Wall clock time and date at job start Tue Mar 31 2020 07:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 111.00199 * 2 1 4 4 C 1.39895 * 110.99875 * 123.95320 * 2 1 3 5 5 C 1.38715 * 120.09879 * 300.25058 * 4 2 1 6 6 C 1.38223 * 119.99346 * 180.27692 * 5 4 2 7 7 C 1.38281 * 120.19361 * 359.72569 * 6 5 4 8 8 C 1.38232 * 120.20308 * 359.97438 * 7 6 5 9 9 C 1.38671 * 119.99801 * 0.02562 * 8 7 6 10 10 N 1.40159 * 120.09682 * 179.97438 * 9 8 7 11 11 C 1.34780 * 119.99667 * 335.19682 * 10 9 8 12 12 O 1.21297 * 120.00084 * 354.46905 * 11 10 9 13 13 C 1.50706 * 119.99686 * 174.46174 * 11 10 9 14 14 H 1.08999 * 109.46664 * 40.00599 * 13 11 10 15 15 N 1.46899 * 109.46824 * 160.00095 * 13 11 10 16 16 C 1.52993 * 109.47545 * 280.00112 * 13 11 10 17 17 C 1.52999 * 109.47344 * 175.00238 * 16 13 11 18 18 C 1.50701 * 109.47098 * 180.02562 * 17 16 13 19 19 H 1.08003 * 120.00143 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99738 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99655 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00177 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47081 * 90.00073 * 22 20 18 24 24 H 1.48499 * 109.47405 * 210.00389 * 22 20 18 25 25 H 1.48504 * 109.47147 * 330.00328 * 22 20 18 26 26 H 1.08994 * 109.47220 * 296.04637 * 1 2 3 27 27 H 1.09003 * 109.46917 * 56.05051 * 1 2 3 28 28 H 1.09003 * 109.46915 * 176.04669 * 1 2 3 29 29 H 1.08998 * 109.47146 * 183.94945 * 3 2 1 30 30 H 1.09001 * 109.46822 * 303.95696 * 3 2 1 31 31 H 1.09007 * 109.46615 * 63.95047 * 3 2 1 32 32 H 1.08000 * 120.00271 * 0.02562 * 5 4 2 33 33 H 1.08000 * 119.90232 * 179.74992 * 6 5 4 34 34 H 1.08009 * 119.90235 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.00239 * 179.97438 * 8 7 6 36 36 H 0.96996 * 120.00161 * 155.19413 * 10 9 8 37 37 H 1.00897 * 111.00458 * 60.00172 * 15 13 11 38 38 H 1.00902 * 111.00357 * 183.95924 * 15 13 11 39 39 H 1.09005 * 109.47264 * 55.00025 * 16 13 11 40 40 H 1.09004 * 109.47216 * 295.00663 * 16 13 11 41 41 H 1.08995 * 109.47122 * 59.99691 * 17 16 13 42 42 H 1.08998 * 109.46526 * 300.00011 * 17 16 13 43 43 H 0.96997 * 119.99516 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9703 -0.7294 1.0834 5 6 1.6551 -0.3532 2.3808 6 6 2.1563 -1.0721 3.4497 7 6 2.9675 -2.1702 3.2302 8 6 3.2817 -2.5560 1.9405 9 6 2.7834 -1.8407 0.8620 10 7 3.1010 -2.2296 -0.4465 11 6 4.2278 -2.9292 -0.6868 12 8 5.0166 -3.1356 0.2112 13 6 4.5074 -3.4549 -2.0712 14 1 4.2155 -2.7078 -2.8093 15 7 5.9419 -3.7416 -2.2055 16 6 3.7071 -4.7385 -2.3007 17 6 3.8932 -5.2040 -3.7462 18 6 3.1044 -6.4680 -3.9723 19 1 2.5283 -6.8967 -3.1656 20 6 3.1181 -7.0772 -5.2092 21 7 2.4293 -8.1800 -5.4067 22 14 4.1139 -6.3354 -6.6047 23 1 5.4874 -6.8999 -6.5873 24 1 3.4638 -6.6548 -7.9010 25 1 4.1824 -4.8617 -6.4351 26 1 -0.3633 0.4512 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3633 -1.0253 -0.0709 29 1 3.0828 1.3432 -0.0708 30 1 1.5898 1.9163 -0.8524 31 1 1.7043 1.8723 0.9234 32 1 1.0215 0.5037 2.5558 33 1 1.9133 -0.7755 4.4594 34 1 3.3562 -2.7288 4.0689 35 1 3.9159 -3.4139 1.7727 36 1 2.5100 -1.9954 -1.1791 37 1 6.2374 -4.4319 -1.5316 38 1 6.1658 -4.0344 -3.1448 39 1 2.6505 -4.5462 -2.1140 40 1 4.0608 -5.5137 -1.6209 41 1 4.9497 -5.3963 -3.9328 42 1 3.5394 -4.4288 -4.4259 43 1 2.4387 -8.6084 -6.2769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424126367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:16 Heat of formation + Delta-G solvation = -24.911116 kcal Electronic energy + Delta-G solvation = -23197.154728 eV Core-core repulsion = 19855.211292 eV Total energy + Delta-G solvation = -3341.943437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.83934 -40.24897 -37.56615 -37.06809 -35.77650 -34.82279 -32.10324 -31.11884 -30.59851 -28.48285 -28.35091 -25.80318 -25.45633 -23.56696 -22.20717 -21.97935 -21.01835 -19.18397 -18.76440 -18.35004 -17.53955 -16.70614 -16.30484 -16.12830 -15.97792 -15.91030 -15.73636 -15.45979 -15.13342 -14.75693 -14.58478 -14.44370 -14.33415 -13.70303 -13.55796 -13.19588 -13.11984 -13.10377 -12.87324 -12.61836 -12.58912 -12.29858 -12.05608 -11.91882 -11.66755 -11.49105 -11.40798 -10.77517 -10.72378 -9.76816 -9.69720 -9.51785 -8.99722 -8.29623 -6.35367 0.23999 0.35164 1.39175 1.40731 1.52161 1.57083 1.99387 2.36767 2.78979 2.87478 3.06059 3.61357 3.69652 3.95950 4.05200 4.13915 4.15428 4.19684 4.39372 4.41646 4.46083 4.53344 4.58101 4.63970 4.68837 4.74766 4.86406 4.93405 4.98314 5.01635 5.23080 5.34485 5.35511 5.45584 5.50834 5.58431 5.62523 5.85289 5.91880 6.03155 6.25053 6.35542 6.46909 6.48117 6.73059 7.09152 7.29471 8.87252 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.003566 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.914637 B = 7849.418095 C = 8247.160087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.521 5.521 3 C 0.032 3.968 4 C 0.047 3.953 5 C -0.128 4.128 6 C -0.129 4.129 7 C -0.106 4.106 8 C -0.153 4.153 9 C 0.155 3.845 10 N -0.651 5.651 11 C 0.523 3.477 12 O -0.546 6.546 13 C 0.085 3.915 14 H 0.121 0.879 15 N -0.829 5.829 16 C -0.118 4.118 17 C -0.005 4.005 18 C -0.535 4.535 19 H 0.025 0.975 20 C 0.002 3.998 21 N -0.953 5.953 22 Si 0.954 3.046 23 H -0.267 1.267 24 H -0.288 1.288 25 H -0.236 1.236 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.124 0.876 36 H 0.425 0.575 37 H 0.346 0.654 38 H 0.357 0.643 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.026 0.974 42 H 0.032 0.968 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 21.513 13.389 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.243 5.243 3 C -0.114 4.114 4 C -0.049 4.049 5 C -0.148 4.148 6 C -0.148 4.148 7 C -0.125 4.125 8 C -0.174 4.174 9 C 0.059 3.941 10 N -0.294 5.294 11 C 0.311 3.689 12 O -0.423 6.423 13 C -0.030 4.030 14 H 0.139 0.861 15 N -0.361 5.361 16 C -0.158 4.158 17 C -0.042 4.042 18 C -0.573 4.573 19 H 0.044 0.956 20 C -0.194 4.194 21 N -0.594 5.594 22 Si 0.777 3.223 23 H -0.192 1.192 24 H -0.214 1.214 25 H -0.159 1.159 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.159 0.841 35 H 0.142 0.858 36 H 0.263 0.737 37 H 0.160 0.840 38 H 0.173 0.827 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.251 21.773 13.543 25.672 hybrid contribution -0.704 -1.144 -0.543 1.449 sum -1.955 20.630 13.000 24.462 Atomic orbital electron populations 1.22523 0.84713 1.02679 1.02087 1.59481 1.09507 1.15038 1.40280 1.22451 1.00304 0.86669 1.02023 1.18592 1.01269 0.94441 0.90599 1.21624 1.00596 1.00753 0.91829 1.21311 0.97919 0.95593 1.00022 1.21334 0.97586 0.97495 0.96049 1.21409 1.02317 1.01026 0.92603 1.17924 0.97816 0.93908 0.84499 1.43391 1.23810 1.53730 1.08506 1.21011 0.79944 0.76749 0.91150 1.90600 1.47070 1.57617 1.46965 1.21382 0.90482 0.97885 0.93230 0.86144 1.58739 1.13108 1.53255 1.10983 1.22021 1.00038 0.95377 0.98376 1.19494 0.96373 0.94958 0.93423 1.21434 1.29384 1.09487 0.97033 0.95637 1.26087 0.96462 0.94960 1.01924 1.70086 1.43783 1.20787 1.24707 0.85600 0.78587 0.80852 0.77252 1.19226 1.21417 1.15915 0.93971 0.89306 0.92038 0.92563 0.89242 0.94058 0.83887 0.83138 0.84061 0.85790 0.73692 0.84029 0.82746 0.92005 0.93722 0.95610 0.94923 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.34 127.69 1.19 1.58 16 2 N -0.52 -9.63 4.33 -744.48 -3.22 -12.86 16 3 C 0.03 0.47 9.39 127.69 1.20 1.67 16 4 C 0.05 1.05 4.75 38.26 0.18 1.23 16 5 C -0.13 -2.32 8.58 22.38 0.19 -2.13 16 6 C -0.13 -2.29 10.04 22.28 0.22 -2.07 16 7 C -0.11 -2.33 10.04 22.28 0.22 -2.11 16 8 C -0.15 -4.36 8.72 22.37 0.20 -4.16 16 9 C 0.15 4.25 6.45 38.21 0.25 4.50 16 10 N -0.65 -17.99 5.27 -303.01 -1.60 -19.59 16 11 C 0.52 16.72 6.89 87.66 0.60 17.32 16 12 O -0.55 -20.31 13.42 -3.08 -0.04 -20.35 16 13 C 0.09 2.61 3.21 44.17 0.14 2.75 16 14 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 15 N -0.83 -25.01 8.94 -171.80 -1.54 -26.54 16 16 C -0.12 -4.37 4.78 30.59 0.15 -4.23 16 17 C -0.01 -0.22 3.81 29.85 0.11 -0.10 16 18 C -0.54 -30.10 9.66 25.60 0.25 -29.86 16 19 H 0.03 1.61 7.99 -2.91 -0.02 1.58 16 20 C 0.00 0.13 5.47 84.65 0.46 0.60 16 21 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 22 Si 0.95 42.46 27.47 68.60 1.88 44.34 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 26 H 0.04 0.51 7.11 -2.39 -0.02 0.50 16 27 H 0.09 1.01 8.12 -2.39 -0.02 1.00 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.03 8.12 -2.39 -0.02 1.01 16 31 H 0.04 0.52 7.36 -2.38 -0.02 0.50 16 32 H 0.14 1.89 7.02 -2.91 -0.02 1.87 16 33 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 34 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 35 H 0.12 4.13 5.79 -2.91 -0.02 4.11 16 36 H 0.42 10.30 8.28 -92.71 -0.77 9.53 16 37 H 0.35 10.87 8.58 -89.70 -0.77 10.10 16 38 H 0.36 10.05 7.55 -89.69 -0.68 9.37 16 39 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.03 1.05 6.30 -2.39 -0.02 1.03 16 42 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -70.57 349.82 -0.08 -70.65 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: -1.23 Total: 38.43 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 5.37 Total: -15.01 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -6.06 Total: -118.05 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.04 Total: -20.35 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Total: -70.57 -0.08 -70.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424126367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.737 kcal (2) G-P(sol) polarization free energy of solvation -70.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds