Wall clock time and date at job start Tue Mar 31 2020 07:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.52999 * 109.47070 * 90.00054 * 3 2 1 5 5 C 1.50702 * 109.47511 * 180.02562 * 4 3 2 6 6 C 1.38648 * 120.78625 * 269.72525 * 5 4 3 7 7 C 1.38212 * 119.15693 * 179.79790 * 6 5 4 8 8 N 1.31864 * 120.76262 * 0.48045 * 7 6 5 9 9 C 1.31873 * 121.72913 * 359.74863 * 8 7 6 10 10 C 1.38208 * 120.76451 * 0.02562 * 9 8 7 11 11 C 1.34777 * 119.99873 * 180.28195 * 2 1 3 12 12 O 1.21283 * 120.00222 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99772 * 359.97438 * 11 2 1 14 14 H 1.08993 * 109.47465 * 40.00483 * 13 11 2 15 15 N 1.46906 * 109.46846 * 160.00348 * 13 11 2 16 16 C 1.53001 * 109.47361 * 280.00085 * 13 11 2 17 17 C 1.53001 * 109.47423 * 175.00171 * 16 13 11 18 18 C 1.50695 * 109.47229 * 179.97438 * 17 16 13 19 19 H 1.08001 * 119.99961 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99929 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99992 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00266 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46963 * 89.99873 * 22 20 18 24 24 H 1.48499 * 109.47535 * 209.99823 * 22 20 18 25 25 H 1.48497 * 109.47107 * 330.00187 * 22 20 18 26 26 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 27 27 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 28 28 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 29 29 H 1.08993 * 109.47575 * 210.00600 * 3 2 1 30 30 H 1.09001 * 109.46870 * 330.00556 * 3 2 1 31 31 H 1.09002 * 109.47116 * 300.00653 * 4 3 2 32 32 H 1.09001 * 109.47317 * 59.99875 * 4 3 2 33 33 H 1.07993 * 120.42082 * 359.97438 * 6 5 4 34 34 H 1.08000 * 119.61641 * 180.20771 * 7 6 5 35 35 H 1.07999 * 119.61542 * 180.02562 * 9 8 7 36 36 H 1.07995 * 120.41635 * 179.97438 * 10 9 8 37 37 H 1.00893 * 111.00062 * 60.00161 * 15 13 11 38 38 H 1.00905 * 110.99842 * 183.95218 * 15 13 11 39 39 H 1.09002 * 109.47001 * 295.00590 * 16 13 11 40 40 H 1.08998 * 109.47106 * 55.00197 * 16 13 11 41 41 H 1.08994 * 109.47211 * 300.00483 * 17 16 13 42 42 H 1.09003 * 109.46546 * 60.00100 * 17 16 13 43 43 H 0.97004 * 120.00192 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2056 3.0157 1.4426 6 6 4.5920 3.0353 1.4482 7 6 5.2483 4.2516 1.4439 8 7 4.5713 5.3833 1.4440 9 6 3.2528 5.4026 1.4434 10 6 2.5284 4.2256 1.4430 11 6 2.1389 -1.1672 -0.0057 12 8 3.3517 -1.1673 -0.0062 13 6 1.3853 -2.4722 -0.0116 14 1 0.5217 -2.3902 -0.6714 15 7 2.2675 -3.5449 -0.4906 16 6 0.9139 -2.7953 1.4077 17 6 0.0439 -4.0537 1.3821 18 6 -0.4199 -4.3723 2.7800 19 1 -0.1241 -3.7402 3.6043 20 6 -1.2218 -5.4706 3.0068 21 7 -1.6270 -5.7484 4.2267 22 14 -1.7340 -6.5635 1.5811 23 1 -0.7310 -7.6437 1.4003 24 1 -3.0613 -7.1637 1.8693 25 1 -1.8165 -5.7520 0.3402 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 0.8925 -0.5094 28 1 -0.3633 -0.8875 -0.5181 29 1 3.1499 1.1384 -0.5139 30 1 1.6085 2.0284 -0.5138 31 1 1.5002 1.8406 1.9564 32 1 3.0417 0.9507 1.9564 33 1 5.1519 2.1118 1.4529 34 1 6.3280 4.2755 1.4447 35 1 2.7329 6.3493 1.4432 36 1 1.4487 4.2480 1.4429 37 1 3.0762 -3.6409 0.1049 38 1 1.7674 -4.4181 -0.5650 39 1 1.7794 -2.9649 2.0482 40 1 0.3324 -1.9595 1.7965 41 1 -0.8215 -3.8841 0.7415 42 1 0.6256 -4.8896 0.9933 43 1 -2.1909 -6.5214 4.3864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424151004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:17 Heat of formation + Delta-G solvation = -33.914847 kcal Electronic energy + Delta-G solvation = -22745.022955 eV Core-core repulsion = 19402.689088 eV Total energy + Delta-G solvation = -3342.333868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.35812 -40.90541 -37.46797 -36.92731 -35.04876 -34.74342 -32.11880 -32.08437 -30.88961 -28.47113 -27.60746 -26.13909 -24.39128 -24.28275 -22.50384 -22.01071 -20.11216 -19.02443 -18.48733 -17.72572 -17.32386 -17.18750 -16.52272 -16.27630 -16.20672 -15.92212 -15.61450 -15.11683 -14.76968 -14.74819 -14.60315 -14.48904 -14.23775 -13.84479 -13.73872 -13.44660 -13.31254 -13.20870 -12.94292 -12.67562 -12.55366 -12.05139 -11.90076 -11.89040 -11.65514 -11.40460 -10.78519 -10.75795 -10.61860 -10.44686 -10.08568 -9.73111 -9.61487 -8.29491 -6.35023 0.20441 0.25153 1.39264 1.40169 1.51617 1.57963 1.95772 2.36558 2.86213 3.06299 3.48258 3.59257 3.70605 3.71666 3.78070 4.01928 4.11642 4.12720 4.16337 4.23571 4.24424 4.35489 4.49280 4.57435 4.65394 4.69975 4.74622 4.78714 4.91694 4.92787 4.99136 5.01511 5.09383 5.36775 5.41905 5.46682 5.53720 5.62852 5.78779 6.02807 6.25277 6.33582 6.47745 6.73582 7.02653 7.14628 7.29940 8.87277 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025914 B = 0.002938 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.251523 B = 9527.460951 C = 9899.558620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.613 5.613 3 C 0.126 3.874 4 C -0.091 4.091 5 C -0.041 4.041 6 C -0.179 4.179 7 C 0.089 3.911 8 N -0.517 5.517 9 C 0.090 3.910 10 C -0.165 4.165 11 C 0.521 3.479 12 O -0.570 6.570 13 C 0.078 3.922 14 H 0.120 0.880 15 N -0.832 5.832 16 C -0.116 4.116 17 C -0.005 4.005 18 C -0.533 4.533 19 H 0.026 0.974 20 C 0.002 3.998 21 N -0.953 5.953 22 Si 0.953 3.047 23 H -0.270 1.270 24 H -0.288 1.288 25 H -0.235 1.235 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.134 0.866 34 H 0.171 0.829 35 H 0.180 0.820 36 H 0.162 0.838 37 H 0.344 0.656 38 H 0.354 0.646 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.034 0.966 42 H 0.021 0.979 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.618 19.150 -11.405 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.345 5.345 3 C 0.004 3.996 4 C -0.130 4.130 5 C -0.050 4.050 6 C -0.199 4.199 7 C -0.067 4.067 8 N -0.226 5.226 9 C -0.067 4.067 10 C -0.185 4.185 11 C 0.309 3.691 12 O -0.449 6.449 13 C -0.037 4.037 14 H 0.138 0.862 15 N -0.364 5.364 16 C -0.156 4.156 17 C -0.042 4.042 18 C -0.571 4.571 19 H 0.044 0.956 20 C -0.194 4.194 21 N -0.594 5.594 22 Si 0.776 3.224 23 H -0.195 1.195 24 H -0.214 1.214 25 H -0.157 1.157 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.188 0.812 35 H 0.197 0.803 36 H 0.180 0.820 37 H 0.157 0.843 38 H 0.170 0.830 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.676 20.275 -11.992 24.230 hybrid contribution -0.782 -2.112 1.323 2.612 sum 4.894 18.163 -10.669 21.626 Atomic orbital electron populations 1.22195 0.77116 1.05186 1.03161 1.47901 1.08414 1.05179 1.73010 1.21441 0.97836 0.84706 0.95637 1.20921 1.00728 0.93048 0.98286 1.20305 0.93905 0.95578 0.95217 1.22263 0.95189 1.00196 1.02230 1.23047 1.01392 0.87337 0.94874 1.67705 1.10475 1.31240 1.13217 1.23249 0.89529 0.99507 0.94376 1.22338 1.02823 0.91993 1.01320 1.20830 0.87536 0.86138 0.74569 1.90619 1.15512 1.87834 1.50949 1.21518 0.95844 0.89737 0.96575 0.86206 1.58777 1.10919 1.09559 1.57114 1.21990 0.99197 0.99522 0.94893 1.19490 0.95537 0.94091 0.95101 1.21421 1.30609 1.11004 0.94041 0.95557 1.26072 0.95591 0.99182 0.98588 1.70082 1.37201 1.29193 1.22916 0.85622 0.77512 0.79007 0.80277 1.19526 1.21445 1.15742 0.91990 0.87735 0.90143 0.91716 0.87292 0.88878 0.92568 0.84820 0.81210 0.80277 0.82050 0.84295 0.83047 0.94373 0.91476 0.94799 0.96069 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 9.61 127.77 1.23 2.27 16 2 N -0.61 -13.62 2.87 -846.76 -2.43 -16.05 16 3 C 0.13 2.41 5.44 86.38 0.47 2.88 16 4 C -0.09 -1.74 5.72 29.85 0.17 -1.57 16 5 C -0.04 -0.75 5.17 -19.67 -0.10 -0.85 16 6 C -0.18 -3.50 9.82 22.36 0.22 -3.28 16 7 C 0.09 1.70 11.18 84.68 0.95 2.65 16 8 N -0.52 -10.62 10.36 -195.84 -2.03 -12.65 16 9 C 0.09 1.43 11.18 84.68 0.95 2.37 16 10 C -0.17 -2.40 9.82 22.36 0.22 -2.18 16 11 C 0.52 15.64 6.93 87.66 0.61 16.25 16 12 O -0.57 -20.96 15.83 -3.04 -0.05 -21.01 16 13 C 0.08 2.31 2.47 44.17 0.11 2.41 16 14 H 0.12 3.03 6.31 -2.39 -0.02 3.01 16 15 N -0.83 -25.12 8.94 -171.80 -1.54 -26.66 16 16 C -0.12 -4.14 4.71 30.59 0.14 -4.00 16 17 C 0.00 -0.20 3.81 29.85 0.11 -0.08 16 18 C -0.53 -29.28 9.66 25.60 0.25 -29.03 16 19 H 0.03 1.62 7.99 -2.91 -0.02 1.60 16 20 C 0.00 0.13 5.47 84.65 0.46 0.59 16 21 N -0.95 -58.58 13.96 21.45 0.30 -58.28 16 22 Si 0.95 41.73 27.47 68.60 1.88 43.61 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.23 -9.05 6.54 99.48 0.65 -8.40 16 26 H 0.06 1.05 7.65 -2.39 -0.02 1.03 16 27 H 0.10 0.98 7.89 -2.39 -0.02 0.96 16 28 H 0.08 1.29 5.94 -2.39 -0.01 1.28 16 29 H 0.06 1.53 7.42 -2.39 -0.02 1.51 16 30 H 0.11 1.39 7.89 -2.39 -0.02 1.37 16 31 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 32 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 33 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 36 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 37 H 0.34 10.98 8.58 -89.70 -0.77 10.21 16 38 H 0.35 10.00 7.55 -89.69 -0.68 9.32 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 2.32 6.94 -2.39 -0.02 2.30 16 41 H 0.03 1.33 7.20 -2.39 -0.02 1.32 16 42 H 0.02 0.85 6.30 -2.39 -0.02 0.84 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -73.49 353.70 1.44 -72.04 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.48 Total: 30.54 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 5.78 Total: -11.55 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -5.70 Total: -113.64 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.05 Total: -21.01 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.88 Total: 43.61 kcal Total: -73.49 1.44 -72.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424151004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.130 kcal (2) G-P(sol) polarization free energy of solvation -73.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds