 6 10 10 C 1.34768 * 119.99615 * 324.92727 * 9 8 7 11 11 O 1.21297 * 120.00366 * 4.62452 * 10 9 8 12 12 C 1.50699 * 120.00206 * 184.62384 * 10 9 8 13 13 H 1.09002 * 109.46756 * 320.00498 * 12 10 9 14 14 N 1.46894 * 109.47528 * 200.00280 * 12 10 9 15 15 C 1.53006 * 109.46960 * 79.99884 * 12 10 9 16 16 C 1.53001 * 109.46728 * 185.00155 * 15 12 10 17 17 C 1.50704 * 109.46628 * 180.02562 * 16 15 12 18 18 H 1.07994 * 120.00124 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00046 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99560 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00245 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46807 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47074 * 120.00033 * 21 19 17 24 24 H 1.48502 * 109.46780 * 239.99920 * 21 19 17 25 25 C 1.38090 * 119.96211 * 90.00083 * 4 3 2 26 26 H 1.09003 * 109.46801 * 59.99878 * 1 2 3 27 27 H 1.08997 * 109.46876 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47402 * 300.00587 * 1 2 3 29 29 H 1.00900 * 110.99499 * 123.95148 * 2 1 3 30 30 H 1.08999 * 109.47221 * 299.99552 * 3 2 1 31 31 H 1.08994 * 109.47253 * 60.00160 * 3 2 1 32 32 H 1.08004 * 119.92875 * 0.02562 * 5 4 3 33 33 H 1.08001 * 119.96693 * 180.23633 * 6 5 4 34 34 H 1.08002 * 120.03670 * 179.72305 * 7 6 5 35 35 H 0.96991 * 119.99907 * 144.92834 * 9 8 7 36 36 H 1.00902 * 111.00489 * 176.05082 * 14 12 10 37 37 H 1.00903 * 111.00049 * 299.99889 * 14 12 10 38 38 H 1.09000 * 109.47014 * 305.00623 * 15 12 10 39 39 H 1.08999 * 109.46799 * 65.00429 * 15 12 10 40 40 H 1.08992 * 109.47525 * 300.00247 * 16 15 12 41 41 H 1.08999 * 109.47257 * 60.00554 * 16 15 12 42 42 H 0.97003 * 119.99805 * 180.02562 * 20 19 17 43 43 H 1.07999 * 120.04014 * 359.95878 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1921 1.3187 1.1990 6 6 5.5741 1.2770 1.2039 7 6 6.2701 1.2582 0.0109 8 6 5.5803 1.2761 -1.1940 9 7 6.2824 1.2576 -2.4043 10 6 7.4639 1.8977 -2.5077 11 8 7.9592 2.4183 -1.5305 12 6 8.1698 1.9665 -3.8373 13 1 8.0729 1.0096 -4.3501 14 7 9.5920 2.2648 -3.6219 15 6 7.5412 3.0690 -4.6919 16 6 8.1730 3.0568 -6.0853 17 6 7.5542 4.1431 -6.9269 18 1 6.7875 4.7789 -6.5095 19 6 7.9671 4.3254 -8.2298 20 7 8.9005 3.5508 -8.7382 21 14 7.2007 5.6723 -9.2727 22 1 6.1814 6.3981 -8.4729 23 1 8.2561 6.6215 -9.7090 24 1 6.5548 5.0677 -10.4654 25 6 4.1918 1.3126 -1.1954 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8306 -0.5261 0.7814 30 1 1.6460 1.8948 -0.8900 31 1 1.6460 1.8948 0.8899 32 1 3.6503 1.3375 2.1331 33 1 6.1101 1.2635 2.1414 34 1 7.3498 1.2301 0.0153 35 1 5.9188 0.7842 -3.1687 36 1 10.1001 2.2528 -4.4936 37 1 9.7085 3.1478 -3.1477 38 1 6.4686 2.8952 -4.7777 39 1 7.7160 4.0370 -4.2222 40 1 9.2455 3.2306 -5.9996 41 1 7.9982 2.0889 -6.5551 42 1 9.1912 3.6792 -9.6547 43 1 3.6524 1.3262 -2.1310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424056882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:04 Heat of formation + Delta-G solvation = -44.157623 kcal Electronic energy + Delta-G solvation = -22345.543765 eV Core-core repulsion = 19002.765737 eV Total energy + Delta-G solvation = -3342.778028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67575 -39.91657 -37.37120 -36.84223 -35.63188 -34.85698 -32.34366 -31.70866 -30.91512 -28.17720 -27.56177 -25.89684 -24.57207 -23.39624 -23.00476 -21.90792 -20.95647 -19.03771 -18.39043 -18.13428 -17.20348 -16.88806 -16.62177 -16.19859 -16.14255 -15.78527 -15.52304 -15.47799 -14.96256 -14.79361 -14.63850 -14.48479 -14.07158 -13.65546 -13.48355 -13.39735 -13.01597 -12.97147 -12.78049 -12.65766 -12.53082 -12.45167 -12.02240 -11.83662 -11.69695 -11.32778 -11.27217 -10.73892 -10.57148 -9.79797 -9.68427 -9.39053 -9.10608 -8.22484 -6.32596 0.29616 0.41359 1.38254 1.39892 1.50730 1.53069 1.97714 2.39384 2.78637 3.11458 3.48408 3.63418 3.70906 3.82533 3.98648 4.08272 4.19081 4.20900 4.34809 4.41312 4.55790 4.57392 4.62047 4.63521 4.72630 4.79931 4.81276 5.05725 5.06640 5.07721 5.37346 5.39962 5.45958 5.56790 5.63415 5.64595 5.79864 5.97843 6.03051 6.10498 6.20347 6.39498 6.44502 6.45100 6.83021 7.07798 7.36656 8.88494 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016184 B = 0.003073 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.658181 B = 9108.434203 C =10449.799824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.702 5.702 3 C 0.103 3.897 4 C -0.070 4.070 5 C -0.127 4.127 6 C -0.106 4.106 7 C -0.142 4.142 8 C 0.130 3.870 9 N -0.665 5.665 10 C 0.528 3.472 11 O -0.547 6.547 12 C 0.084 3.916 13 H 0.115 0.885 14 N -0.829 5.829 15 C -0.121 4.121 16 C 0.030 3.970 17 C -0.544 4.544 18 H 0.054 0.946 19 C 0.005 3.995 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.277 1.277 25 C -0.129 4.129 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.348 0.652 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.117 0.883 35 H 0.424 0.576 36 H 0.355 0.645 37 H 0.345 0.655 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.004 0.996 41 H 0.004 0.996 42 H 0.264 0.736 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.407 -7.650 19.152 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.333 5.333 3 C -0.025 4.025 4 C -0.071 4.071 5 C -0.146 4.146 6 C -0.124 4.124 7 C -0.163 4.163 8 C 0.037 3.963 9 N -0.310 5.310 10 C 0.316 3.684 11 O -0.423 6.423 12 C -0.031 4.031 13 H 0.132 0.868 14 N -0.361 5.361 15 C -0.161 4.161 16 C -0.007 4.007 17 C -0.582 4.582 18 H 0.072 0.928 19 C -0.193 4.193 20 N -0.566 5.566 21 Si 0.784 3.216 22 H -0.190 1.190 23 H -0.206 1.206 24 H -0.202 1.202 25 C -0.150 4.150 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.166 0.834 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.135 0.865 35 H 0.262 0.738 36 H 0.170 0.830 37 H 0.158 0.842 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.073 0.927 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.875 -8.033 19.388 25.159 hybrid contribution -0.380 1.569 -1.066 1.934 sum -14.255 -6.465 18.322 24.098 Atomic orbital electron populations 1.22244 0.86547 1.02667 1.00792 1.60409 1.08685 1.13431 1.50804 1.20861 0.89140 0.90478 1.02040 1.19727 0.95769 0.99251 0.92378 1.21267 0.93894 1.01194 0.98213 1.21249 0.94695 0.98808 0.97654 1.21333 1.00646 1.02186 0.92122 1.17975 0.91492 1.01144 0.85729 1.43449 1.21136 1.52981 1.13482 1.20950 0.80404 0.76328 0.90741 1.90624 1.65481 1.46489 1.39729 1.21385 0.89640 1.01231 0.90826 0.86770 1.58760 1.07812 1.40703 1.28799 1.22140 1.00659 0.96860 0.96410 1.18972 0.95193 0.95808 0.90749 1.21643 1.21686 1.17186 0.97706 0.92785 1.25859 0.95526 0.98558 0.99369 1.70066 1.30702 1.40217 1.15659 0.85493 0.78476 0.79048 0.78610 1.19027 1.20560 1.20239 1.20934 0.91281 1.03178 0.99591 0.91838 0.90526 0.95093 0.83421 0.90253 0.92816 0.83606 0.83971 0.86478 0.73810 0.82971 0.84225 0.91544 0.93694 0.97784 0.97756 0.92711 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.70 127.69 1.37 1.65 16 2 N -0.70 -9.85 6.84 -541.22 -3.70 -13.55 16 3 C 0.10 1.52 5.81 85.56 0.50 2.02 16 4 C -0.07 -1.33 5.39 -19.89 -0.11 -1.43 16 5 C -0.13 -2.23 9.69 22.29 0.22 -2.01 16 6 C -0.11 -2.24 10.04 22.25 0.22 -2.01 16 7 C -0.14 -3.91 8.70 22.39 0.19 -3.72 16 8 C 0.13 3.48 6.30 38.15 0.24 3.72 16 9 N -0.66 -17.74 5.34 -303.50 -1.62 -19.36 16 10 C 0.53 17.19 6.92 87.66 0.61 17.80 16 11 O -0.55 -20.87 13.69 -3.08 -0.04 -20.91 16 12 C 0.08 2.78 3.21 44.17 0.14 2.92 16 13 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 14 N -0.83 -28.01 8.94 -171.80 -1.54 -29.54 16 15 C -0.12 -4.65 4.78 30.60 0.15 -4.51 16 16 C 0.03 1.45 4.74 29.85 0.14 1.59 16 17 C -0.54 -29.74 9.11 25.60 0.23 -29.51 16 18 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 19 C 0.01 0.30 5.46 84.65 0.46 0.76 16 20 N -0.93 -54.08 13.29 21.45 0.28 -53.79 16 21 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 C -0.13 -2.90 9.62 22.39 0.22 -2.69 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.35 4.22 8.81 -89.69 -0.79 3.43 16 30 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 31 H 0.05 0.65 8.08 -2.39 -0.02 0.63 16 32 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 33 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.12 3.73 6.22 -2.91 -0.02 3.71 16 35 H 0.42 9.04 8.82 -92.71 -0.82 8.22 16 36 H 0.35 12.12 7.55 -89.69 -0.68 11.44 16 37 H 0.34 11.89 8.58 -89.69 -0.77 11.12 16 38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.00 0.20 6.87 -2.39 -0.02 0.18 16 41 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -66.62 359.66 -2.02 -68.64 By element: Atomic # 1 Polarization: 40.64 SS G_CDS: -2.01 Total: 38.63 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 4.58 Total: -15.43 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -6.57 Total: -116.24 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.04 Total: -20.91 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -66.62 -2.02 -68.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424056882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.483 kcal (2) G-P(sol) polarization free energy of solvation -66.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds