Wall clock time and date at job start Tue Mar 31 2020 06:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47152 * 2 1 4 4 C 1.46504 * 120.00259 * 90.00484 * 3 2 1 5 5 C 1.50707 * 109.46520 * 270.00173 * 4 3 2 6 6 C 1.38227 * 119.62024 * 94.97709 * 5 4 3 7 7 C 1.38627 * 119.15702 * 179.78495 * 6 5 4 8 8 C 1.38669 * 118.42389 * 0.47826 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.49762 * 8 7 6 10 10 N 1.31856 * 119.61172 * 274.99461 * 5 4 3 11 11 C 1.34774 * 120.00232 * 269.99944 * 3 2 1 12 12 O 1.21279 * 120.00464 * 180.02562 * 11 3 2 13 13 C 1.50710 * 119.99826 * 0.02562 * 11 3 2 14 14 H 1.08999 * 109.46557 * 40.00118 * 13 11 3 15 15 N 1.46892 * 109.47288 * 159.99741 * 13 11 3 16 16 C 1.53003 * 109.46943 * 280.00234 * 13 11 3 17 17 C 1.53001 * 109.46573 * 175.00083 * 16 13 11 18 18 C 1.50701 * 109.46937 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99786 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00277 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00119 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99879 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46965 * 90.00175 * 22 20 18 24 24 H 1.48499 * 109.47144 * 210.00403 * 22 20 18 25 25 H 1.48503 * 109.47229 * 330.00278 * 22 20 18 26 26 H 1.08993 * 109.47042 * 60.00277 * 1 2 3 27 27 H 1.09002 * 109.46973 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46848 * 299.99629 * 1 2 3 29 29 H 1.09003 * 109.47064 * 239.99675 * 2 1 3 30 30 H 1.09003 * 109.47163 * 120.00242 * 2 1 3 31 31 H 1.08993 * 109.47601 * 149.99751 * 4 3 2 32 32 H 1.08997 * 109.47191 * 29.99284 * 4 3 2 33 33 H 1.07998 * 120.41916 * 359.97438 * 6 5 4 34 34 H 1.08008 * 120.78688 * 180.22921 * 7 6 5 35 35 H 1.08002 * 120.42244 * 179.78279 * 8 7 6 36 36 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 37 37 H 1.00902 * 111.00336 * 296.05081 * 15 13 11 38 38 H 1.00907 * 110.99904 * 60.00014 * 15 13 11 39 39 H 1.08998 * 109.46664 * 294.99250 * 16 13 11 40 40 H 1.08994 * 109.47397 * 54.99750 * 16 13 11 41 41 H 1.09003 * 109.47379 * 299.99125 * 17 16 13 42 42 H 1.08994 * 109.47531 * 59.99749 * 17 16 13 43 43 H 0.97006 * 119.99850 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 1.0067 2.7822 1.7038 6 6 0.1410 2.1615 2.5847 7 6 -1.0092 2.8255 2.9820 8 6 -1.2519 4.0905 2.4683 9 6 -0.3403 4.6476 1.5919 10 7 0.7463 3.9884 1.2393 11 6 2.2430 2.0165 -1.1671 12 8 2.6477 3.1598 -1.1672 13 6 1.9913 1.3063 -2.4723 14 1 1.0804 0.7128 -2.3932 15 7 1.8389 2.2961 -3.5470 16 6 3.1729 0.3873 -2.7890 17 6 2.8634 -0.4259 -4.0475 18 6 4.0274 -1.3306 -4.3599 19 1 4.9008 -1.3256 -3.7245 20 6 3.9780 -2.1638 -5.4572 21 7 4.9936 -2.9536 -5.7295 22 14 2.4676 -2.1717 -6.5565 23 1 2.6369 -1.1677 -7.6375 24 1 2.2984 -3.5201 -7.1554 25 1 1.2670 -1.8338 -5.7506 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.0645 2.7984 1.1384 32 1 2.5506 1.3452 2.0284 33 1 0.3595 1.1731 2.9611 34 1 -1.7020 2.3668 3.6721 35 1 -2.1398 4.6354 2.7533 36 1 -0.5199 5.6340 1.1906 37 1 1.0262 2.8741 -3.3937 38 1 2.6708 2.8594 -3.6404 39 1 4.0664 0.9889 -2.9558 40 1 3.3416 -0.2894 -1.9514 41 1 1.9698 -1.0275 -3.8808 42 1 2.6947 0.2509 -4.8851 43 1 4.9586 -3.5401 -6.5014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424145347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:18 Heat of formation + Delta-G solvation = -29.319284 kcal Electronic energy + Delta-G solvation = -23597.399262 eV Core-core repulsion = 20255.264673 eV Total energy + Delta-G solvation = -3342.134589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61888 -40.69308 -37.23151 -36.92799 -34.81262 -33.56650 -32.98976 -32.30217 -31.30570 -28.98916 -27.47789 -25.22989 -24.43585 -23.99557 -22.99054 -21.81143 -20.21627 -18.88736 -18.39403 -17.85795 -17.45311 -17.02775 -16.85061 -16.60133 -16.19352 -15.70439 -15.44918 -15.01140 -14.70592 -14.62497 -14.59617 -14.19080 -14.08241 -13.98927 -13.58981 -13.51827 -13.13566 -12.81484 -12.76680 -12.57723 -12.31628 -12.10642 -11.91041 -11.71950 -11.52731 -11.26518 -11.07718 -10.79334 -10.70433 -10.41427 -10.03858 -9.70612 -9.61585 -8.24128 -6.27138 0.11093 0.39638 1.41518 1.42955 1.55289 1.56178 2.01658 2.41846 2.95329 3.12464 3.33579 3.45880 3.64640 3.81166 4.01354 4.03073 4.06054 4.17368 4.24162 4.24961 4.33840 4.41441 4.54095 4.58406 4.71903 4.76129 4.81513 4.83716 4.85131 4.97789 5.15153 5.20891 5.26563 5.31426 5.51115 5.55112 5.64654 5.72942 5.79859 6.02361 6.32563 6.33826 6.43936 6.80956 7.12738 7.14438 7.37355 8.92699 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.003568 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.985407 B = 7844.646047 C = 8005.067320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.088 3.912 3 N -0.599 5.599 4 C 0.159 3.841 5 C 0.092 3.908 6 C -0.156 4.156 7 C -0.079 4.079 8 C -0.168 4.168 9 C 0.073 3.927 10 N -0.504 5.504 11 C 0.484 3.516 12 O -0.566 6.566 13 C 0.085 3.915 14 H 0.111 0.889 15 N -0.817 5.817 16 C -0.079 4.079 17 C 0.005 3.995 18 C -0.529 4.529 19 H 0.030 0.970 20 C 0.004 3.996 21 N -0.954 5.954 22 Si 0.951 3.049 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.242 1.242 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.344 0.656 38 H 0.345 0.655 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.271 9.440 21.202 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.033 4.033 3 N -0.332 5.332 4 C 0.036 3.964 5 C -0.047 4.047 6 C -0.176 4.176 7 C -0.104 4.104 8 C -0.188 4.188 9 C -0.084 4.084 10 N -0.214 5.214 11 C 0.271 3.729 12 O -0.444 6.444 13 C -0.031 4.031 14 H 0.128 0.872 15 N -0.346 5.346 16 C -0.117 4.117 17 C -0.033 4.033 18 C -0.567 4.567 19 H 0.048 0.952 20 C -0.192 4.192 21 N -0.595 5.595 22 Si 0.775 3.225 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.166 1.166 26 H 0.057 0.943 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.179 0.821 34 H 0.185 0.815 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.472 9.662 20.007 27.658 hybrid contribution -0.368 0.383 0.458 0.702 sum -16.841 10.045 20.465 28.343 Atomic orbital electron populations 1.22248 0.94971 1.03476 1.01904 1.22042 0.95316 0.80613 1.05377 1.48088 1.65532 1.14811 1.04766 1.20403 0.93343 0.96557 0.86115 1.21724 0.97432 0.91043 0.94472 1.22236 0.95046 1.02068 0.98230 1.22014 0.96550 0.94157 0.97724 1.22492 1.01203 0.97105 0.98013 1.23113 0.89816 1.00161 0.95304 1.67531 1.20891 1.09290 1.23714 1.22382 0.76326 0.86736 0.87486 1.90668 1.46644 1.19318 1.87770 1.21686 1.01360 0.94350 0.85711 0.87177 1.59063 1.09425 1.22221 1.43891 1.21302 0.94883 0.96301 0.99195 1.19349 0.95090 0.94152 0.94694 1.21532 1.02807 1.21543 1.10833 0.95164 1.25971 0.99442 0.94649 0.99118 1.70078 1.33410 1.26621 1.29406 0.85644 0.80645 0.77148 0.79067 1.19951 1.21102 1.16551 0.94348 0.89377 0.91539 0.90067 0.86991 0.91311 0.85468 0.82139 0.81543 0.82123 0.82316 0.84293 0.84144 0.94286 0.91102 0.95802 0.95763 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 10.10 71.98 0.73 -2.05 16 2 C 0.09 1.68 5.73 86.38 0.49 2.18 16 3 N -0.60 -14.90 2.46 -826.14 -2.03 -16.93 16 4 C 0.16 3.55 5.76 85.63 0.49 4.04 16 5 C 0.09 2.01 6.21 42.55 0.26 2.27 16 6 C -0.16 -2.22 7.76 22.36 0.17 -2.04 16 7 C -0.08 -0.91 10.18 22.47 0.23 -0.68 16 8 C -0.17 -2.27 10.11 22.36 0.23 -2.04 16 9 C 0.07 1.47 11.18 84.67 0.95 2.42 16 10 N -0.50 -13.47 10.27 -183.88 -1.89 -15.36 16 11 C 0.48 15.64 6.91 87.66 0.61 16.24 16 12 O -0.57 -22.03 15.83 -3.03 -0.05 -22.07 16 13 C 0.08 2.76 2.31 44.17 0.10 2.86 16 14 H 0.11 3.28 6.12 -2.39 -0.01 3.27 16 15 N -0.82 -26.97 8.44 -171.80 -1.45 -28.42 16 16 C -0.08 -3.09 4.45 30.60 0.14 -2.95 16 17 C 0.00 0.22 3.93 29.85 0.12 0.33 16 18 C -0.53 -30.69 9.66 25.60 0.25 -30.44 16 19 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 20 C 0.00 0.26 5.47 84.65 0.46 0.73 16 21 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 22 Si 0.95 45.07 27.47 68.60 1.88 46.95 16 23 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.24 -10.53 6.54 99.48 0.65 -9.88 16 26 H 0.04 0.78 7.15 -2.39 -0.02 0.76 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 0.98 5.80 -2.39 -0.01 0.97 16 29 H 0.08 1.86 4.83 -2.39 -0.01 1.85 16 30 H 0.11 1.45 7.89 -2.39 -0.02 1.43 16 31 H 0.07 1.95 7.42 -2.39 -0.02 1.94 16 32 H 0.13 1.79 7.79 -2.39 -0.02 1.78 16 33 H 0.16 1.31 8.03 -2.91 -0.02 1.29 16 34 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.34 10.09 9.06 -89.69 -0.81 9.28 16 38 H 0.35 11.94 8.58 -89.69 -0.77 11.17 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 2.62 6.43 -2.39 -0.02 2.60 16 41 H 0.02 1.06 7.20 -2.39 -0.02 1.05 16 42 H 0.02 1.16 7.18 -2.39 -0.02 1.14 16 43 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -78.32 349.18 1.39 -76.93 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.61 Total: 28.23 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 5.23 Total: -9.14 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -5.07 Total: -120.90 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.07 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -78.32 1.39 -76.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424145347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.615 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds