Wall clock time and date at job start Tue Mar 31 2020 07:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46504 * 120.00080 * 2 1 4 4 C 1.53000 * 109.46739 * 270.00218 * 3 2 1 5 5 C 1.50707 * 109.46899 * 180.02562 * 4 3 2 6 6 C 1.38227 * 119.62059 * 125.01804 * 5 4 3 7 7 C 1.38627 * 119.15702 * 179.74122 * 6 5 4 8 8 C 1.38669 * 118.42389 * 0.47826 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.49762 * 8 7 6 10 10 N 1.31856 * 119.61137 * 304.99234 * 5 4 3 11 11 C 1.34774 * 120.00361 * 179.97438 * 2 1 3 12 12 O 1.21274 * 120.00195 * 180.02562 * 11 2 1 13 13 C 1.50707 * 119.99569 * 359.97438 * 11 2 1 14 14 H 1.08996 * 109.47502 * 320.00169 * 13 11 2 15 15 N 1.46897 * 109.46826 * 200.00082 * 13 11 2 16 16 C 1.52998 * 109.47000 * 80.00745 * 13 11 2 17 17 C 1.52999 * 109.47416 * 185.00138 * 16 13 11 18 18 C 1.50695 * 109.47217 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00021 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99831 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00323 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99908 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.46962 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46979 * 120.00126 * 22 20 18 25 25 H 1.48499 * 109.47007 * 239.99917 * 22 20 18 26 26 H 1.09007 * 109.47617 * 90.00394 * 1 2 3 27 27 H 1.09005 * 109.47529 * 209.99802 * 1 2 3 28 28 H 1.09000 * 109.47756 * 330.00532 * 1 2 3 29 29 H 1.08995 * 109.47107 * 149.99687 * 3 2 1 30 30 H 1.09000 * 109.46804 * 29.99166 * 3 2 1 31 31 H 1.08995 * 109.47755 * 59.99866 * 4 3 2 32 32 H 1.08999 * 109.47059 * 299.99355 * 4 3 2 33 33 H 1.07998 * 120.41916 * 359.95342 * 6 5 4 34 34 H 1.08008 * 120.78688 * 180.22921 * 7 6 5 35 35 H 1.08002 * 120.42244 * 179.78279 * 8 7 6 36 36 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 37 37 H 1.00898 * 111.00324 * 300.00448 * 15 13 11 38 38 H 1.00907 * 111.00247 * 63.96338 * 15 13 11 39 39 H 1.09005 * 109.46473 * 304.99805 * 16 13 11 40 40 H 1.08994 * 109.47584 * 64.99337 * 16 13 11 41 41 H 1.09001 * 109.46550 * 299.99365 * 17 16 13 42 42 H 1.08994 * 109.47399 * 59.99085 * 17 16 13 43 43 H 0.97003 * 120.00363 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2065 3.0152 -1.4426 6 6 4.4002 3.1143 -2.1323 7 6 5.0832 4.3207 -2.1304 8 6 4.5426 5.3841 -1.4234 9 6 3.3443 5.2103 -0.7576 10 7 2.7195 4.0492 -0.7850 11 6 2.1389 -1.1671 0.0005 12 8 3.3516 -1.1671 0.0010 13 6 1.3853 -2.4723 0.0017 14 1 0.5221 -2.3929 0.6625 15 7 2.2678 -3.5467 0.4758 16 6 0.9130 -2.7897 -1.4185 17 6 0.0431 -4.0481 -1.3974 18 6 -0.4226 -4.3604 -2.7962 19 1 -0.1280 -3.7246 -3.6180 20 6 -1.2249 -5.4577 -3.0268 21 7 -1.5833 -6.2322 -2.0262 22 14 -1.8016 -5.8452 -4.7609 23 1 -1.2628 -4.8293 -5.7003 24 1 -1.3142 -7.1913 -5.1553 25 1 -3.2857 -5.8235 -4.8053 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 3.1498 1.1384 0.5139 30 1 1.6083 2.0284 0.5137 31 1 1.5000 1.8407 -1.9564 32 1 3.0415 0.9507 -1.9563 33 1 4.7941 2.2638 -2.6687 34 1 6.0163 4.4286 -2.6636 35 1 5.0494 6.3375 -1.3972 36 1 2.9145 6.0348 -0.2081 37 1 3.0762 -3.6403 -0.1207 38 1 2.5417 -3.3930 1.4347 39 1 0.3312 -1.9522 -1.8035 40 1 1.7780 -2.9567 -2.0603 41 1 0.6249 -4.8856 -1.0124 42 1 -0.8219 -3.8812 -0.7556 43 1 -2.1474 -7.0045 -2.1885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424173579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:56 Heat of formation + Delta-G solvation = -12.127889 kcal Electronic energy + Delta-G solvation = -22704.705817 eV Core-core repulsion = 19363.316703 eV Total energy + Delta-G solvation = -3341.389114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53960 -39.87809 -36.06751 -35.23062 -33.46487 -32.77681 -32.56364 -30.09974 -29.62177 -26.73600 -26.45658 -24.70589 -23.77398 -22.90193 -21.59694 -20.32804 -18.86092 -17.26406 -17.14955 -16.50592 -16.36420 -15.94413 -15.69849 -15.44743 -14.91955 -14.48710 -14.32962 -13.97874 -13.68095 -13.54506 -13.13735 -13.06822 -12.97208 -12.39671 -12.31253 -12.19271 -11.92579 -11.86951 -11.47319 -11.12162 -10.90206 -10.64008 -10.48996 -10.15527 -10.05032 -9.76086 -9.71857 -9.35187 -9.29411 -8.97587 -8.60849 -8.33120 -8.17927 -5.93170 -3.95160 0.82262 0.99624 2.77789 3.08865 3.34202 3.41900 3.45621 3.52530 4.04210 4.45467 4.50663 4.55892 4.72229 4.79731 4.84107 4.98111 5.11560 5.12950 5.16720 5.26725 5.40787 5.42751 5.43408 5.55303 5.64065 5.69003 5.82904 5.88623 5.90864 5.95967 5.96512 6.41968 6.46198 6.54029 6.68986 7.09744 7.35956 7.54669 7.71793 7.77366 7.82301 7.97394 8.14335 8.30505 8.49529 9.13146 9.68053 11.17759 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.002986 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.886191 B = 9374.299857 C = 9961.916221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.616 5.616 3 C 0.126 3.874 4 C -0.086 4.086 5 C 0.139 3.861 6 C -0.166 4.166 7 C -0.073 4.073 8 C -0.183 4.183 9 C 0.101 3.899 10 N -0.483 5.483 11 C 0.483 3.517 12 O -0.554 6.554 13 C 0.077 3.923 14 H 0.099 0.901 15 N -0.808 5.808 16 C -0.094 4.094 17 C 0.032 3.968 18 C -0.520 4.520 19 H 0.052 0.948 20 C 0.057 3.943 21 N -0.892 5.892 22 Si 0.888 3.112 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.347 0.653 38 H 0.333 0.667 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.034 0.966 42 H 0.013 0.987 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.438 22.336 4.121 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.350 5.350 3 C 0.002 3.998 4 C -0.125 4.125 5 C 0.001 3.999 6 C -0.186 4.186 7 C -0.099 4.099 8 C -0.202 4.202 9 C -0.056 4.056 10 N -0.192 5.192 11 C 0.271 3.729 12 O -0.432 6.432 13 C -0.039 4.039 14 H 0.117 0.883 15 N -0.335 5.335 16 C -0.133 4.133 17 C -0.005 4.005 18 C -0.559 4.559 19 H 0.070 0.930 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.716 3.284 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.172 0.828 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.559 21.565 4.477 23.629 hybrid contribution 1.145 0.814 -1.382 1.971 sum 9.705 22.378 3.095 24.587 Atomic orbital electron populations 1.21953 0.78835 1.03327 1.02763 1.48039 1.07396 1.05801 1.73725 1.21303 0.98070 0.85045 0.95383 1.20938 1.00645 0.91695 0.99225 1.21194 0.92312 0.94253 0.92184 1.22068 0.96291 0.98973 1.01283 1.21610 0.99295 0.92622 0.96412 1.22129 0.98051 1.00157 0.99901 1.22755 0.92025 0.94743 0.96113 1.67480 1.34058 0.99686 1.18021 1.22770 0.88794 0.87046 0.74334 1.90626 1.14369 1.87657 1.50558 1.21901 0.95740 0.84666 1.01587 0.88307 1.59020 1.23980 1.43837 1.06712 1.21646 1.00134 1.01447 0.90049 1.19011 0.93694 0.91432 0.96413 1.21311 1.30232 1.10403 0.93948 0.92964 1.24991 0.96409 0.96316 0.96635 1.69984 1.36620 1.16129 1.30459 0.86607 0.78374 0.78217 0.85201 1.19866 1.21081 1.21108 0.91839 0.90134 0.91189 0.90436 0.89701 0.89528 0.89773 0.84646 0.84835 0.84904 0.82757 0.83909 0.85525 0.92722 0.92977 0.94714 0.96899 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 9.61 59.84 0.57 1.40 16 2 N -0.62 -8.24 2.87 -181.57 -0.52 -8.76 16 3 C 0.13 1.54 5.31 -4.04 -0.02 1.52 16 4 C -0.09 -1.00 5.94 -27.88 -0.17 -1.17 16 5 C 0.14 1.56 6.18 -82.58 -0.51 1.05 16 6 C -0.17 -1.65 9.71 -39.44 -0.38 -2.03 16 7 C -0.07 -0.59 10.18 -39.28 -0.40 -0.99 16 8 C -0.18 -1.37 10.11 -39.44 -0.40 -1.77 16 9 C 0.10 0.88 11.18 -17.55 -0.20 0.69 16 10 N -0.48 -5.41 9.88 -9.47 -0.09 -5.50 16 11 C 0.48 7.82 6.92 -10.98 -0.08 7.74 16 12 O -0.55 -10.31 15.83 5.56 0.09 -10.22 16 13 C 0.08 1.30 2.42 -68.86 -0.17 1.14 16 14 H 0.10 1.59 6.31 -51.93 -0.33 1.26 16 15 N -0.81 -13.86 8.44 -5.65 -0.05 -13.91 16 16 C -0.09 -1.90 4.71 -26.73 -0.13 -2.03 16 17 C 0.03 0.80 4.86 -27.89 -0.14 0.67 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 22 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 27 H 0.08 0.91 5.94 -51.93 -0.31 0.60 16 28 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 29 H 0.08 1.08 7.42 -51.93 -0.39 0.69 16 30 H 0.08 0.94 7.70 -51.93 -0.40 0.54 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.07 7.87 -51.93 -0.41 0.66 16 33 H 0.14 1.20 7.95 -52.49 -0.42 0.78 16 34 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 36 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.35 6.03 8.58 -39.29 -0.34 5.70 16 38 H 0.33 4.99 9.06 -39.29 -0.36 4.64 16 39 H 0.05 1.04 6.94 -51.93 -0.36 0.68 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -33.44 358.57 -8.46 -41.90 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.59 Total: 7.72 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.41 Total: -7.18 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.07 Total: -54.30 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.44 -8.46 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.775 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds