Wall clock time and date at job start Tue Mar 31 2020 07:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00015 * 2 1 4 4 C 1.53002 * 109.46842 * 270.00009 * 3 2 1 5 5 C 1.50703 * 109.47017 * 180.02562 * 4 3 2 6 6 C 1.38651 * 120.78959 * 269.72211 * 5 4 3 7 7 C 1.38203 * 119.16380 * 179.79780 * 6 5 4 8 8 N 1.31873 * 120.76314 * 0.48562 * 7 6 5 9 9 C 1.31870 * 121.72244 * 359.74018 * 8 7 6 10 10 C 1.38198 * 120.76842 * 0.02638 * 9 8 7 11 11 C 1.34781 * 119.99740 * 180.02562 * 2 1 3 12 12 O 1.21275 * 119.99676 * 180.02562 * 11 2 1 13 13 C 1.50703 * 119.99971 * 359.97438 * 11 2 1 14 14 H 1.09002 * 109.47083 * 320.00492 * 13 11 2 15 15 N 1.46898 * 109.47113 * 200.00293 * 13 11 2 16 16 C 1.53000 * 109.46801 * 80.00207 * 13 11 2 17 17 C 1.52997 * 109.47060 * 184.99876 * 16 13 11 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00362 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99850 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47052 * 89.99717 * 22 20 18 24 24 H 1.48495 * 109.47307 * 209.99656 * 22 20 18 25 25 H 1.48500 * 109.47143 * 330.00164 * 22 20 18 26 26 H 1.09001 * 109.46692 * 270.00187 * 1 2 3 27 27 H 1.09007 * 109.46709 * 29.99949 * 1 2 3 28 28 H 1.08998 * 109.47293 * 150.00019 * 1 2 3 29 29 H 1.08994 * 109.47518 * 29.99992 * 3 2 1 30 30 H 1.09001 * 109.46944 * 150.00405 * 3 2 1 31 31 H 1.09001 * 109.47411 * 300.00062 * 4 3 2 32 32 H 1.08999 * 109.47539 * 60.00377 * 4 3 2 33 33 H 1.07998 * 120.42090 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.62128 * 180.25234 * 7 6 5 35 35 H 1.08003 * 119.61599 * 180.02562 * 9 8 7 36 36 H 1.08004 * 120.42116 * 179.97438 * 10 9 8 37 37 H 1.00901 * 110.99892 * 176.04953 * 15 13 11 38 38 H 1.00899 * 111.00057 * 300.00501 * 15 13 11 39 39 H 1.09002 * 109.47398 * 305.00045 * 16 13 11 40 40 H 1.09001 * 109.47194 * 65.00225 * 16 13 11 41 41 H 1.09002 * 109.47153 * 300.00319 * 17 16 13 42 42 H 1.08998 * 109.47533 * 59.99948 * 17 16 13 43 43 H 0.96994 * 119.99814 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2066 3.0151 -1.4426 6 6 2.5305 4.2256 -1.4482 7 6 3.2556 5.4021 -1.4438 8 7 4.5742 5.3817 -1.4440 9 6 5.2502 4.2494 -1.4432 10 6 4.5930 3.0337 -1.4428 11 6 2.1389 -1.1673 -0.0005 12 8 3.3516 -1.1673 -0.0001 13 6 1.3853 -2.4724 -0.0005 14 1 0.5221 -2.3935 0.6603 15 7 2.2677 -3.5473 0.4727 16 6 0.9129 -2.7884 -1.4210 17 6 0.0430 -4.0468 -1.4010 18 6 -0.4219 -4.3586 -2.8002 19 1 -0.1260 -3.7229 -3.6217 20 6 -1.2240 -5.4558 -3.0319 21 7 -1.6292 -5.7281 -4.2530 22 14 -1.7339 -6.5565 -1.6113 23 1 -3.0075 -6.0588 -1.0319 24 1 -1.9234 -7.9445 -2.1038 25 1 -0.6765 -6.5411 -0.5688 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6085 2.0284 0.5138 30 1 3.1500 1.1383 0.5138 31 1 3.0416 0.9507 -1.9564 32 1 1.5001 1.8407 -1.9564 33 1 1.4507 4.2489 -1.4531 34 1 2.7365 6.3491 -1.4440 35 1 6.3300 4.2724 -1.4430 36 1 5.1522 2.1097 -1.4426 37 1 1.7677 -4.4208 0.5431 38 1 3.0761 -3.6404 -0.1239 39 1 0.3311 -1.9506 -1.8054 40 1 1.7779 -2.9549 -2.0630 41 1 0.6248 -4.8847 -1.0167 42 1 -0.8220 -3.8805 -0.7591 43 1 -2.1938 -6.4998 -4.4158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424150998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:14 Heat of formation + Delta-G solvation = -11.114807 kcal Electronic energy + Delta-G solvation = -22749.301885 eV Core-core repulsion = 19407.956702 eV Total energy + Delta-G solvation = -3341.345184 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50153 -39.91673 -36.34535 -35.62962 -34.13898 -32.84399 -31.44100 -30.37871 -30.04123 -27.06141 -26.73309 -24.80622 -23.69707 -23.01821 -21.65296 -20.38305 -18.99117 -17.54445 -17.01653 -16.75415 -16.56201 -16.17724 -15.80837 -15.18680 -14.81059 -14.42893 -14.26984 -14.06395 -14.01519 -13.61879 -13.47289 -13.22077 -12.80923 -12.71320 -12.61693 -12.50435 -12.28058 -11.97122 -11.84735 -11.39360 -11.10211 -11.01293 -10.39902 -10.12442 -9.92899 -9.90231 -9.74072 -9.41023 -9.40388 -9.35864 -8.70793 -8.66169 -8.36016 -6.15800 -4.15733 0.88649 0.98072 2.77353 2.93498 3.21423 3.30440 3.31253 3.57130 4.21732 4.33751 4.41543 4.45388 4.61564 4.83335 4.89769 4.96313 4.97165 5.02756 5.09016 5.17135 5.23963 5.37170 5.38644 5.43226 5.50386 5.55829 5.61351 5.67328 5.74060 5.87998 6.08906 6.13960 6.26401 6.44249 6.46568 6.59562 7.04294 7.15636 7.21887 7.45522 7.62209 7.72163 7.73930 8.28990 8.40014 8.87892 9.45335 10.97362 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.002942 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.222923 B = 9516.028171 C = 9890.661143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.620 5.620 3 C 0.126 3.874 4 C -0.102 4.102 5 C -0.032 4.032 6 C -0.171 4.171 7 C 0.097 3.903 8 N -0.492 5.492 9 C 0.099 3.901 10 C -0.166 4.166 11 C 0.527 3.473 12 O -0.534 6.534 13 C 0.071 3.929 14 H 0.097 0.903 15 N -0.831 5.831 16 C -0.131 4.131 17 C -0.010 4.010 18 C -0.525 4.525 19 H 0.071 0.929 20 C 0.068 3.932 21 N -0.900 5.900 22 Si 0.881 3.119 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.265 1.265 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.137 0.863 37 H 0.351 0.649 38 H 0.348 0.652 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.013 18.002 8.832 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.355 5.355 3 C 0.002 3.998 4 C -0.140 4.140 5 C -0.040 4.040 6 C -0.191 4.191 7 C -0.060 4.060 8 N -0.201 5.201 9 C -0.058 4.058 10 C -0.186 4.186 11 C 0.316 3.684 12 O -0.409 6.409 13 C -0.044 4.044 14 H 0.115 0.885 15 N -0.363 5.363 16 C -0.171 4.171 17 C -0.048 4.048 18 C -0.562 4.562 19 H 0.089 0.911 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.190 1.190 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.152 0.848 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.155 0.845 37 H 0.165 0.835 38 H 0.161 0.839 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.091 19.080 9.405 22.423 hybrid contribution -1.242 -1.856 -0.440 2.276 sum 5.850 17.224 8.966 20.279 Atomic orbital electron populations 1.22014 0.79063 1.04311 1.02097 1.47836 1.07197 1.05575 1.74869 1.21306 0.98202 0.84954 0.95292 1.21067 1.00637 0.93585 0.98718 1.20252 0.93947 0.95246 0.94591 1.22085 1.01493 0.92921 1.02590 1.22750 0.89906 0.98120 0.95216 1.67676 1.09338 1.30757 1.12350 1.22775 1.00463 0.87577 0.94979 1.22174 0.94679 1.00120 1.01608 1.20848 0.87936 0.85225 0.74422 1.90629 1.14095 1.87279 1.48934 1.21551 0.95203 0.89474 0.98201 0.88495 1.58743 1.10983 1.09066 1.57506 1.22255 1.00715 1.00870 0.93237 1.19572 0.94396 0.92475 0.98317 1.21050 1.30972 1.11774 0.92449 0.91081 1.25044 0.95497 0.97321 0.95553 1.69908 1.35647 1.28323 1.19981 0.86767 0.79381 0.80091 0.82951 1.20236 1.21318 1.18962 0.92483 0.91039 0.89413 0.90534 0.89726 0.89754 0.90108 0.84770 0.82842 0.82753 0.84509 0.83450 0.83877 0.91706 0.92014 0.96572 0.96794 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 9.85 59.85 0.59 1.25 16 2 N -0.62 -7.54 2.87 -181.57 -0.52 -8.06 16 3 C 0.13 1.31 5.39 -4.04 -0.02 1.29 16 4 C -0.10 -1.01 5.72 -27.88 -0.16 -1.17 16 5 C -0.03 -0.30 5.17 -104.32 -0.54 -0.84 16 6 C -0.17 -1.44 9.82 -39.44 -0.39 -1.83 16 7 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 8 N -0.49 -5.30 10.36 -13.25 -0.14 -5.44 16 9 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 10 C -0.17 -1.62 9.82 -39.44 -0.39 -2.00 16 11 C 0.53 8.19 6.93 -10.98 -0.08 8.11 16 12 O -0.53 -9.76 15.83 5.56 0.09 -9.68 16 13 C 0.07 1.10 2.37 -68.86 -0.16 0.94 16 14 H 0.10 1.39 7.21 -51.93 -0.37 1.02 16 15 N -0.83 -13.21 8.94 -5.65 -0.05 -13.26 16 16 C -0.13 -2.37 4.45 -26.73 -0.12 -2.49 16 17 C -0.01 -0.22 3.81 -27.89 -0.11 -0.33 16 18 C -0.52 -14.18 9.66 -34.44 -0.33 -14.51 16 19 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 20 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 22 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.54 8.07 -51.93 -0.42 0.13 16 28 H 0.09 0.98 4.83 -51.93 -0.25 0.73 16 29 H 0.08 0.63 8.07 -51.93 -0.42 0.22 16 30 H 0.08 1.02 7.42 -51.93 -0.39 0.64 16 31 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.35 5.40 7.55 -39.29 -0.30 5.10 16 38 H 0.35 5.63 8.58 -39.29 -0.34 5.30 16 39 H 0.06 1.13 6.43 -51.93 -0.33 0.79 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.02 0.35 5.92 -51.93 -0.31 0.04 16 42 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -32.81 353.67 -7.86 -40.67 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.48 Total: 8.95 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.19 Total: -8.35 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.06 Total: -52.93 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.81 -7.86 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424150998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.555 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds