Wall clock time and date at job start Tue Mar 31 2020 07:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00015 * 2 1 4 4 C 1.53002 * 109.46842 * 270.00009 * 3 2 1 5 5 C 1.50703 * 109.47017 * 180.02562 * 4 3 2 6 6 C 1.38651 * 120.78959 * 269.72211 * 5 4 3 7 7 C 1.38203 * 119.16380 * 179.79780 * 6 5 4 8 8 N 1.31873 * 120.76314 * 0.48562 * 7 6 5 9 9 C 1.31870 * 121.72244 * 359.74018 * 8 7 6 10 10 C 1.38198 * 120.76842 * 0.02638 * 9 8 7 11 11 C 1.34781 * 119.99740 * 180.02562 * 2 1 3 12 12 O 1.21275 * 119.99676 * 180.02562 * 11 2 1 13 13 C 1.50703 * 119.99971 * 359.97438 * 11 2 1 14 14 H 1.09002 * 109.47083 * 320.00492 * 13 11 2 15 15 N 1.46898 * 109.47113 * 200.00293 * 13 11 2 16 16 C 1.53000 * 109.46801 * 80.00207 * 13 11 2 17 17 C 1.52997 * 109.47060 * 184.99876 * 16 13 11 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00362 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99850 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47052 * 89.99717 * 22 20 18 24 24 H 1.48495 * 109.47307 * 209.99656 * 22 20 18 25 25 H 1.48500 * 109.47143 * 330.00164 * 22 20 18 26 26 H 1.09001 * 109.46692 * 270.00187 * 1 2 3 27 27 H 1.09007 * 109.46709 * 29.99949 * 1 2 3 28 28 H 1.08998 * 109.47293 * 150.00019 * 1 2 3 29 29 H 1.08994 * 109.47518 * 29.99992 * 3 2 1 30 30 H 1.09001 * 109.46944 * 150.00405 * 3 2 1 31 31 H 1.09001 * 109.47411 * 300.00062 * 4 3 2 32 32 H 1.08999 * 109.47539 * 60.00377 * 4 3 2 33 33 H 1.07998 * 120.42090 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.62128 * 180.25234 * 7 6 5 35 35 H 1.08003 * 119.61599 * 180.02562 * 9 8 7 36 36 H 1.08004 * 120.42116 * 179.97438 * 10 9 8 37 37 H 1.00901 * 110.99892 * 176.04953 * 15 13 11 38 38 H 1.00899 * 111.00057 * 300.00501 * 15 13 11 39 39 H 1.09002 * 109.47398 * 305.00045 * 16 13 11 40 40 H 1.09001 * 109.47194 * 65.00225 * 16 13 11 41 41 H 1.09002 * 109.47153 * 300.00319 * 17 16 13 42 42 H 1.08998 * 109.47533 * 59.99948 * 17 16 13 43 43 H 0.96994 * 119.99814 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2066 3.0151 -1.4426 6 6 2.5305 4.2256 -1.4482 7 6 3.2556 5.4021 -1.4438 8 7 4.5742 5.3817 -1.4440 9 6 5.2502 4.2494 -1.4432 10 6 4.5930 3.0337 -1.4428 11 6 2.1389 -1.1673 -0.0005 12 8 3.3516 -1.1673 -0.0001 13 6 1.3853 -2.4724 -0.0005 14 1 0.5221 -2.3935 0.6603 15 7 2.2677 -3.5473 0.4727 16 6 0.9129 -2.7884 -1.4210 17 6 0.0430 -4.0468 -1.4010 18 6 -0.4219 -4.3586 -2.8002 19 1 -0.1260 -3.7229 -3.6217 20 6 -1.2240 -5.4558 -3.0319 21 7 -1.6292 -5.7281 -4.2530 22 14 -1.7339 -6.5565 -1.6113 23 1 -3.0075 -6.0588 -1.0319 24 1 -1.9234 -7.9445 -2.1038 25 1 -0.6765 -6.5411 -0.5688 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6085 2.0284 0.5138 30 1 3.1500 1.1383 0.5138 31 1 3.0416 0.9507 -1.9564 32 1 1.5001 1.8407 -1.9564 33 1 1.4507 4.2489 -1.4531 34 1 2.7365 6.3491 -1.4440 35 1 6.3300 4.2724 -1.4430 36 1 5.1522 2.1097 -1.4426 37 1 1.7677 -4.4208 0.5431 38 1 3.0761 -3.6404 -0.1239 39 1 0.3311 -1.9506 -1.8054 40 1 1.7779 -2.9549 -2.0630 41 1 0.6248 -4.8847 -1.0167 42 1 -0.8220 -3.8805 -0.7591 43 1 -2.1938 -6.4998 -4.4158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424150998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:14 Heat of formation + Delta-G solvation = -34.003786 kcal Electronic energy + Delta-G solvation = -22750.294426 eV Core-core repulsion = 19407.956702 eV Total energy + Delta-G solvation = -3342.337724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36361 -40.90832 -37.46928 -36.94657 -35.03990 -34.74250 -32.11891 -32.08793 -30.89142 -28.47141 -27.62978 -26.12033 -24.38968 -24.27184 -22.49684 -21.98225 -20.13632 -19.03286 -18.45916 -17.72699 -17.32530 -17.20594 -16.53016 -16.27406 -16.20488 -15.93129 -15.66519 -15.09573 -14.77023 -14.74956 -14.60141 -14.47454 -14.25734 -13.84899 -13.58800 -13.45648 -13.34759 -13.23888 -12.85936 -12.70108 -12.61500 -12.09429 -11.91587 -11.85387 -11.66577 -11.40145 -10.78091 -10.76653 -10.61123 -10.44708 -10.08576 -9.72432 -9.60793 -8.29498 -6.35031 0.20526 0.25161 1.38421 1.41138 1.51783 1.57640 1.96045 2.36594 2.86234 3.06276 3.48055 3.59287 3.71189 3.71552 3.78051 4.06449 4.12686 4.14024 4.17308 4.22943 4.24507 4.31551 4.48297 4.56587 4.66168 4.71696 4.72176 4.77315 4.91056 4.91820 4.98703 5.01054 5.09636 5.38332 5.41916 5.45517 5.54397 5.62815 5.78814 6.03051 6.25217 6.33916 6.47278 6.73610 7.02665 7.14665 7.30012 8.87232 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.002942 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.222923 B = 9516.028171 C = 9890.661143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.613 5.613 3 C 0.127 3.873 4 C -0.092 4.092 5 C -0.041 4.041 6 C -0.165 4.165 7 C 0.090 3.910 8 N -0.517 5.517 9 C 0.089 3.911 10 C -0.179 4.179 11 C 0.521 3.479 12 O -0.570 6.570 13 C 0.080 3.920 14 H 0.118 0.882 15 N -0.832 5.832 16 C -0.118 4.118 17 C -0.005 4.005 18 C -0.533 4.533 19 H 0.027 0.973 20 C 0.003 3.997 21 N -0.953 5.953 22 Si 0.952 3.048 23 H -0.263 1.263 24 H -0.291 1.291 25 H -0.239 1.239 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.162 0.838 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.134 0.866 37 H 0.354 0.646 38 H 0.344 0.656 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.023 0.977 42 H 0.032 0.968 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.677 19.037 11.207 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.346 5.346 3 C 0.004 3.996 4 C -0.130 4.130 5 C -0.050 4.050 6 C -0.185 4.185 7 C -0.067 4.067 8 N -0.226 5.226 9 C -0.067 4.067 10 C -0.199 4.199 11 C 0.309 3.691 12 O -0.449 6.449 13 C -0.036 4.036 14 H 0.136 0.864 15 N -0.364 5.364 16 C -0.158 4.158 17 C -0.043 4.043 18 C -0.571 4.571 19 H 0.045 0.955 20 C -0.194 4.194 21 N -0.594 5.594 22 Si 0.775 3.225 23 H -0.188 1.188 24 H -0.218 1.218 25 H -0.162 1.162 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.180 0.820 34 H 0.197 0.803 35 H 0.188 0.812 36 H 0.152 0.848 37 H 0.169 0.831 38 H 0.157 0.843 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.050 0.950 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.742 20.154 11.797 24.048 hybrid contribution -0.823 -2.075 -1.272 2.570 sum 4.919 18.079 10.525 21.490 Atomic orbital electron populations 1.22237 0.77168 1.04974 1.03699 1.47900 1.08393 1.05150 1.73130 1.21413 0.97778 0.84771 0.95648 1.20928 1.00780 0.93062 0.98231 1.20306 0.93906 0.95579 0.95213 1.22340 1.02833 0.91991 1.01313 1.23248 0.89524 0.99520 0.94381 1.67709 1.10509 1.31208 1.13218 1.23045 1.01396 0.87342 0.94884 1.22262 0.95192 1.00199 1.02220 1.20844 0.87527 0.86141 0.74539 1.90616 1.15528 1.87844 1.50897 1.21479 0.95817 0.89712 0.96551 0.86398 1.58764 1.10940 1.09377 1.57271 1.22054 0.99280 0.99571 0.94898 1.19496 0.95498 0.94221 0.95064 1.21420 1.30574 1.10996 0.94090 0.95495 1.26067 0.95604 0.99187 0.98535 1.70079 1.37106 1.29384 1.22801 0.85628 0.80047 0.77206 0.79581 1.18783 1.21754 1.16203 0.90345 0.88384 0.90820 0.87388 0.91722 0.92518 0.88772 0.82032 0.80286 0.81218 0.84815 0.83073 0.84285 0.91232 0.94248 0.95873 0.94974 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 9.85 127.77 1.26 2.24 16 2 N -0.61 -13.67 2.87 -846.74 -2.43 -16.10 16 3 C 0.13 2.42 5.39 86.38 0.47 2.88 16 4 C -0.09 -1.73 5.72 29.85 0.17 -1.56 16 5 C -0.04 -0.75 5.17 -19.67 -0.10 -0.85 16 6 C -0.17 -2.39 9.82 22.36 0.22 -2.17 16 7 C 0.09 1.42 11.18 84.68 0.95 2.37 16 8 N -0.52 -10.62 10.36 -195.85 -2.03 -12.65 16 9 C 0.09 1.70 11.18 84.68 0.95 2.64 16 10 C -0.18 -3.49 9.82 22.36 0.22 -3.27 16 11 C 0.52 15.67 6.93 87.66 0.61 16.28 16 12 O -0.57 -20.96 15.83 -3.01 -0.05 -21.01 16 13 C 0.08 2.35 2.37 44.17 0.10 2.45 16 14 H 0.12 3.01 7.21 -2.39 -0.02 2.99 16 15 N -0.83 -25.28 8.94 -171.80 -1.54 -26.81 16 16 C -0.12 -4.19 4.45 30.59 0.14 -4.06 16 17 C -0.01 -0.22 3.81 29.85 0.11 -0.11 16 18 C -0.53 -29.18 9.66 25.60 0.25 -28.94 16 19 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 20 C 0.00 0.16 5.47 84.65 0.46 0.62 16 21 N -0.95 -58.46 13.96 21.45 0.30 -58.16 16 22 Si 0.95 41.68 27.47 68.60 1.88 43.56 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 24 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.24 -9.37 6.54 99.48 0.65 -8.72 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.10 1.09 8.07 -2.38 -0.02 1.07 16 28 H 0.07 1.44 4.83 -2.39 -0.01 1.42 16 29 H 0.11 1.41 8.07 -2.39 -0.02 1.39 16 30 H 0.06 1.53 7.42 -2.39 -0.02 1.51 16 31 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 32 H 0.09 1.51 8.10 -2.39 -0.02 1.49 16 33 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 35 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 36 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 37 H 0.35 10.14 7.55 -89.69 -0.68 9.46 16 38 H 0.34 11.02 8.58 -89.69 -0.77 10.25 16 39 H 0.07 2.38 6.43 -2.39 -0.02 2.36 16 40 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.02 0.94 5.92 -2.39 -0.01 0.93 16 42 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 43 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -73.07 353.67 1.46 -71.62 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -0.48 Total: 31.00 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 5.80 Total: -11.45 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -5.70 Total: -113.72 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.05 Total: -21.01 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.56 kcal Total: -73.07 1.46 -71.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424150998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.612 kcal (2) G-P(sol) polarization free energy of solvation -73.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds