Wall clock time and date at job start Tue Mar 31 2020 07:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46504 * 120.00080 * 2 1 4 4 C 1.53000 * 109.46739 * 270.00218 * 3 2 1 5 5 C 1.50707 * 109.46899 * 180.02562 * 4 3 2 6 6 C 1.38227 * 119.62059 * 125.01804 * 5 4 3 7 7 C 1.38627 * 119.15702 * 179.74122 * 6 5 4 8 8 C 1.38669 * 118.42389 * 0.47826 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.49762 * 8 7 6 10 10 N 1.31856 * 119.61137 * 304.99234 * 5 4 3 11 11 C 1.34774 * 120.00361 * 179.97438 * 2 1 3 12 12 O 1.21274 * 120.00195 * 180.02562 * 11 2 1 13 13 C 1.50707 * 119.99569 * 359.97438 * 11 2 1 14 14 H 1.08996 * 109.47502 * 320.00169 * 13 11 2 15 15 N 1.46897 * 109.46826 * 200.00082 * 13 11 2 16 16 C 1.52998 * 109.47000 * 80.00745 * 13 11 2 17 17 C 1.52999 * 109.47416 * 185.00138 * 16 13 11 18 18 C 1.50695 * 109.47217 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00021 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99831 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00323 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99908 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.46962 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46979 * 120.00126 * 22 20 18 25 25 H 1.48499 * 109.47007 * 239.99917 * 22 20 18 26 26 H 1.09007 * 109.47617 * 90.00394 * 1 2 3 27 27 H 1.09005 * 109.47529 * 209.99802 * 1 2 3 28 28 H 1.09000 * 109.47756 * 330.00532 * 1 2 3 29 29 H 1.08995 * 109.47107 * 149.99687 * 3 2 1 30 30 H 1.09000 * 109.46804 * 29.99166 * 3 2 1 31 31 H 1.08995 * 109.47755 * 59.99866 * 4 3 2 32 32 H 1.08999 * 109.47059 * 299.99355 * 4 3 2 33 33 H 1.07998 * 120.41916 * 359.95342 * 6 5 4 34 34 H 1.08008 * 120.78688 * 180.22921 * 7 6 5 35 35 H 1.08002 * 120.42244 * 179.78279 * 8 7 6 36 36 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 37 37 H 1.00898 * 111.00324 * 300.00448 * 15 13 11 38 38 H 1.00907 * 111.00247 * 63.96338 * 15 13 11 39 39 H 1.09005 * 109.46473 * 304.99805 * 16 13 11 40 40 H 1.08994 * 109.47584 * 64.99337 * 16 13 11 41 41 H 1.09001 * 109.46550 * 299.99365 * 17 16 13 42 42 H 1.08994 * 109.47399 * 59.99085 * 17 16 13 43 43 H 0.97003 * 120.00363 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2065 3.0152 -1.4426 6 6 4.4002 3.1143 -2.1323 7 6 5.0832 4.3207 -2.1304 8 6 4.5426 5.3841 -1.4234 9 6 3.3443 5.2103 -0.7576 10 7 2.7195 4.0492 -0.7850 11 6 2.1389 -1.1671 0.0005 12 8 3.3516 -1.1671 0.0010 13 6 1.3853 -2.4723 0.0017 14 1 0.5221 -2.3929 0.6625 15 7 2.2678 -3.5467 0.4758 16 6 0.9130 -2.7897 -1.4185 17 6 0.0431 -4.0481 -1.3974 18 6 -0.4226 -4.3604 -2.7962 19 1 -0.1280 -3.7246 -3.6180 20 6 -1.2249 -5.4577 -3.0268 21 7 -1.5833 -6.2322 -2.0262 22 14 -1.8016 -5.8452 -4.7609 23 1 -1.2628 -4.8293 -5.7003 24 1 -1.3142 -7.1913 -5.1553 25 1 -3.2857 -5.8235 -4.8053 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 3.1498 1.1384 0.5139 30 1 1.6083 2.0284 0.5137 31 1 1.5000 1.8407 -1.9564 32 1 3.0415 0.9507 -1.9563 33 1 4.7941 2.2638 -2.6687 34 1 6.0163 4.4286 -2.6636 35 1 5.0494 6.3375 -1.3972 36 1 2.9145 6.0348 -0.2081 37 1 3.0762 -3.6403 -0.1207 38 1 2.5417 -3.3930 1.4347 39 1 0.3312 -1.9522 -1.8035 40 1 1.7780 -2.9567 -2.0603 41 1 0.6249 -4.8856 -1.0124 42 1 -0.8219 -3.8812 -0.7556 43 1 -2.1474 -7.0045 -2.1885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424173579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:55 Heat of formation + Delta-G solvation = -34.729314 kcal Electronic energy + Delta-G solvation = -22705.685888 eV Core-core repulsion = 19363.316703 eV Total energy + Delta-G solvation = -3342.369186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42949 -40.95347 -37.24099 -36.77874 -34.85926 -34.24142 -33.26212 -31.92103 -30.51172 -28.21000 -27.60998 -26.11375 -24.60015 -24.15187 -22.54242 -22.01867 -20.12864 -18.59743 -18.25626 -17.87045 -17.31097 -17.09741 -16.88499 -16.57211 -16.37429 -15.93897 -15.45309 -15.07620 -14.91785 -14.42557 -14.30322 -14.21760 -14.00912 -13.81511 -13.66032 -13.52720 -13.17223 -13.12030 -12.80112 -12.56811 -12.48378 -12.22731 -12.04522 -11.73079 -11.58725 -11.20502 -10.96746 -10.82828 -10.47983 -10.44135 -10.04394 -9.66035 -9.60956 -8.12553 -6.22476 0.14065 0.34261 1.42066 1.43069 1.47782 1.55685 1.97847 2.45539 2.83142 3.20627 3.32566 3.46418 3.65826 3.76946 3.99562 4.02877 4.07643 4.12228 4.22389 4.26286 4.31685 4.36839 4.48539 4.66420 4.67319 4.76027 4.81413 4.83662 4.90102 4.99453 5.04089 5.23716 5.26582 5.26970 5.48148 5.59141 5.78663 5.86145 6.00269 6.07681 6.29688 6.32519 6.50916 6.96248 7.01622 7.04676 7.45595 8.98871 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.002986 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.886191 B = 9374.299857 C = 9961.916221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.609 5.609 3 C 0.132 3.868 4 C -0.077 4.077 5 C 0.116 3.884 6 C -0.183 4.183 7 C -0.076 4.076 8 C -0.175 4.175 9 C 0.089 3.911 10 N -0.505 5.505 11 C 0.485 3.515 12 O -0.581 6.581 13 C 0.084 3.916 14 H 0.111 0.889 15 N -0.819 5.819 16 C -0.079 4.079 17 C 0.041 3.959 18 C -0.540 4.540 19 H 0.055 0.945 20 C 0.002 3.998 21 N -0.930 5.930 22 Si 0.958 3.042 23 H -0.264 1.264 24 H -0.282 1.282 25 H -0.277 1.277 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.181 0.819 37 H 0.344 0.656 38 H 0.346 0.654 39 H 0.067 0.933 40 H 0.039 0.961 41 H 0.004 0.996 42 H -0.004 1.004 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.488 24.634 3.477 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.340 5.340 3 C 0.009 3.991 4 C -0.117 4.117 5 C -0.022 4.022 6 C -0.203 4.203 7 C -0.102 4.102 8 C -0.194 4.194 9 C -0.068 4.068 10 N -0.215 5.215 11 C 0.273 3.727 12 O -0.462 6.462 13 C -0.032 4.032 14 H 0.129 0.871 15 N -0.348 5.348 16 C -0.117 4.117 17 C 0.004 3.996 18 C -0.579 4.579 19 H 0.073 0.927 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.784 3.216 23 H -0.188 1.188 24 H -0.208 1.208 25 H -0.203 1.203 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.154 0.846 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.198 0.802 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.014 0.986 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.592 23.894 3.839 25.681 hybrid contribution 1.147 0.187 -1.143 1.630 sum 9.739 24.081 2.696 26.115 Atomic orbital electron populations 1.22155 0.77228 1.04793 1.03279 1.48071 1.08420 1.05401 1.72137 1.21314 0.97339 0.84561 0.95923 1.20776 1.00547 0.91956 0.98372 1.21115 0.93139 0.94195 0.93702 1.22217 0.96324 1.00120 1.01614 1.21982 1.00006 0.91960 0.96264 1.22518 0.97402 1.01221 0.98279 1.23293 0.92606 0.94593 0.96332 1.67431 1.35006 1.00464 1.18632 1.22433 0.88269 0.87464 0.74565 1.90615 1.15410 1.88040 1.52126 1.21699 0.96293 0.85365 0.99794 0.87133 1.59005 1.23986 1.44221 1.07571 1.21360 0.98821 0.99431 0.92132 1.18812 0.93289 0.92714 0.94807 1.21741 1.30283 1.10654 0.95173 0.92681 1.25887 0.96554 0.96177 1.00978 1.70109 1.37375 1.16707 1.32832 0.85500 0.78075 0.78060 0.80004 1.18816 1.20778 1.20259 0.91748 0.90225 0.88266 0.92216 0.88117 0.89421 0.91438 0.84558 0.82262 0.81644 0.80239 0.84207 0.84128 0.91397 0.94174 0.97728 0.98600 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 9.61 127.77 1.23 2.62 16 2 N -0.61 -15.81 2.87 -846.76 -2.43 -18.25 16 3 C 0.13 3.17 5.31 86.38 0.46 3.63 16 4 C -0.08 -1.81 5.94 29.85 0.18 -1.64 16 5 C 0.12 2.57 6.18 42.55 0.26 2.84 16 6 C -0.18 -3.53 9.71 22.36 0.22 -3.31 16 7 C -0.08 -1.08 10.18 22.47 0.23 -0.85 16 8 C -0.17 -2.13 10.11 22.36 0.23 -1.90 16 9 C 0.09 1.36 11.18 84.67 0.95 2.31 16 10 N -0.51 -10.75 9.88 -183.88 -1.82 -12.57 16 11 C 0.49 15.66 6.92 87.66 0.61 16.27 16 12 O -0.58 -21.87 15.83 -3.01 -0.05 -21.92 16 13 C 0.08 2.86 2.42 44.17 0.11 2.97 16 14 H 0.11 3.51 6.31 -2.39 -0.02 3.49 16 15 N -0.82 -28.53 8.44 -171.80 -1.45 -29.98 16 16 C -0.08 -3.21 4.71 30.59 0.14 -3.07 16 17 C 0.04 2.13 4.86 29.85 0.15 2.27 16 18 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 19 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 20 C 0.00 0.10 5.46 84.65 0.46 0.56 16 21 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 22 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 26 H 0.06 1.36 7.65 -2.38 -0.02 1.34 16 27 H 0.08 1.69 5.94 -2.38 -0.01 1.68 16 28 H 0.10 1.50 7.89 -2.39 -0.02 1.48 16 29 H 0.06 1.67 7.42 -2.39 -0.02 1.65 16 30 H 0.10 2.11 7.70 -2.39 -0.02 2.09 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 1.77 7.87 -2.39 -0.02 1.75 16 33 H 0.14 2.45 7.95 -2.91 -0.02 2.43 16 34 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 36 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.34 12.27 8.58 -89.70 -0.77 11.50 16 38 H 0.35 10.40 9.06 -89.69 -0.81 9.59 16 39 H 0.07 2.55 6.94 -2.38 -0.02 2.54 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 42 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -72.50 358.57 1.44 -71.06 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.56 Total: 29.26 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 5.44 Total: -7.69 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -5.41 Total: -117.17 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.05 Total: -21.92 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -72.50 1.44 -71.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.330 kcal (2) G-P(sol) polarization free energy of solvation -72.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds