Wall clock time and date at job start Tue Mar 31 2020 06:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47081 * 2 1 4 4 C 1.46504 * 119.99591 * 269.72064 * 3 2 1 5 5 C 1.50701 * 109.47121 * 270.27733 * 4 3 2 6 6 H 1.08002 * 120.00059 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99767 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99621 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00128 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47145 * 90.00646 * 9 7 5 11 11 H 1.48500 * 109.47444 * 210.00406 * 9 7 5 12 12 H 1.48500 * 109.47494 * 330.00771 * 9 7 5 13 13 C 1.34770 * 120.00455 * 89.99805 * 3 2 1 14 14 O 1.21585 * 120.00203 * 179.72884 * 13 3 2 15 15 N 1.34779 * 120.00055 * 359.71942 * 13 3 2 16 16 C 1.39938 * 120.00205 * 174.64292 * 15 13 3 17 17 C 1.38889 * 120.07101 * 326.58215 * 16 15 13 18 18 C 1.38095 * 119.92859 * 179.76617 * 17 16 15 19 19 C 1.50696 * 119.96321 * 180.25295 * 18 17 16 20 20 C 1.38301 * 120.07141 * 0.51082 * 18 17 16 21 21 C 1.38262 * 120.13824 * 359.74673 * 20 18 17 22 22 C 1.50697 * 119.96325 * 180.02562 * 21 20 18 23 23 N 1.46902 * 109.46513 * 269.97114 * 22 21 20 24 24 C 1.38132 * 120.07070 * 359.97438 * 21 20 18 25 25 H 1.08996 * 109.47201 * 300.00393 * 1 2 3 26 26 H 1.08995 * 109.47015 * 60.00851 * 1 2 3 27 27 H 1.09004 * 109.46836 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47615 * 239.99373 * 2 1 3 29 29 H 1.09007 * 109.47059 * 119.99574 * 2 1 3 30 30 H 1.09000 * 109.47097 * 30.27629 * 4 3 2 31 31 H 1.09000 * 109.46906 * 150.27526 * 4 3 2 32 32 H 0.97006 * 119.99685 * 179.97438 * 8 7 5 33 33 H 0.97007 * 119.99744 * 354.64751 * 15 13 3 34 34 H 1.07999 * 120.03156 * 0.02562 * 17 16 15 35 35 H 1.09006 * 109.47238 * 270.25785 * 19 18 17 36 36 H 1.09001 * 109.47176 * 30.25813 * 19 18 17 37 37 H 1.09003 * 109.47073 * 150.25637 * 19 18 17 38 38 H 1.08001 * 119.93330 * 179.76619 * 20 18 17 39 39 H 1.08997 * 109.47362 * 29.96518 * 22 21 20 40 40 H 1.08997 * 109.47605 * 149.97397 * 22 21 20 41 41 H 1.00902 * 111.00215 * 180.02562 * 23 22 21 42 42 H 1.00900 * 111.00180 * 303.95390 * 23 22 21 43 43 H 1.07998 * 120.03780 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2683 2.0697 -1.2688 5 6 3.6916 1.8266 -1.7004 6 1 4.3447 1.2202 -1.0903 7 6 4.1601 2.3791 -2.8735 8 7 5.4024 2.1673 -3.2498 9 14 3.0306 3.4284 -3.9282 10 1 3.1383 4.8485 -3.5074 11 1 3.4269 3.3032 -5.3539 12 1 1.6287 2.9678 -3.7618 13 6 2.2429 2.0166 1.1671 14 8 2.6529 3.1613 1.1670 15 7 2.0129 1.3833 2.3344 16 6 2.3511 2.0006 3.5439 17 6 3.4594 2.8347 3.6135 18 6 3.7877 3.4461 4.8074 19 6 4.9867 4.3558 4.8824 20 6 3.0203 3.2203 5.9356 21 6 1.9194 2.3863 5.8708 22 6 1.0856 2.1435 7.1024 23 7 1.6146 0.9825 7.8306 24 6 1.5825 1.7762 4.6782 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.5876 1.6878 -2.0297 31 1 2.1054 3.1397 -1.1398 32 1 5.7320 2.5557 -4.0754 33 1 1.6130 0.4995 2.3360 34 1 4.0614 3.0082 2.7338 35 1 5.8697 3.7724 5.1437 36 1 5.1407 4.8345 3.9153 37 1 4.8172 5.1186 5.6424 38 1 3.2812 3.6967 6.8690 39 1 1.1223 3.0230 7.7452 40 1 0.0536 1.9497 6.8102 41 1 1.0719 0.7986 8.6611 42 1 1.6514 0.1685 7.2355 43 1 0.7222 1.1252 4.6281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424443182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:35 Heat of formation + Delta-G solvation = -1.315645 kcal Electronic energy + Delta-G solvation = -23286.532342 eV Core-core repulsion = 19945.612082 eV Total energy + Delta-G solvation = -3340.920260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38410 -38.86946 -35.80075 -35.08872 -34.53541 -32.68108 -31.64821 -30.40395 -29.62354 -27.43825 -26.81313 -25.07640 -23.22737 -22.97895 -21.17927 -20.73563 -19.14291 -17.69276 -16.98558 -16.72555 -16.03563 -15.93869 -15.45590 -14.92210 -14.74191 -14.36280 -13.92962 -13.77596 -13.58662 -13.49029 -13.33786 -12.92424 -12.63497 -12.40386 -12.28814 -12.06612 -11.92218 -11.77113 -11.48256 -11.34455 -11.04432 -11.01402 -10.81409 -10.50980 -10.21200 -9.90052 -9.58242 -9.34726 -8.98564 -8.59049 -8.43356 -7.96584 -7.61422 -6.08856 -4.07621 1.49238 1.55601 3.10163 3.29435 3.35276 3.37484 3.62201 4.03595 4.29891 4.39367 4.52738 4.71889 4.87531 5.13495 5.17712 5.23669 5.29318 5.39688 5.44316 5.45755 5.53111 5.55907 5.73067 5.78900 5.84176 5.90342 6.05491 6.10730 6.19467 6.32003 6.46948 6.55910 6.66852 6.74312 6.82950 6.86676 6.90778 7.16228 7.24326 7.33306 7.48308 7.62007 8.44157 8.47326 8.94290 9.13988 9.51397 11.04536 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.004058 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.734811 B = 6899.032979 C = 7863.655023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.602 5.602 4 C 0.231 3.769 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.701 3.299 14 O -0.567 6.567 15 N -0.695 5.695 16 C 0.185 3.815 17 C -0.118 4.118 18 C -0.067 4.067 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.069 4.069 22 C 0.106 3.894 23 N -0.845 5.845 24 C -0.158 4.158 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.141 0.859 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.033 0.967 41 H 0.340 0.660 42 H 0.342 0.658 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.374 -3.939 17.972 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.337 5.337 4 C 0.111 3.889 5 C -0.568 4.568 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.403 3.597 14 O -0.442 6.442 15 N -0.344 5.344 16 C 0.089 3.911 17 C -0.139 4.139 18 C -0.067 4.067 19 C -0.170 4.170 20 C -0.145 4.145 21 C -0.070 4.070 22 C -0.024 4.024 23 N -0.375 5.375 24 C -0.180 4.180 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.136 0.864 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.283 -2.634 17.750 20.203 hybrid contribution -1.632 -0.473 -0.964 1.954 sum -10.915 -3.107 16.786 20.262 Atomic orbital electron populations 1.22268 0.96687 1.01653 1.02433 1.21411 0.93402 0.84022 1.03039 1.47250 1.67441 1.13345 1.05652 1.19595 0.97241 0.93261 0.78848 1.21351 0.95434 1.32858 1.07137 0.90759 1.24845 0.94987 0.95796 0.97348 1.69903 1.15010 1.45002 1.23639 0.86858 0.81388 0.81687 0.79773 1.19877 1.21087 1.19093 1.15879 0.79096 0.84677 0.80071 1.90907 1.51189 1.16577 1.85568 1.42942 1.66748 1.20952 1.03775 1.17451 0.93311 0.95754 0.84629 1.21233 0.96028 0.98190 0.98434 1.19781 0.96885 0.97363 0.92715 1.20785 0.95309 0.97971 1.02958 1.20733 0.95643 1.00366 0.97708 1.19344 0.96556 0.97597 0.93475 1.20645 0.94419 0.94647 0.92726 1.58714 1.59848 1.08230 1.10741 1.20584 1.00325 1.04613 0.92482 0.93082 0.91944 0.91847 0.89214 0.92026 0.95098 0.94443 0.92566 0.76252 0.84157 0.91210 0.91113 0.91747 0.86370 0.90272 0.94860 0.84747 0.84510 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.11 1.60 5.84 -4.04 -0.02 1.58 16 3 N -0.60 -12.33 2.46 -180.80 -0.44 -12.78 16 4 C 0.23 5.62 4.23 -5.19 -0.02 5.60 16 5 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 6 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 9 Si 0.88 21.52 27.47 -169.99 -4.67 16.86 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 13 C 0.70 14.73 8.01 -86.92 -0.70 14.03 16 14 O -0.57 -14.24 13.62 5.29 0.07 -14.17 16 15 N -0.70 -11.37 5.17 -14.23 -0.07 -11.44 16 16 C 0.18 2.98 6.28 -83.69 -0.53 2.46 16 17 C -0.12 -2.07 8.31 -39.39 -0.33 -2.40 16 18 C -0.07 -0.99 5.88 -104.65 -0.62 -1.60 16 19 C -0.11 -1.42 10.01 36.00 0.36 -1.06 16 20 C -0.12 -1.62 9.35 -39.55 -0.37 -1.99 16 21 C -0.07 -0.83 5.39 -104.65 -0.56 -1.40 16 22 C 0.11 0.97 6.91 -4.98 -0.03 0.93 16 23 N -0.85 -6.96 9.61 -11.41 -0.11 -7.07 16 24 C -0.16 -2.06 9.62 -39.39 -0.38 -2.44 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.42 8.07 -51.93 -0.42 1.01 16 29 H 0.06 0.79 6.46 -51.93 -0.34 0.45 16 30 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 31 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.40 5.20 6.64 -40.82 -0.27 4.93 16 34 H 0.14 2.90 6.42 -52.49 -0.34 2.57 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 37 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.03 0.27 8.08 -51.93 -0.42 -0.15 16 41 H 0.34 2.02 9.08 -39.29 -0.36 1.67 16 42 H 0.34 2.67 8.99 -39.29 -0.35 2.31 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -34.41 355.52 -8.95 -43.36 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.60 Total: 8.21 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -3.26 Total: -1.47 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.15 Total: -58.15 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.07 Total: -14.17 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.41 -8.95 -43.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424443182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.045 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds