Wall clock time and date at job start Tue Mar 31 2020 07:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 111.00199 * 2 1 4 4 C 1.39895 * 110.99875 * 123.95320 * 2 1 3 5 5 C 1.38715 * 120.09879 * 300.25058 * 4 2 1 6 6 C 1.38223 * 119.99346 * 180.27692 * 5 4 2 7 7 C 1.38281 * 120.19361 * 359.72569 * 6 5 4 8 8 C 1.38232 * 120.20308 * 359.97438 * 7 6 5 9 9 C 1.38671 * 119.99801 * 0.02562 * 8 7 6 10 10 N 1.40159 * 120.09682 * 179.97438 * 9 8 7 11 11 C 1.34780 * 119.99667 * 335.19682 * 10 9 8 12 12 O 1.21297 * 120.00084 * 354.46905 * 11 10 9 13 13 C 1.50706 * 119.99686 * 174.46174 * 11 10 9 14 14 H 1.08999 * 109.46664 * 40.00599 * 13 11 10 15 15 N 1.46899 * 109.46824 * 160.00095 * 13 11 10 16 16 C 1.52993 * 109.47545 * 280.00112 * 13 11 10 17 17 C 1.52999 * 109.47344 * 175.00238 * 16 13 11 18 18 C 1.50701 * 109.47098 * 180.02562 * 17 16 13 19 19 H 1.08003 * 120.00143 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99738 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99655 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00177 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47081 * 90.00073 * 22 20 18 24 24 H 1.48499 * 109.47405 * 210.00389 * 22 20 18 25 25 H 1.48504 * 109.47147 * 330.00328 * 22 20 18 26 26 H 1.08994 * 109.47220 * 296.04637 * 1 2 3 27 27 H 1.09003 * 109.46917 * 56.05051 * 1 2 3 28 28 H 1.09003 * 109.46915 * 176.04669 * 1 2 3 29 29 H 1.08998 * 109.47146 * 183.94945 * 3 2 1 30 30 H 1.09001 * 109.46822 * 303.95696 * 3 2 1 31 31 H 1.09007 * 109.46615 * 63.95047 * 3 2 1 32 32 H 1.08000 * 120.00271 * 0.02562 * 5 4 2 33 33 H 1.08000 * 119.90232 * 179.74992 * 6 5 4 34 34 H 1.08009 * 119.90235 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.00239 * 179.97438 * 8 7 6 36 36 H 0.96996 * 120.00161 * 155.19413 * 10 9 8 37 37 H 1.00897 * 111.00458 * 60.00172 * 15 13 11 38 38 H 1.00902 * 111.00357 * 183.95924 * 15 13 11 39 39 H 1.09005 * 109.47264 * 55.00025 * 16 13 11 40 40 H 1.09004 * 109.47216 * 295.00663 * 16 13 11 41 41 H 1.08995 * 109.47122 * 59.99691 * 17 16 13 42 42 H 1.08998 * 109.46526 * 300.00011 * 17 16 13 43 43 H 0.96997 * 119.99516 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9703 -0.7294 1.0834 5 6 1.6551 -0.3532 2.3808 6 6 2.1563 -1.0721 3.4497 7 6 2.9675 -2.1702 3.2302 8 6 3.2817 -2.5560 1.9405 9 6 2.7834 -1.8407 0.8620 10 7 3.1010 -2.2296 -0.4465 11 6 4.2278 -2.9292 -0.6868 12 8 5.0166 -3.1356 0.2112 13 6 4.5074 -3.4549 -2.0712 14 1 4.2155 -2.7078 -2.8093 15 7 5.9419 -3.7416 -2.2055 16 6 3.7071 -4.7385 -2.3007 17 6 3.8932 -5.2040 -3.7462 18 6 3.1044 -6.4680 -3.9723 19 1 2.5283 -6.8967 -3.1656 20 6 3.1181 -7.0772 -5.2092 21 7 2.4293 -8.1800 -5.4067 22 14 4.1139 -6.3354 -6.6047 23 1 5.4874 -6.8999 -6.5873 24 1 3.4638 -6.6548 -7.9010 25 1 4.1824 -4.8617 -6.4351 26 1 -0.3633 0.4512 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3633 -1.0253 -0.0709 29 1 3.0828 1.3432 -0.0708 30 1 1.5898 1.9163 -0.8524 31 1 1.7043 1.8723 0.9234 32 1 1.0215 0.5037 2.5558 33 1 1.9133 -0.7755 4.4594 34 1 3.3562 -2.7288 4.0689 35 1 3.9159 -3.4139 1.7727 36 1 2.5100 -1.9954 -1.1791 37 1 6.2374 -4.4319 -1.5316 38 1 6.1658 -4.0344 -3.1448 39 1 2.6505 -4.5462 -2.1140 40 1 4.0608 -5.5137 -1.6209 41 1 4.9497 -5.3963 -3.9328 42 1 3.5394 -4.4288 -4.4259 43 1 2.4387 -8.6084 -6.2769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424126367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:16 Heat of formation + Delta-G solvation = -1.962414 kcal Electronic energy + Delta-G solvation = -23196.159598 eV Core-core repulsion = 19855.211292 eV Total energy + Delta-G solvation = -3340.948306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78954 -39.21101 -36.65528 -35.70998 -34.65388 -32.82651 -30.35612 -30.20678 -29.65446 -27.83717 -26.83402 -24.76691 -24.14599 -22.42807 -21.18054 -20.51320 -19.78035 -17.92507 -17.38891 -16.73355 -16.64168 -15.66575 -15.27932 -14.97987 -14.80507 -14.65870 -14.38852 -14.23641 -13.86219 -13.75993 -13.22764 -13.06558 -12.79908 -12.67595 -12.48147 -12.38573 -12.09782 -11.94567 -11.86652 -11.48447 -11.31236 -10.99013 -10.47183 -10.31990 -10.12618 -9.88065 -9.43952 -9.32680 -8.89478 -8.78306 -8.62825 -8.36764 -8.00879 -6.12336 -4.12029 1.14924 1.28016 2.76106 3.09792 3.24721 3.33102 3.34253 3.60313 3.72935 4.37087 4.72848 4.80597 4.87928 4.96875 5.00975 5.04655 5.13990 5.20542 5.24554 5.27389 5.38801 5.45359 5.53100 5.57143 5.62588 5.64752 5.78929 6.10474 6.11255 6.21256 6.29828 6.42388 6.51022 6.58519 6.63006 6.76810 7.06750 7.19568 7.20023 7.30375 7.56865 7.65186 7.74130 8.25876 8.43691 8.91623 9.48780 11.00881 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.003566 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.914637 B = 7849.418095 C = 8247.160087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.509 5.509 3 C 0.031 3.969 4 C 0.045 3.955 5 C -0.128 4.128 6 C -0.138 4.138 7 C -0.099 4.099 8 C -0.130 4.130 9 C 0.185 3.815 10 N -0.660 5.660 11 C 0.525 3.475 12 O -0.518 6.518 13 C 0.074 3.926 14 H 0.100 0.900 15 N -0.830 5.830 16 C -0.130 4.130 17 C -0.010 4.010 18 C -0.524 4.524 19 H 0.071 0.929 20 C 0.067 3.933 21 N -0.900 5.900 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.265 1.265 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.419 0.581 37 H 0.348 0.652 38 H 0.352 0.648 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.012 0.988 42 H 0.019 0.981 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.149 18.394 13.390 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.230 5.230 3 C -0.116 4.116 4 C -0.051 4.051 5 C -0.149 4.149 6 C -0.157 4.157 7 C -0.118 4.118 8 C -0.150 4.150 9 C 0.088 3.912 10 N -0.304 5.304 11 C 0.313 3.687 12 O -0.393 6.393 13 C -0.041 4.041 14 H 0.118 0.882 15 N -0.362 5.362 16 C -0.170 4.170 17 C -0.047 4.047 18 C -0.562 4.562 19 H 0.089 0.911 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.189 1.189 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.167 0.833 36 H 0.256 0.744 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.030 0.970 42 H 0.037 0.963 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.330 18.618 13.524 23.050 hybrid contribution -0.564 -0.162 -0.680 0.898 sum -1.895 18.456 12.844 22.565 Atomic orbital electron populations 1.22493 0.85884 1.02929 1.00801 1.59495 1.08467 1.14280 1.40734 1.22430 1.01124 0.87357 1.00693 1.18452 1.02189 0.95102 0.89395 1.21304 1.00847 1.00259 0.92457 1.20941 0.99501 0.96824 0.98473 1.21097 0.97343 0.96753 0.96621 1.21464 1.01481 1.01024 0.91065 1.17690 0.96125 0.92458 0.84909 1.43547 1.24519 1.54408 1.07917 1.21032 0.79591 0.76543 0.91515 1.90605 1.45978 1.56340 1.46342 1.21498 0.90954 0.99092 0.92576 0.88225 1.58724 1.13448 1.53321 1.10729 1.22217 0.99610 0.94286 1.00848 1.19570 0.96685 0.97332 0.91145 1.21059 1.29497 1.07490 0.98162 0.91057 1.25043 0.95146 0.94609 0.98629 1.69914 1.41496 1.18733 1.23754 0.86769 0.80475 0.80236 0.81735 1.20214 1.21323 1.18937 0.95113 0.90808 0.90944 0.91164 0.90871 0.95163 0.86322 0.86241 0.85724 0.83255 0.74381 0.83799 0.83290 0.91753 0.91949 0.97005 0.96259 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.34 60.06 0.56 0.78 16 2 N -0.51 -5.20 4.33 -186.66 -0.81 -6.00 16 3 C 0.03 0.27 9.39 60.07 0.56 0.83 16 4 C 0.04 0.53 4.75 -83.55 -0.40 0.13 16 5 C -0.13 -1.33 8.58 -39.41 -0.34 -1.67 16 6 C -0.14 -1.40 10.04 -39.57 -0.40 -1.80 16 7 C -0.10 -1.14 10.04 -39.57 -0.40 -1.54 16 8 C -0.13 -1.81 8.72 -39.42 -0.34 -2.16 16 9 C 0.19 2.55 6.45 -83.43 -0.54 2.02 16 10 N -0.66 -9.15 5.27 -9.71 -0.05 -9.20 16 11 C 0.52 8.36 6.89 -10.98 -0.08 8.28 16 12 O -0.52 -9.41 13.42 5.54 0.07 -9.34 16 13 C 0.07 1.17 3.21 -68.87 -0.22 0.94 16 14 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 15 N -0.83 -13.03 8.94 -5.65 -0.05 -13.08 16 16 C -0.13 -2.40 4.78 -26.73 -0.13 -2.53 16 17 C -0.01 -0.22 3.81 -27.88 -0.11 -0.32 16 18 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 19 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 20 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 21 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 22 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 26 H 0.03 0.23 7.11 -51.93 -0.37 -0.14 16 27 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.03 0.24 7.36 -51.93 -0.38 -0.15 16 32 H 0.12 1.02 7.02 -52.49 -0.37 0.65 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.15 2.34 5.79 -52.49 -0.30 2.03 16 36 H 0.42 5.20 8.28 -40.82 -0.34 4.86 16 37 H 0.35 5.53 8.58 -39.29 -0.34 5.19 16 38 H 0.35 5.33 7.55 -39.29 -0.30 5.03 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.01 0.25 6.30 -51.93 -0.33 -0.07 16 42 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 349.82 15.07 5.27 5.27 Total: -1.00 -31.63 349.82 -8.19 -39.83 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -6.49 Total: 12.71 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.25 Total: -9.98 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.14 Total: -54.78 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.34 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.63 -8.19 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424126367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.864 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds