Wall clock time and date at job start Tue Mar 31 2020 07:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00155 * 2 1 4 4 C 1.52998 * 109.47117 * 90.00098 * 3 2 1 5 5 C 1.50703 * 109.47165 * 180.02562 * 4 3 2 6 6 C 1.38223 * 119.62264 * 125.02051 * 5 4 3 7 7 C 1.38628 * 119.16031 * 179.97438 * 6 5 4 8 8 C 1.38672 * 118.42475 * 359.97438 * 7 6 5 9 9 C 1.38186 * 119.15778 * 0.02562 * 8 7 6 10 10 N 1.31856 * 119.61279 * 304.99522 * 5 4 3 11 11 C 1.34775 * 120.00063 * 179.97438 * 2 1 3 12 12 O 1.21283 * 120.00141 * 179.97438 * 11 2 1 13 13 C 1.50703 * 120.00012 * 359.97438 * 11 2 1 14 14 H 1.09000 * 109.46701 * 40.00141 * 13 11 2 15 15 N 1.46897 * 109.46856 * 159.99656 * 13 11 2 16 16 C 1.52991 * 109.47050 * 280.00198 * 13 11 2 17 17 C 1.53001 * 109.47028 * 175.00336 * 16 13 11 18 18 C 1.50703 * 109.47397 * 180.02562 * 17 16 13 19 19 H 1.07994 * 119.99511 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99991 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00348 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99870 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46798 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47052 * 119.99681 * 22 20 18 25 25 H 1.48501 * 109.46867 * 239.99898 * 22 20 18 26 26 H 1.09003 * 109.46868 * 89.99812 * 1 2 3 27 27 H 1.09002 * 109.47443 * 210.00066 * 1 2 3 28 28 H 1.09000 * 109.47087 * 330.00307 * 1 2 3 29 29 H 1.09001 * 109.47193 * 329.99994 * 3 2 1 30 30 H 1.08999 * 109.47459 * 209.99921 * 3 2 1 31 31 H 1.08998 * 109.47414 * 60.00347 * 4 3 2 32 32 H 1.09005 * 109.47187 * 299.99620 * 4 3 2 33 33 H 1.07995 * 120.41821 * 359.95030 * 6 5 4 34 34 H 1.08006 * 120.78822 * 180.02562 * 7 6 5 35 35 H 1.07993 * 120.42192 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.60956 * 180.27218 * 9 8 7 37 37 H 1.00903 * 111.00125 * 60.00425 * 15 13 11 38 38 H 1.00905 * 110.99926 * 183.95128 * 15 13 11 39 39 H 1.09003 * 109.47125 * 294.99279 * 16 13 11 40 40 H 1.08998 * 109.47626 * 54.99991 * 16 13 11 41 41 H 1.09005 * 109.46809 * 299.99456 * 17 16 13 42 42 H 1.08993 * 109.47874 * 59.99541 * 17 16 13 43 43 H 0.97001 * 120.00288 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.2055 3.0158 1.4425 6 6 2.6946 4.0992 2.1322 7 6 3.3955 5.2953 2.1262 8 6 4.5897 5.3571 1.4241 9 6 5.0380 4.2325 0.7579 10 7 4.3444 3.1110 0.7849 11 6 2.1388 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0001 13 6 1.3853 -2.4723 0.0017 14 1 0.5217 -2.3937 -0.6586 15 7 2.2674 -3.5473 -0.4717 16 6 0.9140 -2.7877 1.4226 17 6 0.0441 -4.0463 1.4037 18 6 -0.4208 -4.3567 2.8032 19 1 -0.1250 -3.7202 3.6240 20 6 -1.2236 -5.4532 3.0357 21 7 -1.5842 -6.2280 2.0360 22 14 -1.7993 -5.8384 4.7706 23 1 -1.2589 -4.8217 5.7085 24 1 -3.2833 -5.8154 4.8162 25 1 -1.3125 -7.1844 5.1662 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6084 2.0284 -0.5138 30 1 3.1499 1.1384 -0.5138 31 1 3.0416 0.9508 1.9563 32 1 1.5001 1.8408 1.9563 33 1 1.7611 4.0151 2.6686 34 1 3.0207 6.1583 2.6566 35 1 5.1617 6.2727 1.3975 36 1 5.9693 4.2712 0.2124 37 1 3.0763 -3.6402 0.1243 38 1 1.7675 -4.4210 -0.5414 39 1 1.7795 -2.9540 2.0640 40 1 0.3324 -1.9498 1.8069 41 1 -0.8214 -3.8801 0.7623 42 1 0.6256 -4.8842 1.0194 43 1 -2.1487 -6.9996 2.1996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424173580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:00 Heat of formation + Delta-G solvation = -12.210234 kcal Electronic energy + Delta-G solvation = -22714.318024 eV Core-core repulsion = 19372.925339 eV Total energy + Delta-G solvation = -3341.392685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49187 -39.72480 -36.01329 -35.38842 -33.43387 -32.82435 -32.53548 -29.90625 -29.60356 -26.73422 -26.50371 -24.68972 -23.75567 -23.03305 -21.58320 -20.40646 -18.76282 -17.38514 -17.07172 -16.44377 -16.31569 -16.04672 -15.67052 -14.98409 -14.77667 -14.42511 -14.28837 -13.94797 -13.62955 -13.41531 -13.36946 -13.12106 -12.82792 -12.55289 -12.31126 -12.13529 -12.05703 -11.81628 -11.65578 -11.10520 -11.02759 -10.90955 -10.66141 -10.12536 -9.96219 -9.86544 -9.63331 -9.26973 -9.23931 -9.12457 -8.51308 -8.44426 -8.13682 -6.08967 -4.12030 0.84977 1.03252 2.98120 3.12421 3.25633 3.33821 3.37534 3.56794 4.09365 4.38867 4.47657 4.59056 4.76232 4.81233 4.85860 5.13467 5.15603 5.20621 5.24805 5.27459 5.30104 5.44849 5.48864 5.54962 5.62767 5.79194 5.79829 5.82880 5.90669 5.98188 6.07253 6.30901 6.45271 6.54114 6.65915 6.88266 7.42569 7.52243 7.61137 7.68427 7.80155 7.88419 7.95284 8.30974 8.50957 8.94284 9.53014 11.01940 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020938 B = 0.003015 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.972395 B = 9283.491396 C =10052.779036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.622 5.622 3 C 0.128 3.872 4 C -0.087 4.087 5 C 0.139 3.861 6 C -0.171 4.171 7 C -0.075 4.075 8 C -0.183 4.183 9 C 0.103 3.897 10 N -0.476 5.476 11 C 0.525 3.475 12 O -0.532 6.532 13 C 0.074 3.926 14 H 0.096 0.904 15 N -0.831 5.831 16 C -0.139 4.139 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.345 0.655 38 H 0.353 0.647 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.153 22.337 -2.722 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.357 5.357 3 C 0.005 3.995 4 C -0.126 4.126 5 C 0.001 3.999 6 C -0.191 4.191 7 C -0.101 4.101 8 C -0.203 4.203 9 C -0.054 4.054 10 N -0.186 5.186 11 C 0.313 3.687 12 O -0.407 6.407 13 C -0.041 4.041 14 H 0.114 0.886 15 N -0.363 5.363 16 C -0.178 4.178 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.173 0.827 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.090 21.865 -3.895 23.313 hybrid contribution -1.048 0.195 2.450 2.672 sum 6.042 22.060 -1.445 22.918 Atomic orbital electron populations 1.21987 0.79314 1.04080 1.02016 1.47859 1.07050 1.05719 1.75040 1.21255 0.98464 0.84591 0.95238 1.20961 0.99321 0.93026 0.99342 1.21218 0.91286 0.95222 0.92210 1.22025 1.01777 0.93695 1.01579 1.21585 0.94215 0.97758 0.96508 1.22139 0.97797 1.00423 0.99954 1.22809 0.98692 0.88018 0.95921 1.67551 1.06373 1.26848 1.17795 1.20929 0.87990 0.85262 0.74499 1.90646 1.14085 1.87243 1.48691 1.21506 0.95090 0.89298 0.98207 0.88596 1.58750 1.10928 1.09274 1.57349 1.22427 1.00647 1.01614 0.93161 1.19108 0.94001 0.90698 0.97481 1.21214 1.30592 1.10696 0.93571 0.92680 1.25011 0.96144 0.96172 0.96995 1.69957 1.36382 1.16150 1.30692 0.86541 0.78448 0.78295 0.84766 1.19760 1.20952 1.20959 0.92613 0.89427 0.91288 0.91123 0.88788 0.89227 0.90104 0.84740 0.84914 0.84934 0.82744 0.84167 0.83145 0.92687 0.92329 0.96329 0.96391 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 9.85 59.84 0.59 1.36 16 2 N -0.62 -8.70 2.87 -181.57 -0.52 -9.22 16 3 C 0.13 1.62 5.26 -4.04 -0.02 1.60 16 4 C -0.09 -1.03 5.94 -27.88 -0.17 -1.20 16 5 C 0.14 1.58 6.18 -82.59 -0.51 1.07 16 6 C -0.17 -1.54 9.71 -39.44 -0.38 -1.92 16 7 C -0.07 -0.57 10.18 -39.28 -0.40 -0.97 16 8 C -0.18 -1.40 10.11 -39.44 -0.40 -1.80 16 9 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 10 N -0.48 -5.96 9.88 -9.47 -0.09 -6.05 16 11 C 0.52 9.17 6.93 -10.98 -0.08 9.09 16 12 O -0.53 -10.92 15.83 5.56 0.09 -10.84 16 13 C 0.07 1.30 2.36 -68.87 -0.16 1.14 16 14 H 0.10 1.59 7.21 -51.93 -0.37 1.22 16 15 N -0.83 -14.87 8.94 -5.66 -0.05 -14.92 16 16 C -0.14 -2.72 4.45 -26.74 -0.12 -2.84 16 17 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 18 C -0.52 -14.20 9.11 -34.44 -0.31 -14.52 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 22 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.09 1.11 4.83 -51.93 -0.25 0.86 16 28 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 29 H 0.07 0.74 8.07 -51.93 -0.42 0.33 16 30 H 0.09 1.44 7.23 -51.93 -0.38 1.06 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 33 H 0.13 0.94 7.95 -52.49 -0.42 0.52 16 34 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.35 6.27 8.58 -39.29 -0.34 5.93 16 38 H 0.35 6.26 7.55 -39.29 -0.30 5.97 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.09 6.43 -51.93 -0.33 0.75 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -32.94 356.58 -8.37 -41.30 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.49 Total: 9.60 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.39 Total: -6.22 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.07 Total: -55.34 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.94 -8.37 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.091 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds