Wall clock time and date at job start Tue Mar 31 2020 07:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.52999 * 109.47070 * 90.00054 * 3 2 1 5 5 C 1.50702 * 109.47511 * 180.02562 * 4 3 2 6 6 C 1.38648 * 120.78625 * 269.72525 * 5 4 3 7 7 C 1.38212 * 119.15693 * 179.79790 * 6 5 4 8 8 N 1.31864 * 120.76262 * 0.48045 * 7 6 5 9 9 C 1.31873 * 121.72913 * 359.74863 * 8 7 6 10 10 C 1.38208 * 120.76451 * 0.02562 * 9 8 7 11 11 C 1.34777 * 119.99873 * 180.28195 * 2 1 3 12 12 O 1.21283 * 120.00222 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99772 * 359.97438 * 11 2 1 14 14 H 1.08993 * 109.47465 * 40.00483 * 13 11 2 15 15 N 1.46906 * 109.46846 * 160.00348 * 13 11 2 16 16 C 1.53001 * 109.47361 * 280.00085 * 13 11 2 17 17 C 1.53001 * 109.47423 * 175.00171 * 16 13 11 18 18 C 1.50695 * 109.47229 * 179.97438 * 17 16 13 19 19 H 1.08001 * 119.99961 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99929 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99992 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00266 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46963 * 89.99873 * 22 20 18 24 24 H 1.48499 * 109.47535 * 209.99823 * 22 20 18 25 25 H 1.48497 * 109.47107 * 330.00187 * 22 20 18 26 26 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 27 27 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 28 28 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 29 29 H 1.08993 * 109.47575 * 210.00600 * 3 2 1 30 30 H 1.09001 * 109.46870 * 330.00556 * 3 2 1 31 31 H 1.09002 * 109.47116 * 300.00653 * 4 3 2 32 32 H 1.09001 * 109.47317 * 59.99875 * 4 3 2 33 33 H 1.07993 * 120.42082 * 359.97438 * 6 5 4 34 34 H 1.08000 * 119.61641 * 180.20771 * 7 6 5 35 35 H 1.07999 * 119.61542 * 180.02562 * 9 8 7 36 36 H 1.07995 * 120.41635 * 179.97438 * 10 9 8 37 37 H 1.00893 * 111.00062 * 60.00161 * 15 13 11 38 38 H 1.00905 * 110.99842 * 183.95218 * 15 13 11 39 39 H 1.09002 * 109.47001 * 295.00590 * 16 13 11 40 40 H 1.08998 * 109.47106 * 55.00197 * 16 13 11 41 41 H 1.08994 * 109.47211 * 300.00483 * 17 16 13 42 42 H 1.09003 * 109.46546 * 60.00100 * 17 16 13 43 43 H 0.97004 * 120.00192 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2056 3.0157 1.4426 6 6 4.5920 3.0353 1.4482 7 6 5.2483 4.2516 1.4439 8 7 4.5713 5.3833 1.4440 9 6 3.2528 5.4026 1.4434 10 6 2.5284 4.2256 1.4430 11 6 2.1389 -1.1672 -0.0057 12 8 3.3517 -1.1673 -0.0062 13 6 1.3853 -2.4722 -0.0116 14 1 0.5217 -2.3902 -0.6714 15 7 2.2675 -3.5449 -0.4906 16 6 0.9139 -2.7953 1.4077 17 6 0.0439 -4.0537 1.3821 18 6 -0.4199 -4.3723 2.7800 19 1 -0.1241 -3.7402 3.6043 20 6 -1.2218 -5.4706 3.0068 21 7 -1.6270 -5.7484 4.2267 22 14 -1.7340 -6.5635 1.5811 23 1 -0.7310 -7.6437 1.4003 24 1 -3.0613 -7.1637 1.8693 25 1 -1.8165 -5.7520 0.3402 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 0.8925 -0.5094 28 1 -0.3633 -0.8875 -0.5181 29 1 3.1499 1.1384 -0.5139 30 1 1.6085 2.0284 -0.5138 31 1 1.5002 1.8406 1.9564 32 1 3.0417 0.9507 1.9564 33 1 5.1519 2.1118 1.4529 34 1 6.3280 4.2755 1.4447 35 1 2.7329 6.3493 1.4432 36 1 1.4487 4.2480 1.4429 37 1 3.0762 -3.6409 0.1049 38 1 1.7674 -4.4181 -0.5650 39 1 1.7794 -2.9649 2.0482 40 1 0.3324 -1.9595 1.7965 41 1 -0.8215 -3.8841 0.7415 42 1 0.6256 -4.8896 0.9933 43 1 -2.1909 -6.5214 4.3864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424151004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:18 Heat of formation + Delta-G solvation = -10.854475 kcal Electronic energy + Delta-G solvation = -22744.022983 eV Core-core repulsion = 19402.689088 eV Total energy + Delta-G solvation = -3341.333895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49875 -39.91117 -36.34612 -35.60372 -34.14818 -32.84127 -31.43972 -30.36276 -30.04804 -27.06823 -26.70913 -24.81335 -23.69680 -23.03559 -21.65994 -20.40426 -18.95927 -17.56480 -17.01214 -16.75655 -16.56429 -16.16385 -15.80383 -15.17713 -14.80326 -14.40485 -14.24674 -14.04577 -14.00877 -13.65191 -13.45683 -13.22708 -12.86274 -12.70110 -12.57929 -12.51927 -12.35800 -11.99258 -11.83169 -11.35004 -11.09155 -11.00291 -10.36671 -10.14687 -9.90957 -9.89837 -9.73960 -9.41429 -9.40278 -9.35492 -8.71630 -8.65573 -8.35972 -6.15235 -4.15037 0.88677 0.98200 2.77770 2.92968 3.22090 3.30558 3.31214 3.57209 4.21781 4.34211 4.41836 4.45528 4.61075 4.83573 4.89825 4.95451 4.97386 5.00427 5.03413 5.17624 5.24836 5.29923 5.38486 5.50184 5.51835 5.55925 5.61405 5.73229 5.74456 5.88303 6.10057 6.14157 6.27568 6.43797 6.46655 6.60990 7.04159 7.16983 7.21563 7.45270 7.62856 7.72250 7.73643 8.28929 8.40790 8.88545 9.45942 10.97953 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025914 B = 0.002938 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.251523 B = 9527.460951 C = 9899.558620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.620 5.620 3 C 0.126 3.874 4 C -0.101 4.101 5 C -0.032 4.032 6 C -0.166 4.166 7 C 0.099 3.901 8 N -0.492 5.492 9 C 0.097 3.903 10 C -0.171 4.171 11 C 0.527 3.473 12 O -0.534 6.534 13 C 0.070 3.930 14 H 0.098 0.902 15 N -0.831 5.831 16 C -0.129 4.129 17 C -0.010 4.010 18 C -0.524 4.524 19 H 0.071 0.929 20 C 0.067 3.933 21 N -0.900 5.900 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.265 1.265 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.134 0.866 37 H 0.348 0.652 38 H 0.350 0.650 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.018 0.982 42 H 0.011 0.989 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.961 18.143 -8.959 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.354 5.354 3 C 0.003 3.997 4 C -0.140 4.140 5 C -0.040 4.040 6 C -0.186 4.186 7 C -0.058 4.058 8 N -0.201 5.201 9 C -0.060 4.060 10 C -0.191 4.191 11 C 0.316 3.684 12 O -0.410 6.410 13 C -0.045 4.045 14 H 0.116 0.884 15 N -0.363 5.363 16 C -0.169 4.169 17 C -0.047 4.047 18 C -0.562 4.562 19 H 0.089 0.911 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.190 1.190 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.155 0.845 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.031 19.228 -9.529 22.583 hybrid contribution -1.207 -1.897 0.461 2.295 sum 5.824 17.331 -9.068 20.409 Atomic orbital electron populations 1.21951 0.79010 1.03294 1.02680 1.47839 1.07213 1.05612 1.74784 1.21326 0.98218 0.84847 0.95335 1.21062 1.00655 0.93553 0.98717 1.20253 0.93941 0.95261 0.94585 1.22176 0.94687 1.00110 1.01614 1.22777 1.00458 0.87579 0.94980 1.67671 1.09310 1.30793 1.12353 1.22752 0.89912 0.98113 0.95221 1.22085 1.01497 0.92918 1.02583 1.20830 0.87941 0.85211 0.74463 1.90632 1.14072 1.87262 1.49001 1.21585 0.95159 0.89481 0.98272 0.88401 1.58755 1.10975 1.09223 1.57379 1.22194 1.00647 1.00876 0.93156 1.19565 0.94480 0.92264 0.98394 1.21050 1.30956 1.11768 0.92411 0.91094 1.25042 0.95496 0.97341 0.95551 1.69910 1.35778 1.28121 1.20079 0.86772 0.78174 0.81041 0.83236 1.20215 1.21314 1.18967 0.91837 0.91215 0.90303 0.89743 0.90541 0.90087 0.89772 0.84515 0.82755 0.82843 0.84761 0.83869 0.83502 0.92142 0.91791 0.96384 0.97081 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 9.61 59.85 0.58 1.29 16 2 N -0.62 -7.50 2.87 -181.57 -0.52 -8.02 16 3 C 0.13 1.31 5.44 -4.04 -0.02 1.29 16 4 C -0.10 -1.01 5.72 -27.88 -0.16 -1.17 16 5 C -0.03 -0.30 5.17 -104.32 -0.54 -0.84 16 6 C -0.17 -1.62 9.82 -39.44 -0.39 -2.00 16 7 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 8 N -0.49 -5.30 10.36 -13.25 -0.14 -5.44 16 9 C 0.10 0.86 11.18 -17.55 -0.20 0.67 16 10 C -0.17 -1.44 9.82 -39.44 -0.39 -1.83 16 11 C 0.53 8.17 6.93 -10.99 -0.08 8.10 16 12 O -0.53 -9.77 15.83 5.55 0.09 -9.68 16 13 C 0.07 1.09 2.47 -68.86 -0.17 0.92 16 14 H 0.10 1.40 6.31 -51.93 -0.33 1.07 16 15 N -0.83 -13.16 8.94 -5.65 -0.05 -13.21 16 16 C -0.13 -2.34 4.71 -26.73 -0.13 -2.47 16 17 C -0.01 -0.21 3.81 -27.88 -0.11 -0.31 16 18 C -0.52 -14.22 9.66 -34.44 -0.33 -14.55 16 19 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 20 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 22 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 26 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 27 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 28 H 0.08 0.77 5.94 -51.93 -0.31 0.47 16 29 H 0.08 1.02 7.42 -51.93 -0.39 0.63 16 30 H 0.08 0.62 7.89 -51.93 -0.41 0.21 16 31 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.35 5.62 8.58 -39.30 -0.34 5.29 16 38 H 0.35 5.33 7.55 -39.29 -0.30 5.04 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.13 6.94 -51.93 -0.36 0.77 16 41 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 42 H 0.01 0.24 6.30 -51.93 -0.33 -0.09 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -33.00 353.70 -7.88 -40.88 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.47 Total: 8.70 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.22 Total: -8.37 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.06 Total: -52.91 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.00 -7.88 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424151004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.025 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds