Wall clock time and date at job start Tue Mar 31 2020 07:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 110.99842 * 2 1 4 4 C 1.50703 * 109.47140 * 179.97438 * 3 2 1 5 5 C 1.38278 * 119.92966 * 269.72475 * 4 3 2 6 6 C 1.38112 * 120.06964 * 179.76322 * 5 4 3 7 7 C 1.38871 * 119.92880 * 0.51477 * 6 5 4 8 8 N 1.39929 * 120.07338 * 179.72230 * 7 6 5 9 9 C 1.34767 * 119.99968 * 213.30978 * 8 7 6 10 10 O 1.21293 * 120.00315 * 5.27113 * 9 8 7 11 11 C 1.50709 * 120.00124 * 185.27394 * 9 8 7 12 12 H 1.09000 * 109.46898 * 39.99738 * 11 9 8 13 13 N 1.46896 * 109.47224 * 160.00053 * 11 9 8 14 14 C 1.53005 * 109.46644 * 280.00106 * 11 9 8 15 15 C 1.52996 * 109.46678 * 174.99935 * 14 11 9 16 16 C 1.50708 * 109.47052 * 179.97438 * 15 14 11 17 17 H 1.07997 * 119.99713 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99969 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00213 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99737 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46901 * 90.00011 * 20 18 16 22 22 H 1.48503 * 109.47168 * 209.99605 * 20 18 16 23 23 H 1.48494 * 109.47250 * 329.99900 * 20 18 16 24 24 C 1.38872 * 119.85878 * 359.74043 * 7 6 5 25 25 C 1.38108 * 119.93017 * 359.97438 * 24 7 6 26 26 H 1.08998 * 109.47164 * 60.00524 * 1 2 3 27 27 H 1.09001 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47095 * 299.99527 * 1 2 3 29 29 H 1.00902 * 110.99722 * 123.95766 * 2 1 3 30 30 H 1.09001 * 109.46977 * 300.00096 * 3 2 1 31 31 H 1.09001 * 109.47007 * 60.00029 * 3 2 1 32 32 H 1.07999 * 119.96497 * 0.02562 * 5 4 3 33 33 H 1.07998 * 120.03821 * 180.25626 * 6 5 4 34 34 H 0.96996 * 119.99690 * 33.30440 * 8 7 6 35 35 H 1.00903 * 111.00164 * 296.04113 * 13 11 9 36 36 H 1.00897 * 111.00201 * 60.00089 * 13 11 9 37 37 H 1.09008 * 109.46889 * 294.99513 * 14 11 9 38 38 H 1.08997 * 109.47320 * 54.99425 * 14 11 9 39 39 H 1.08998 * 109.47231 * 299.99489 * 15 14 11 40 40 H 1.09002 * 109.47502 * 60.00152 * 15 14 11 41 41 H 0.97003 * 120.00216 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.03821 * 179.97438 * 24 7 6 43 43 H 1.07999 * 119.96703 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1912 1.3188 1.1993 6 6 5.5717 1.2771 1.2033 7 6 6.2678 1.2584 0.0018 8 7 7.6666 1.2220 0.0023 9 6 8.3572 1.8447 -0.9732 10 8 7.7722 2.5161 -1.7967 11 6 9.8565 1.7069 -1.0408 12 1 10.1379 0.6804 -0.8059 13 7 10.3186 2.0440 -2.3938 14 6 10.5019 2.6569 -0.0298 15 6 12.0146 2.4285 -0.0094 16 6 12.6506 3.3646 0.9859 17 1 12.0371 4.0537 1.5473 18 6 14.0155 3.3419 1.1789 19 7 14.7626 2.5032 0.4948 20 14 14.8038 4.5027 2.4121 21 1 14.8545 3.8492 3.7446 22 1 16.1825 4.8328 1.9699 23 1 14.0012 5.7488 2.5021 24 6 5.5727 1.2763 -1.2003 25 6 4.1921 1.3121 -1.1975 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8306 -0.5262 0.7814 30 1 1.6459 1.8947 -0.8900 31 1 1.6459 1.8947 0.8900 32 1 3.6494 1.3374 2.1333 33 1 6.1094 1.2632 2.1398 34 1 8.1391 0.7486 0.7047 35 1 9.9572 1.3908 -3.0726 36 1 10.0697 2.9915 -2.6354 37 1 10.2939 3.6879 -0.3160 38 1 10.0921 2.4653 0.9618 39 1 12.2226 1.3975 0.2767 40 1 12.4245 2.6202 -1.0011 41 1 15.7229 2.4869 0.6309 42 1 6.1111 1.2623 -2.1364 43 1 3.6509 1.3264 -2.1320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424160408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:23 Heat of formation + Delta-G solvation = -45.255055 kcal Electronic energy + Delta-G solvation = -22161.945691 eV Core-core repulsion = 18819.120075 eV Total energy + Delta-G solvation = -3342.825616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74503 -39.97252 -37.32883 -36.74014 -35.55243 -34.82642 -31.96976 -31.90099 -31.52301 -28.45213 -27.19687 -25.54099 -24.32667 -23.93602 -22.65145 -21.89906 -21.13529 -19.00240 -18.49980 -18.12155 -17.38003 -16.98875 -16.54967 -16.48737 -15.97182 -15.76299 -15.50299 -15.34336 -15.10774 -14.85178 -14.35530 -14.27014 -14.11403 -13.88397 -13.65514 -13.43053 -13.01896 -12.79767 -12.66086 -12.55989 -12.34632 -12.29215 -12.06910 -11.76656 -11.62703 -11.33982 -11.21512 -11.00067 -10.48705 -9.90492 -9.68084 -9.44248 -9.03686 -8.13606 -6.23664 0.20065 0.44761 1.41451 1.43205 1.44477 1.54034 2.01249 2.44737 2.76134 3.19513 3.48518 3.50075 3.71488 3.87159 3.92665 4.05703 4.07514 4.27021 4.29562 4.45068 4.53170 4.55554 4.63444 4.73821 4.75881 4.76964 4.91714 5.06045 5.07714 5.23919 5.26057 5.34307 5.50354 5.57656 5.64654 5.84623 5.97186 5.98827 6.04226 6.08387 6.30407 6.33987 6.43090 6.49453 6.95045 6.99942 7.44392 8.97426 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031993 B = 0.002503 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.975466 B =11184.423736 C =11774.477677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.703 5.703 3 C 0.105 3.895 4 C -0.106 4.106 5 C -0.091 4.091 6 C -0.147 4.147 7 C 0.131 3.869 8 N -0.662 5.662 9 C 0.490 3.510 10 O -0.559 6.559 11 C 0.089 3.911 12 H 0.116 0.884 13 N -0.817 5.817 14 C -0.084 4.084 15 C 0.039 3.961 16 C -0.543 4.543 17 H 0.056 0.944 18 C 0.001 3.999 19 N -0.929 5.929 20 Si 0.959 3.041 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.267 1.267 24 C -0.143 4.143 25 C -0.087 4.087 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.347 0.653 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.425 0.575 35 H 0.348 0.652 36 H 0.346 0.654 37 H 0.043 0.957 38 H 0.070 0.930 39 H -0.004 1.004 40 H 0.006 0.994 41 H 0.262 0.738 42 H 0.112 0.888 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.098 -6.221 1.797 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.335 5.335 3 C -0.023 4.023 4 C -0.107 4.107 5 C -0.110 4.110 6 C -0.167 4.167 7 C 0.037 3.963 8 N -0.308 5.308 9 C 0.277 3.723 10 O -0.436 6.436 11 C -0.027 4.027 12 H 0.134 0.866 13 N -0.346 5.346 14 C -0.122 4.122 15 C 0.001 3.999 16 C -0.581 4.581 17 H 0.074 0.926 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.784 3.216 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.192 1.192 24 C -0.163 4.163 25 C -0.106 4.106 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.165 0.835 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.264 0.736 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.015 0.985 40 H 0.025 0.975 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.488 -6.003 0.747 27.170 hybrid contribution -0.030 0.717 1.231 1.425 sum -26.518 -5.286 1.978 27.112 Atomic orbital electron populations 1.22242 0.86590 1.02634 1.00782 1.60423 1.08664 1.13588 1.50785 1.20828 0.89314 0.90313 1.01875 1.19915 0.95936 1.01927 0.92885 1.21117 0.93125 0.98332 0.98396 1.21156 0.95114 1.03893 0.96579 1.18083 0.82895 1.00578 0.94781 1.43684 1.04676 1.53295 1.29169 1.22689 0.92217 0.77282 0.80152 1.90660 1.71790 1.39978 1.41200 1.21672 0.85742 1.02751 0.92490 0.86626 1.58976 1.64838 1.08777 1.01994 1.21425 0.97316 0.96999 0.96448 1.18834 0.90306 0.94978 0.95735 1.21728 0.92825 1.20625 1.22947 0.92616 1.25899 0.98228 0.97415 0.98152 1.70101 1.05623 1.38497 1.42686 0.85539 0.77551 0.79304 0.79172 1.19621 1.21026 1.19194 1.21106 0.94967 1.03074 0.97185 1.21002 0.92689 0.98132 0.98770 0.91736 0.90584 0.95185 0.83491 0.90283 0.93073 0.83236 0.83626 0.73608 0.83883 0.83985 0.93857 0.91158 0.98543 0.97528 0.92952 0.86966 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.70 127.69 1.37 1.62 16 2 N -0.70 -9.31 6.84 -541.24 -3.70 -13.01 16 3 C 0.11 1.45 5.81 85.56 0.50 1.95 16 4 C -0.11 -1.91 5.39 -19.84 -0.11 -2.01 16 5 C -0.09 -1.51 9.69 22.25 0.22 -1.29 16 6 C -0.15 -2.87 9.96 22.39 0.22 -2.65 16 7 C 0.13 3.25 6.28 38.15 0.24 3.49 16 8 N -0.66 -16.32 5.34 -303.50 -1.62 -17.94 16 9 C 0.49 14.84 6.81 87.66 0.60 15.43 16 10 O -0.56 -19.95 13.94 -3.07 -0.04 -19.99 16 11 C 0.09 2.86 3.15 44.17 0.14 3.00 16 12 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 13 N -0.82 -26.90 8.44 -171.79 -1.45 -28.35 16 14 C -0.08 -3.27 4.78 30.59 0.15 -3.12 16 15 C 0.04 1.97 4.86 29.85 0.15 2.12 16 16 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 17 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 18 C 0.00 0.05 5.46 84.65 0.46 0.51 16 19 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 20 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.14 -3.80 8.66 22.39 0.19 -3.61 16 25 C -0.09 -1.92 9.69 22.25 0.22 -1.71 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.35 4.02 8.81 -89.69 -0.79 3.23 16 30 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 31 H 0.05 0.58 8.08 -2.39 -0.02 0.56 16 32 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.43 8.19 8.82 -92.71 -0.82 7.37 16 35 H 0.35 9.78 9.06 -89.69 -0.81 8.97 16 36 H 0.35 11.70 8.58 -89.70 -0.77 10.93 16 37 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.01 0.36 7.75 -2.39 -0.02 0.34 16 41 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.11 3.39 6.41 -2.91 -0.02 3.37 16 43 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -70.01 361.88 -2.08 -72.10 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -2.14 Total: 33.50 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 4.57 Total: -16.54 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -6.49 Total: -115.29 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.04 Total: -19.99 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -70.01 -2.08 -72.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424160408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.841 kcal (2) G-P(sol) polarization free energy of solvation -70.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds