Wall clock time and date at job start Tue Mar 31 2020 06:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 C 1.38643 * 120.79007 * 269.71785 * 5 4 3 7 7 C 1.38208 * 119.16141 * 179.80107 * 6 5 4 8 8 N 1.31868 * 120.76386 * 0.48541 * 7 6 5 9 9 C 1.31874 * 121.72670 * 359.74017 * 8 7 6 10 10 C 1.38206 * 120.76037 * 0.02562 * 9 8 7 11 11 C 1.34775 * 120.00005 * 270.00252 * 3 2 1 12 12 O 1.21285 * 119.99996 * 179.97438 * 11 3 2 13 13 C 1.50698 * 120.00318 * 0.02562 * 11 3 2 14 14 H 1.09008 * 109.47236 * 39.99224 * 13 11 3 15 15 N 1.46896 * 109.47704 * 159.99785 * 13 11 3 16 16 C 1.53001 * 109.46955 * 279.99900 * 13 11 3 17 17 C 1.52995 * 109.47289 * 174.99854 * 16 13 11 18 18 C 1.50703 * 109.47203 * 179.97438 * 17 16 13 19 19 H 1.08001 * 119.99972 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99961 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99933 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00190 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47142 * 90.00287 * 22 20 18 24 24 H 1.48494 * 109.47384 * 210.00292 * 22 20 18 25 25 H 1.48501 * 109.47145 * 330.00463 * 22 20 18 26 26 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 27 27 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 28 28 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 30 30 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 31 31 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 32 32 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 33 33 H 1.08003 * 120.42289 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.61594 * 180.25324 * 7 6 5 35 35 H 1.07991 * 119.61819 * 180.02562 * 9 8 7 36 36 H 1.08001 * 120.41568 * 179.97438 * 10 9 8 37 37 H 1.00900 * 111.00007 * 296.05248 * 15 13 11 38 38 H 1.00903 * 110.99693 * 59.99338 * 15 13 11 39 39 H 1.09000 * 109.47216 * 294.99976 * 16 13 11 40 40 H 1.08999 * 109.47478 * 54.99974 * 16 13 11 41 41 H 1.09001 * 109.47342 * 299.99717 * 17 16 13 42 42 H 1.08999 * 109.47506 * 59.99653 * 17 16 13 43 43 H 0.96999 * 119.99606 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 6 4.0114 0.7540 2.5088 7 6 5.3282 0.5664 2.8844 8 7 6.2671 1.4060 2.4938 9 6 5.9934 2.4469 1.7318 10 6 4.7000 2.6958 1.3131 11 6 2.2430 2.0165 -1.1672 12 8 2.6469 3.1602 -1.1672 13 6 1.9912 1.3064 -2.4723 14 1 1.0804 0.7128 -2.3932 15 7 1.8388 2.2962 -3.5470 16 6 3.1728 0.3875 -2.7891 17 6 2.8634 -0.4257 -4.0476 18 6 4.0275 -1.3303 -4.3600 19 1 4.9009 -1.3254 -3.7247 20 6 3.9779 -2.1635 -5.4574 21 7 4.9941 -2.9527 -5.7303 22 14 2.4676 -2.1716 -6.5566 23 1 2.6368 -1.1675 -7.6376 24 1 2.2984 -3.5198 -7.1555 25 1 1.2670 -1.8336 -5.7507 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5818 1.6876 2.0284 32 1 2.0957 3.1410 1.1384 33 1 3.2463 0.0653 2.8354 34 1 5.5906 -0.2754 3.5080 35 1 6.7891 3.1125 1.4316 36 1 4.4821 3.5501 0.6894 37 1 1.0262 2.8743 -3.3936 38 1 2.6708 2.8596 -3.6403 39 1 4.0664 0.9890 -2.9558 40 1 3.3415 -0.2893 -1.9516 41 1 1.9698 -1.0273 -3.8809 42 1 2.6946 0.2511 -4.8852 43 1 4.9590 -3.5391 -6.5022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424174118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:29 Heat of formation + Delta-G solvation = -32.089797 kcal Electronic energy + Delta-G solvation = -23669.007551 eV Core-core repulsion = 20326.752824 eV Total energy + Delta-G solvation = -3342.254728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.65085 -40.76136 -37.38028 -36.97858 -34.87469 -34.17752 -32.32340 -32.16542 -31.30368 -29.12206 -27.57734 -25.26522 -24.53439 -23.97312 -23.02416 -21.84719 -20.19426 -18.91422 -18.45477 -17.77471 -17.49030 -17.14626 -16.71988 -16.60538 -16.33995 -16.05670 -15.23137 -15.02679 -14.82144 -14.72313 -14.63576 -14.55846 -14.12068 -13.87460 -13.53762 -13.50765 -13.27062 -12.90125 -12.80900 -12.40111 -12.26991 -12.11105 -11.93945 -11.73379 -11.54863 -11.30043 -11.16096 -10.74939 -10.71392 -10.57645 -10.11622 -9.77699 -9.65804 -8.25677 -6.29526 0.15705 0.17645 1.41112 1.42560 1.46460 1.55173 2.01354 2.40788 2.87839 3.10986 3.40617 3.53859 3.62334 3.64740 3.81276 4.01254 4.03718 4.13535 4.18763 4.22392 4.33958 4.36772 4.52773 4.58941 4.68685 4.73107 4.78838 4.84404 4.88999 4.98277 5.00407 5.12618 5.31640 5.36682 5.48489 5.49766 5.62446 5.71000 5.74775 6.03079 6.27443 6.31014 6.48664 6.78790 6.98519 7.03785 7.35206 8.91391 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015268 B = 0.004470 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.418975 B = 6262.229057 C = 6940.681281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.087 3.913 3 N -0.598 5.598 4 C 0.153 3.847 5 C -0.069 4.069 6 C -0.153 4.153 7 C 0.083 3.917 8 N -0.513 5.513 9 C 0.080 3.920 10 C -0.164 4.164 11 C 0.487 3.513 12 O -0.573 6.573 13 C 0.084 3.916 14 H 0.117 0.883 15 N -0.818 5.818 16 C -0.077 4.077 17 C 0.005 3.995 18 C -0.532 4.532 19 H 0.024 0.976 20 C 0.004 3.996 21 N -0.955 5.955 22 Si 0.954 3.046 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.239 1.239 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.180 0.820 35 H 0.163 0.837 36 H 0.128 0.872 37 H 0.349 0.651 38 H 0.345 0.655 39 H 0.033 0.967 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.995 8.616 18.695 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.035 4.035 3 N -0.330 5.330 4 C 0.031 3.969 5 C -0.078 4.078 6 C -0.173 4.173 7 C -0.074 4.074 8 N -0.223 5.223 9 C -0.076 4.076 10 C -0.184 4.184 11 C 0.274 3.726 12 O -0.453 6.453 13 C -0.032 4.032 14 H 0.135 0.865 15 N -0.348 5.348 16 C -0.116 4.116 17 C -0.032 4.032 18 C -0.570 4.570 19 H 0.042 0.958 20 C -0.192 4.192 21 N -0.596 5.596 22 Si 0.777 3.223 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.162 1.162 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.186 0.814 34 H 0.197 0.803 35 H 0.181 0.819 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.052 0.948 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.972 8.321 18.348 22.941 hybrid contribution -0.321 0.704 -0.327 0.840 sum -11.293 9.025 18.021 23.103 Atomic orbital electron populations 1.22167 0.93821 1.03656 1.02604 1.22004 0.95960 0.80742 1.04806 1.48150 1.64750 1.15238 1.04836 1.20476 0.91284 0.99162 0.85983 1.20888 0.97105 0.94552 0.95290 1.22379 0.98723 0.97918 0.98311 1.23288 0.89257 0.97615 0.97211 1.67673 1.38354 1.04346 1.11894 1.22990 0.96151 0.94703 0.93778 1.22236 0.94296 1.01327 1.00549 1.22386 0.75991 0.86748 0.87490 1.90621 1.47210 1.19505 1.87935 1.21686 1.01327 0.94429 0.85751 0.86512 1.59019 1.09599 1.22306 1.43828 1.21261 0.95037 0.96282 0.98978 1.19344 0.95029 0.94150 0.94676 1.21526 1.02767 1.21830 1.10873 0.95757 1.26009 0.99578 0.94510 0.99099 1.70089 1.33513 1.26616 1.29386 0.85609 0.80501 0.77185 0.79005 1.19818 1.21185 1.16217 0.90962 0.93188 0.89759 0.90619 0.87948 0.85666 0.89811 0.81400 0.80327 0.81941 0.85400 0.83749 0.84152 0.94765 0.91935 0.95614 0.95495 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 10.10 71.98 0.73 -1.38 16 2 C 0.09 1.48 5.68 86.38 0.49 1.97 16 3 N -0.60 -12.60 2.46 -826.16 -2.03 -14.63 16 4 C 0.15 2.70 5.58 85.63 0.48 3.18 16 5 C -0.07 -1.44 5.50 -19.67 -0.11 -1.55 16 6 C -0.15 -2.69 9.82 22.36 0.22 -2.47 16 7 C 0.08 1.73 11.18 84.68 0.95 2.67 16 8 N -0.51 -13.63 10.36 -195.84 -2.03 -15.66 16 9 C 0.08 2.04 11.18 84.68 0.95 2.99 16 10 C -0.16 -4.11 9.82 22.36 0.22 -3.89 16 11 C 0.49 13.60 6.91 87.66 0.61 14.21 16 12 O -0.57 -18.80 15.49 -3.05 -0.05 -18.85 16 13 C 0.08 2.48 2.31 44.17 0.10 2.58 16 14 H 0.12 3.05 6.12 -2.38 -0.01 3.04 16 15 N -0.82 -24.16 8.44 -171.80 -1.45 -25.61 16 16 C -0.08 -2.97 4.45 30.59 0.14 -2.83 16 17 C 0.01 0.25 3.93 29.85 0.12 0.37 16 18 C -0.53 -30.86 9.66 25.60 0.25 -30.61 16 19 H 0.02 1.57 7.99 -2.91 -0.02 1.54 16 20 C 0.00 0.25 5.47 84.65 0.46 0.72 16 21 N -0.96 -60.64 13.96 21.45 0.30 -60.34 16 22 Si 0.95 44.50 27.47 68.60 1.88 46.39 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 26 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.05 0.75 7.15 -2.38 -0.02 0.74 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.66 4.83 -2.39 -0.01 1.65 16 30 H 0.10 1.29 8.07 -2.39 -0.02 1.27 16 31 H 0.13 1.27 8.03 -2.39 -0.02 1.25 16 32 H 0.08 1.68 7.38 -2.39 -0.02 1.67 16 33 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.16 3.57 8.06 -2.92 -0.02 3.55 16 36 H 0.13 3.40 7.72 -2.91 -0.02 3.38 16 37 H 0.35 8.55 9.06 -89.69 -0.81 7.74 16 38 H 0.35 10.81 8.58 -89.69 -0.77 10.04 16 39 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 2.34 6.43 -2.39 -0.02 2.33 16 41 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 42 H 0.03 1.25 7.18 -2.39 -0.02 1.24 16 43 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -75.27 353.18 1.61 -73.66 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -0.61 Total: 29.09 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 5.59 Total: -14.06 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -5.21 Total: -116.24 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.05 Total: -18.85 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Total: -75.27 1.61 -73.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424174118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.573 kcal (2) G-P(sol) polarization free energy of solvation -75.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds