Wall clock time and date at job start Tue Mar 31 2020 06:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47152 * 2 1 4 4 C 1.46504 * 120.00259 * 90.00484 * 3 2 1 5 5 C 1.50707 * 109.46520 * 270.00173 * 4 3 2 6 6 C 1.38227 * 119.62024 * 94.97709 * 5 4 3 7 7 C 1.38627 * 119.15702 * 179.78495 * 6 5 4 8 8 C 1.38669 * 118.42389 * 0.47826 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.49762 * 8 7 6 10 10 N 1.31856 * 119.61172 * 274.99461 * 5 4 3 11 11 C 1.34774 * 120.00232 * 269.99944 * 3 2 1 12 12 O 1.21279 * 120.00464 * 180.02562 * 11 3 2 13 13 C 1.50710 * 119.99826 * 0.02562 * 11 3 2 14 14 H 1.08999 * 109.46557 * 40.00118 * 13 11 3 15 15 N 1.46892 * 109.47288 * 159.99741 * 13 11 3 16 16 C 1.53003 * 109.46943 * 280.00234 * 13 11 3 17 17 C 1.53001 * 109.46573 * 175.00083 * 16 13 11 18 18 C 1.50701 * 109.46937 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99786 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00277 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00119 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99879 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46965 * 90.00175 * 22 20 18 24 24 H 1.48499 * 109.47144 * 210.00403 * 22 20 18 25 25 H 1.48503 * 109.47229 * 330.00278 * 22 20 18 26 26 H 1.08993 * 109.47042 * 60.00277 * 1 2 3 27 27 H 1.09002 * 109.46973 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46848 * 299.99629 * 1 2 3 29 29 H 1.09003 * 109.47064 * 239.99675 * 2 1 3 30 30 H 1.09003 * 109.47163 * 120.00242 * 2 1 3 31 31 H 1.08993 * 109.47601 * 149.99751 * 4 3 2 32 32 H 1.08997 * 109.47191 * 29.99284 * 4 3 2 33 33 H 1.07998 * 120.41916 * 359.97438 * 6 5 4 34 34 H 1.08008 * 120.78688 * 180.22921 * 7 6 5 35 35 H 1.08002 * 120.42244 * 179.78279 * 8 7 6 36 36 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 37 37 H 1.00902 * 111.00336 * 296.05081 * 15 13 11 38 38 H 1.00907 * 110.99904 * 60.00014 * 15 13 11 39 39 H 1.08998 * 109.46664 * 294.99250 * 16 13 11 40 40 H 1.08994 * 109.47397 * 54.99750 * 16 13 11 41 41 H 1.09003 * 109.47379 * 299.99125 * 17 16 13 42 42 H 1.08994 * 109.47531 * 59.99749 * 17 16 13 43 43 H 0.97006 * 119.99850 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 1.0067 2.7822 1.7038 6 6 0.1410 2.1615 2.5847 7 6 -1.0092 2.8255 2.9820 8 6 -1.2519 4.0905 2.4683 9 6 -0.3403 4.6476 1.5919 10 7 0.7463 3.9884 1.2393 11 6 2.2430 2.0165 -1.1671 12 8 2.6477 3.1598 -1.1672 13 6 1.9913 1.3063 -2.4723 14 1 1.0804 0.7128 -2.3932 15 7 1.8389 2.2961 -3.5470 16 6 3.1729 0.3873 -2.7890 17 6 2.8634 -0.4259 -4.0475 18 6 4.0274 -1.3306 -4.3599 19 1 4.9008 -1.3256 -3.7245 20 6 3.9780 -2.1638 -5.4572 21 7 4.9936 -2.9536 -5.7295 22 14 2.4676 -2.1717 -6.5565 23 1 2.6369 -1.1677 -7.6375 24 1 2.2984 -3.5201 -7.1554 25 1 1.2670 -1.8338 -5.7506 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.0645 2.7984 1.1384 32 1 2.5506 1.3452 2.0284 33 1 0.3595 1.1731 2.9611 34 1 -1.7020 2.3668 3.6721 35 1 -2.1398 4.6354 2.7533 36 1 -0.5199 5.6340 1.1906 37 1 1.0262 2.8741 -3.3937 38 1 2.6708 2.8594 -3.6404 39 1 4.0664 0.9889 -2.9558 40 1 3.3416 -0.2894 -1.9514 41 1 1.9698 -1.0275 -3.8808 42 1 2.6947 0.2509 -4.8851 43 1 4.9586 -3.5401 -6.5014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424145347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:19 Heat of formation + Delta-G solvation = -4.201597 kcal Electronic energy + Delta-G solvation = -23596.310078 eV Core-core repulsion = 20255.264673 eV Total energy + Delta-G solvation = -3341.045404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.69964 -39.69853 -36.16395 -35.40455 -32.93825 -32.69851 -32.22113 -30.51276 -30.41023 -27.72483 -26.07420 -23.94912 -23.73721 -22.92903 -21.98018 -20.09324 -19.03585 -17.33685 -17.14222 -16.71631 -16.50741 -16.03735 -15.89747 -15.47058 -14.67309 -14.39067 -14.11077 -13.94197 -13.70246 -13.57140 -13.35445 -13.19040 -12.86873 -12.55460 -12.39797 -12.25419 -11.94061 -11.78164 -11.62687 -11.24683 -10.87448 -10.79380 -10.25943 -10.11520 -9.92271 -9.68991 -9.65213 -9.55461 -9.28889 -9.09287 -8.70639 -8.48292 -8.30957 -5.98143 -3.95561 0.79716 1.03877 2.80520 3.00075 3.38649 3.45100 3.50600 3.69517 4.06510 4.43257 4.52587 4.58161 4.63912 4.78550 4.85800 4.88226 4.94033 5.10239 5.22127 5.28144 5.34404 5.36941 5.42449 5.48360 5.59965 5.63961 5.72006 5.76846 5.85909 5.88534 6.08412 6.31149 6.42349 6.48447 6.54985 6.90103 7.28108 7.40482 7.47641 7.59654 7.71980 7.84514 7.88227 8.33194 8.59634 9.06796 9.65111 11.15346 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.003568 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.985407 B = 7844.646047 C = 8005.067320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 N -0.608 5.608 4 C 0.161 3.839 5 C 0.116 3.884 6 C -0.162 4.162 7 C -0.079 4.079 8 C -0.176 4.176 9 C 0.097 3.903 10 N -0.457 5.457 11 C 0.486 3.514 12 O -0.530 6.530 13 C 0.074 3.926 14 H 0.096 0.904 15 N -0.811 5.811 16 C -0.089 4.089 17 C -0.004 4.004 18 C -0.520 4.520 19 H 0.069 0.931 20 C 0.066 3.934 21 N -0.907 5.907 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.264 1.264 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.153 0.847 37 H 0.334 0.666 38 H 0.349 0.651 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.012 0.988 42 H 0.029 0.971 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.998 10.011 19.452 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.028 4.028 3 N -0.342 5.342 4 C 0.037 3.963 5 C -0.024 4.024 6 C -0.182 4.182 7 C -0.105 4.105 8 C -0.196 4.196 9 C -0.060 4.060 10 N -0.166 5.166 11 C 0.273 3.727 12 O -0.406 6.406 13 C -0.042 4.042 14 H 0.114 0.886 15 N -0.339 5.339 16 C -0.127 4.127 17 C -0.041 4.041 18 C -0.558 4.558 19 H 0.087 0.913 20 C -0.135 4.135 21 N -0.546 5.546 22 Si 0.709 3.291 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.189 1.189 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.030 0.970 42 H 0.048 0.952 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.175 10.245 18.213 24.703 hybrid contribution -1.437 0.201 0.893 1.704 sum -14.612 10.446 19.106 26.223 Atomic orbital electron populations 1.22305 0.96166 1.02465 1.02366 1.21834 0.94367 0.82017 1.04624 1.48070 1.66898 1.14133 1.05081 1.20259 0.93571 0.96296 0.86180 1.21747 0.96826 0.90968 0.92824 1.21981 0.95530 1.01146 0.99565 1.21559 0.96551 0.94517 0.97918 1.22167 1.01156 0.96756 0.99555 1.22841 0.89564 0.99539 0.94051 1.67642 1.19137 1.07844 1.21935 1.22593 0.76294 0.87162 0.86688 1.90682 1.44798 1.17845 1.87227 1.21901 1.02404 0.94718 0.85141 0.88599 1.59062 1.09110 1.22006 1.43717 1.21515 0.94351 0.96282 1.00554 1.19481 0.96804 0.94707 0.93139 1.21183 1.02461 1.20748 1.11430 0.91279 1.25010 0.96013 0.95097 0.97374 1.69927 1.30890 1.25397 1.28393 0.86746 0.84243 0.76917 0.81158 1.20285 1.21734 1.18904 0.92515 0.91191 0.92460 0.88356 0.90182 0.88241 0.89058 0.84848 0.84937 0.84970 0.82940 0.85432 0.83658 0.92176 0.92029 0.96979 0.95250 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.10 37.16 0.38 -1.34 16 2 C 0.09 1.02 5.73 -4.04 -0.02 0.99 16 3 N -0.61 -7.87 2.46 -175.06 -0.43 -8.30 16 4 C 0.16 1.87 5.76 -5.19 -0.03 1.84 16 5 C 0.12 1.34 6.21 -82.58 -0.51 0.83 16 6 C -0.16 -1.42 7.76 -39.44 -0.31 -1.72 16 7 C -0.08 -0.61 10.18 -39.28 -0.40 -1.01 16 8 C -0.18 -1.43 10.11 -39.44 -0.40 -1.83 16 9 C 0.10 1.02 11.18 -17.55 -0.20 0.82 16 10 N -0.46 -6.10 10.27 -9.47 -0.10 -6.20 16 11 C 0.49 7.83 6.91 -10.98 -0.08 7.75 16 12 O -0.53 -10.01 15.83 5.56 0.09 -9.92 16 13 C 0.07 1.23 2.31 -68.86 -0.16 1.07 16 14 H 0.10 1.50 6.12 -51.93 -0.32 1.19 16 15 N -0.81 -13.47 8.44 -5.65 -0.05 -13.52 16 16 C -0.09 -1.74 4.45 -26.73 -0.12 -1.86 16 17 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 18 C -0.52 -14.80 9.66 -34.44 -0.33 -15.14 16 19 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.91 -28.16 13.96 55.43 0.77 -27.39 16 22 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 26 H 0.06 0.64 7.15 -51.93 -0.37 0.27 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.53 5.80 -51.93 -0.30 0.23 16 29 H 0.10 1.22 4.83 -51.93 -0.25 0.97 16 30 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 31 H 0.10 1.36 7.42 -51.93 -0.39 0.98 16 32 H 0.09 0.76 7.79 -51.93 -0.40 0.35 16 33 H 0.13 0.86 8.03 -52.49 -0.42 0.44 16 34 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.33 4.96 9.06 -39.29 -0.36 4.61 16 38 H 0.35 5.93 8.58 -39.29 -0.34 5.59 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.14 6.43 -51.93 -0.33 0.80 16 41 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 42 H 0.03 0.72 7.18 -51.93 -0.37 0.35 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -34.78 349.18 -7.84 -42.62 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.34 Total: 8.02 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.38 Total: -7.97 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.20 Total: -55.41 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.78 -7.84 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424145347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.415 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds