Wall clock time and date at job start Tue Mar 31 2020 06:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 C 1.38643 * 120.79007 * 269.71785 * 5 4 3 7 7 C 1.38208 * 119.16141 * 179.80107 * 6 5 4 8 8 N 1.31868 * 120.76386 * 0.48541 * 7 6 5 9 9 C 1.31874 * 121.72670 * 359.74017 * 8 7 6 10 10 C 1.38206 * 120.76037 * 0.02562 * 9 8 7 11 11 C 1.34775 * 120.00005 * 270.00252 * 3 2 1 12 12 O 1.21285 * 119.99996 * 179.97438 * 11 3 2 13 13 C 1.50698 * 120.00318 * 0.02562 * 11 3 2 14 14 H 1.09008 * 109.47236 * 39.99224 * 13 11 3 15 15 N 1.46896 * 109.47704 * 159.99785 * 13 11 3 16 16 C 1.53001 * 109.46955 * 279.99900 * 13 11 3 17 17 C 1.52995 * 109.47289 * 174.99854 * 16 13 11 18 18 C 1.50703 * 109.47203 * 179.97438 * 17 16 13 19 19 H 1.08001 * 119.99972 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99961 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99933 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00190 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47142 * 90.00287 * 22 20 18 24 24 H 1.48494 * 109.47384 * 210.00292 * 22 20 18 25 25 H 1.48501 * 109.47145 * 330.00463 * 22 20 18 26 26 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 27 27 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 28 28 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 30 30 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 31 31 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 32 32 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 33 33 H 1.08003 * 120.42289 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.61594 * 180.25324 * 7 6 5 35 35 H 1.07991 * 119.61819 * 180.02562 * 9 8 7 36 36 H 1.08001 * 120.41568 * 179.97438 * 10 9 8 37 37 H 1.00900 * 111.00007 * 296.05248 * 15 13 11 38 38 H 1.00903 * 110.99693 * 59.99338 * 15 13 11 39 39 H 1.09000 * 109.47216 * 294.99976 * 16 13 11 40 40 H 1.08999 * 109.47478 * 54.99974 * 16 13 11 41 41 H 1.09001 * 109.47342 * 299.99717 * 17 16 13 42 42 H 1.08999 * 109.47506 * 59.99653 * 17 16 13 43 43 H 0.96999 * 119.99606 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 6 4.0114 0.7540 2.5088 7 6 5.3282 0.5664 2.8844 8 7 6.2671 1.4060 2.4938 9 6 5.9934 2.4469 1.7318 10 6 4.7000 2.6958 1.3131 11 6 2.2430 2.0165 -1.1672 12 8 2.6469 3.1602 -1.1672 13 6 1.9912 1.3064 -2.4723 14 1 1.0804 0.7128 -2.3932 15 7 1.8388 2.2962 -3.5470 16 6 3.1728 0.3875 -2.7891 17 6 2.8634 -0.4257 -4.0476 18 6 4.0275 -1.3303 -4.3600 19 1 4.9009 -1.3254 -3.7247 20 6 3.9779 -2.1635 -5.4574 21 7 4.9941 -2.9527 -5.7303 22 14 2.4676 -2.1716 -6.5566 23 1 2.6368 -1.1675 -7.6376 24 1 2.2984 -3.5198 -7.1555 25 1 1.2670 -1.8336 -5.7507 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5818 1.6876 2.0284 32 1 2.0957 3.1410 1.1384 33 1 3.2463 0.0653 2.8354 34 1 5.5906 -0.2754 3.5080 35 1 6.7891 3.1125 1.4316 36 1 4.4821 3.5501 0.6894 37 1 1.0262 2.8743 -3.3936 38 1 2.6708 2.8596 -3.6403 39 1 4.0664 0.9890 -2.9558 40 1 3.3415 -0.2893 -1.9516 41 1 1.9698 -1.0273 -3.8809 42 1 2.6946 0.2511 -4.8852 43 1 4.9590 -3.5391 -6.5022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424174118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:30 Heat of formation + Delta-G solvation = -8.406945 kcal Electronic energy + Delta-G solvation = -23667.980586 eV Core-core repulsion = 20326.752824 eV Total energy + Delta-G solvation = -3341.227762 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66353 -39.76743 -36.38445 -35.55236 -33.39478 -32.74143 -31.30478 -30.55532 -30.48600 -27.90726 -26.15728 -24.07378 -23.54110 -22.99697 -21.91710 -20.16512 -19.10897 -17.44870 -16.90165 -16.82192 -16.40029 -16.16844 -15.75291 -15.48891 -15.08996 -14.20274 -14.13569 -13.99407 -13.79515 -13.77510 -13.53475 -13.03958 -12.81099 -12.59119 -12.55037 -12.35395 -12.03088 -11.70439 -11.51860 -11.33209 -10.94935 -10.85128 -10.40926 -10.00470 -9.86006 -9.73052 -9.67414 -9.59568 -9.23925 -9.13548 -8.83875 -8.52999 -8.41103 -6.00627 -3.98549 1.02723 1.07195 2.60662 2.95169 3.36000 3.42637 3.47354 3.77410 4.36382 4.39444 4.47002 4.49692 4.67927 4.78678 4.84163 4.94533 5.00898 5.06118 5.17181 5.26234 5.32485 5.35600 5.39678 5.53809 5.55530 5.62503 5.68588 5.70882 5.85154 6.00052 6.18224 6.22900 6.36922 6.45633 6.59883 6.83603 7.15937 7.33466 7.36127 7.53556 7.62718 7.84389 7.87456 8.12628 8.56539 9.03991 9.62113 11.12871 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015268 B = 0.004470 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.418975 B = 6262.229057 C = 6940.681281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.093 3.907 3 N -0.606 5.606 4 C 0.152 3.848 5 C -0.061 4.061 6 C -0.162 4.162 7 C 0.095 3.905 8 N -0.484 5.484 9 C 0.097 3.903 10 C -0.148 4.148 11 C 0.488 3.512 12 O -0.548 6.548 13 C 0.074 3.926 14 H 0.099 0.901 15 N -0.811 5.811 16 C -0.088 4.088 17 C -0.003 4.003 18 C -0.522 4.522 19 H 0.068 0.932 20 C 0.067 3.933 21 N -0.906 5.906 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.264 1.264 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.132 0.868 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.335 0.665 38 H 0.349 0.651 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.012 0.988 42 H 0.029 0.971 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 8.993 17.546 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.030 4.030 3 N -0.339 5.339 4 C 0.029 3.971 5 C -0.071 4.071 6 C -0.182 4.182 7 C -0.062 4.062 8 N -0.194 5.194 9 C -0.060 4.060 10 C -0.168 4.168 11 C 0.276 3.724 12 O -0.426 6.426 13 C -0.042 4.042 14 H 0.117 0.883 15 N -0.339 5.339 16 C -0.126 4.126 17 C -0.040 4.040 18 C -0.560 4.560 19 H 0.086 0.914 20 C -0.134 4.134 21 N -0.545 5.545 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.189 1.189 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.150 0.850 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.164 0.836 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.031 0.969 42 H 0.048 0.952 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.786 8.696 17.160 20.754 hybrid contribution -1.409 0.627 -0.057 1.543 sum -9.195 9.323 17.104 21.541 Atomic orbital electron populations 1.22213 0.95640 1.02730 1.02278 1.21832 0.94509 0.81965 1.04697 1.48137 1.65991 1.14709 1.05091 1.20314 0.91244 0.99472 0.86091 1.20667 0.96836 0.94418 0.95148 1.22033 0.98338 0.98207 0.99644 1.22739 0.88861 0.97383 0.97207 1.67665 1.37039 1.03602 1.11062 1.22789 0.95593 0.94273 0.93340 1.22202 0.93688 1.00919 1.00041 1.22679 0.75819 0.87043 0.86901 1.90623 1.45973 1.18431 1.87547 1.21919 1.02605 0.94757 0.84902 0.88294 1.59038 1.09116 1.22013 1.43703 1.21505 0.94246 0.96255 1.00613 1.19475 0.96858 0.94697 0.93008 1.21165 1.02444 1.20864 1.11506 0.91366 1.25010 0.96020 0.95053 0.97341 1.69928 1.30852 1.25344 1.28353 0.86743 0.84181 0.76976 0.81145 1.20266 1.21690 1.18903 0.92584 0.92203 0.90988 0.88426 0.90283 0.89494 0.88883 0.84993 0.82808 0.82779 0.84359 0.85351 0.83632 0.92279 0.92176 0.96944 0.95220 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.10 37.16 0.38 -1.05 16 2 C 0.09 0.94 5.68 -4.04 -0.02 0.91 16 3 N -0.61 -7.10 2.46 -175.06 -0.43 -7.53 16 4 C 0.15 1.54 5.58 -5.19 -0.03 1.51 16 5 C -0.06 -0.69 5.50 -104.32 -0.57 -1.27 16 6 C -0.16 -1.64 9.82 -39.44 -0.39 -2.03 16 7 C 0.10 1.07 11.18 -17.55 -0.20 0.87 16 8 N -0.48 -6.48 10.36 -13.25 -0.14 -6.61 16 9 C 0.10 1.21 11.18 -17.55 -0.20 1.01 16 10 C -0.15 -1.84 9.82 -39.44 -0.39 -2.23 16 11 C 0.49 7.11 6.91 -10.99 -0.08 7.04 16 12 O -0.55 -9.10 15.49 5.55 0.09 -9.01 16 13 C 0.07 1.14 2.31 -68.87 -0.16 0.98 16 14 H 0.10 1.42 6.12 -51.92 -0.32 1.10 16 15 N -0.81 -12.45 8.44 -5.65 -0.05 -12.50 16 16 C -0.09 -1.69 4.45 -26.73 -0.12 -1.81 16 17 C 0.00 -0.07 3.93 -27.88 -0.11 -0.18 16 18 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 19 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.91 -28.09 13.96 55.43 0.77 -27.32 16 22 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 25 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.55 7.15 -51.93 -0.37 0.18 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 1.18 4.83 -51.93 -0.25 0.93 16 30 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 31 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 32 H 0.09 1.02 7.38 -51.93 -0.38 0.63 16 33 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.14 1.75 7.72 -52.49 -0.41 1.35 16 37 H 0.33 4.39 9.06 -39.29 -0.36 4.03 16 38 H 0.35 5.52 8.58 -39.29 -0.34 5.18 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.12 6.43 -51.93 -0.33 0.79 16 41 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 42 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -33.77 353.18 -7.87 -41.65 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.46 Total: 8.36 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.31 Total: -9.54 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.16 Total: -53.96 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.77 -7.87 -41.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424174118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.238 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds