Wall clock time and date at job start Tue Mar 31 2020 07:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00155 * 2 1 4 4 C 1.52998 * 109.47117 * 90.00098 * 3 2 1 5 5 C 1.50703 * 109.47165 * 180.02562 * 4 3 2 6 6 C 1.38223 * 119.62264 * 125.02051 * 5 4 3 7 7 C 1.38628 * 119.16031 * 179.97438 * 6 5 4 8 8 C 1.38672 * 118.42475 * 359.97438 * 7 6 5 9 9 C 1.38186 * 119.15778 * 0.02562 * 8 7 6 10 10 N 1.31856 * 119.61279 * 304.99522 * 5 4 3 11 11 C 1.34775 * 120.00063 * 179.97438 * 2 1 3 12 12 O 1.21283 * 120.00141 * 179.97438 * 11 2 1 13 13 C 1.50703 * 120.00012 * 359.97438 * 11 2 1 14 14 H 1.09000 * 109.46701 * 40.00141 * 13 11 2 15 15 N 1.46897 * 109.46856 * 159.99656 * 13 11 2 16 16 C 1.52991 * 109.47050 * 280.00198 * 13 11 2 17 17 C 1.53001 * 109.47028 * 175.00336 * 16 13 11 18 18 C 1.50703 * 109.47397 * 180.02562 * 17 16 13 19 19 H 1.07994 * 119.99511 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99991 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00348 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99870 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46798 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47052 * 119.99681 * 22 20 18 25 25 H 1.48501 * 109.46867 * 239.99898 * 22 20 18 26 26 H 1.09003 * 109.46868 * 89.99812 * 1 2 3 27 27 H 1.09002 * 109.47443 * 210.00066 * 1 2 3 28 28 H 1.09000 * 109.47087 * 330.00307 * 1 2 3 29 29 H 1.09001 * 109.47193 * 329.99994 * 3 2 1 30 30 H 1.08999 * 109.47459 * 209.99921 * 3 2 1 31 31 H 1.08998 * 109.47414 * 60.00347 * 4 3 2 32 32 H 1.09005 * 109.47187 * 299.99620 * 4 3 2 33 33 H 1.07995 * 120.41821 * 359.95030 * 6 5 4 34 34 H 1.08006 * 120.78822 * 180.02562 * 7 6 5 35 35 H 1.07993 * 120.42192 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.60956 * 180.27218 * 9 8 7 37 37 H 1.00903 * 111.00125 * 60.00425 * 15 13 11 38 38 H 1.00905 * 110.99926 * 183.95128 * 15 13 11 39 39 H 1.09003 * 109.47125 * 294.99279 * 16 13 11 40 40 H 1.08998 * 109.47626 * 54.99991 * 16 13 11 41 41 H 1.09005 * 109.46809 * 299.99456 * 17 16 13 42 42 H 1.08993 * 109.47874 * 59.99541 * 17 16 13 43 43 H 0.97001 * 120.00288 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.2055 3.0158 1.4425 6 6 2.6946 4.0992 2.1322 7 6 3.3955 5.2953 2.1262 8 6 4.5897 5.3571 1.4241 9 6 5.0380 4.2325 0.7579 10 7 4.3444 3.1110 0.7849 11 6 2.1388 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0001 13 6 1.3853 -2.4723 0.0017 14 1 0.5217 -2.3937 -0.6586 15 7 2.2674 -3.5473 -0.4717 16 6 0.9140 -2.7877 1.4226 17 6 0.0441 -4.0463 1.4037 18 6 -0.4208 -4.3567 2.8032 19 1 -0.1250 -3.7202 3.6240 20 6 -1.2236 -5.4532 3.0357 21 7 -1.5842 -6.2280 2.0360 22 14 -1.7993 -5.8384 4.7706 23 1 -1.2589 -4.8217 5.7085 24 1 -3.2833 -5.8154 4.8162 25 1 -1.3125 -7.1844 5.1662 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6084 2.0284 -0.5138 30 1 3.1499 1.1384 -0.5138 31 1 3.0416 0.9508 1.9563 32 1 1.5001 1.8408 1.9563 33 1 1.7611 4.0151 2.6686 34 1 3.0207 6.1583 2.6566 35 1 5.1617 6.2727 1.3975 36 1 5.9693 4.2712 0.2124 37 1 3.0763 -3.6402 0.1243 38 1 1.7675 -4.4210 -0.5414 39 1 1.7795 -2.9540 2.0640 40 1 0.3324 -1.9498 1.8069 41 1 -0.8214 -3.8801 0.7623 42 1 0.6256 -4.8842 1.0194 43 1 -2.1487 -6.9996 2.1996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424173580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:59 Heat of formation + Delta-G solvation = -34.628073 kcal Electronic energy + Delta-G solvation = -22715.290135 eV Core-core repulsion = 19372.925339 eV Total energy + Delta-G solvation = -3342.364795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35831 -40.88939 -37.33652 -36.86462 -34.87758 -34.21657 -33.23174 -31.69446 -30.51346 -28.23745 -27.58655 -26.15910 -24.60357 -24.20873 -22.51983 -22.04601 -20.07264 -18.80917 -18.22858 -17.77630 -17.21855 -17.18771 -16.60186 -16.42086 -16.05465 -15.89570 -15.62051 -15.15481 -14.85578 -14.53957 -14.36559 -14.25238 -13.98997 -13.75772 -13.65271 -13.46307 -13.20458 -13.14396 -12.84273 -12.64578 -12.51096 -12.48935 -12.05885 -11.76864 -11.69588 -11.27268 -10.79740 -10.68026 -10.55323 -10.34383 -9.98990 -9.68741 -9.56326 -8.20545 -6.30754 0.17461 0.39807 1.39277 1.41114 1.52648 1.60318 1.97420 2.40676 2.86710 3.13248 3.36925 3.55737 3.74767 3.77916 4.02310 4.11069 4.11605 4.18028 4.24446 4.26719 4.31450 4.34238 4.49828 4.63198 4.68096 4.72888 4.79728 4.83808 4.94494 4.97470 5.07668 5.11703 5.26848 5.29483 5.48239 5.56291 5.66087 5.81823 5.82954 6.04860 6.22000 6.36922 6.46944 6.84742 7.10617 7.17937 7.38424 8.90454 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020938 B = 0.003015 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.972395 B = 9283.491396 C =10052.779036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.613 5.613 3 C 0.132 3.868 4 C -0.078 4.078 5 C 0.112 3.888 6 C -0.170 4.170 7 C -0.075 4.075 8 C -0.174 4.174 9 C 0.082 3.918 10 N -0.518 5.518 11 C 0.521 3.479 12 O -0.571 6.571 13 C 0.081 3.919 14 H 0.109 0.891 15 N -0.832 5.832 16 C -0.120 4.120 17 C 0.032 3.968 18 C -0.542 4.542 19 H 0.055 0.945 20 C 0.005 3.995 21 N -0.927 5.927 22 Si 0.958 3.042 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.282 1.282 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.156 0.844 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.343 0.657 38 H 0.353 0.647 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.005 0.995 42 H 0.000 1.000 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 25.000 -1.661 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.346 5.346 3 C 0.009 3.991 4 C -0.117 4.117 5 C -0.026 4.026 6 C -0.190 4.190 7 C -0.101 4.101 8 C -0.194 4.194 9 C -0.075 4.075 10 N -0.228 5.228 11 C 0.310 3.690 12 O -0.449 6.449 13 C -0.034 4.034 14 H 0.126 0.874 15 N -0.363 5.363 16 C -0.160 4.160 17 C -0.006 4.006 18 C -0.580 4.580 19 H 0.073 0.927 20 C -0.193 4.193 21 N -0.567 5.567 22 Si 0.784 3.216 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.208 1.208 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.173 0.827 34 H 0.183 0.817 35 H 0.181 0.819 36 H 0.186 0.814 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.023 0.977 42 H 0.018 0.982 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.986 24.563 -2.836 25.441 hybrid contribution -0.693 -0.544 2.086 2.264 sum 5.293 24.019 -0.750 24.607 Atomic orbital electron populations 1.22211 0.77200 1.04970 1.03499 1.47912 1.08347 1.05149 1.73207 1.21288 0.97386 0.84339 0.96118 1.20832 0.99929 0.92736 0.98238 1.21199 0.91698 0.95693 0.93963 1.22263 1.02554 0.93389 1.00808 1.22029 0.93830 0.98230 0.96024 1.22499 0.97847 1.00706 0.98315 1.23182 0.99281 0.88165 0.96842 1.67461 1.07468 1.28705 1.19213 1.20857 0.87483 0.86112 0.74583 1.90629 1.15633 1.87835 1.50851 1.21434 0.95415 0.89555 0.96972 0.87358 1.58764 1.10912 1.09416 1.57236 1.22162 0.99329 0.99994 0.94486 1.18959 0.93785 0.92019 0.95799 1.21626 1.30625 1.10859 0.94869 0.92703 1.25856 0.96326 0.96075 1.01041 1.70067 1.37121 1.16691 1.32815 0.85496 0.78155 0.78059 0.79925 1.18942 1.20153 1.20757 0.90837 0.90839 0.88081 0.88304 0.91910 0.92732 0.87823 0.82659 0.81660 0.81852 0.81412 0.84458 0.83237 0.94108 0.91016 0.97695 0.98171 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.27 9.85 127.77 1.26 2.53 16 2 N -0.61 -16.68 2.87 -846.76 -2.43 -19.12 16 3 C 0.13 3.29 5.26 86.38 0.45 3.74 16 4 C -0.08 -1.83 5.94 29.85 0.18 -1.66 16 5 C 0.11 2.49 6.18 42.55 0.26 2.76 16 6 C -0.17 -2.68 9.71 22.36 0.22 -2.46 16 7 C -0.08 -0.91 10.18 22.47 0.23 -0.68 16 8 C -0.17 -2.21 10.11 22.36 0.23 -1.98 16 9 C 0.08 1.51 11.18 84.67 0.95 2.46 16 10 N -0.52 -13.12 9.88 -183.88 -1.82 -14.93 16 11 C 0.52 18.43 6.93 87.66 0.61 19.04 16 12 O -0.57 -24.35 15.83 -3.04 -0.05 -24.40 16 13 C 0.08 2.88 2.36 44.17 0.10 2.98 16 14 H 0.11 3.55 7.21 -2.39 -0.02 3.54 16 15 N -0.83 -30.52 8.94 -171.82 -1.54 -32.05 16 16 C -0.12 -4.75 4.45 30.59 0.14 -4.61 16 17 C 0.03 1.54 4.74 29.85 0.14 1.69 16 18 C -0.54 -29.57 9.11 25.60 0.23 -29.34 16 19 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 20 C 0.01 0.30 5.46 84.65 0.46 0.76 16 21 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 22 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.73 4.83 -2.39 -0.01 1.72 16 28 H 0.10 1.42 8.07 -2.39 -0.02 1.40 16 29 H 0.10 1.90 8.07 -2.39 -0.02 1.88 16 30 H 0.06 2.00 7.23 -2.39 -0.02 1.98 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 1.85 7.87 -2.38 -0.02 1.83 16 33 H 0.16 1.67 7.95 -2.91 -0.02 1.64 16 34 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 35 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 36 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.34 12.91 8.58 -89.69 -0.77 12.14 16 38 H 0.35 12.88 7.55 -89.69 -0.68 12.21 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 2.63 6.43 -2.39 -0.02 2.62 16 41 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 42 H 0.00 0.00 6.87 -2.39 -0.02 -0.02 16 43 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -72.91 356.58 1.51 -71.40 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.43 Total: 32.59 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.46 Total: -4.78 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -5.50 Total: -119.98 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.05 Total: -24.40 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -72.91 1.51 -71.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.772 kcal (2) G-P(sol) polarization free energy of solvation -72.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds