Wall clock time and date at job start Tue Mar 31 2020 06:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47081 * 2 1 4 4 C 1.46504 * 119.99591 * 269.72064 * 3 2 1 5 5 C 1.50701 * 109.47121 * 270.27733 * 4 3 2 6 6 H 1.08002 * 120.00059 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99767 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99621 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00128 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47145 * 90.00646 * 9 7 5 11 11 H 1.48500 * 109.47444 * 210.00406 * 9 7 5 12 12 H 1.48500 * 109.47494 * 330.00771 * 9 7 5 13 13 C 1.34770 * 120.00455 * 89.99805 * 3 2 1 14 14 O 1.21585 * 120.00203 * 179.72884 * 13 3 2 15 15 N 1.34779 * 120.00055 * 359.71942 * 13 3 2 16 16 C 1.39938 * 120.00205 * 174.64292 * 15 13 3 17 17 C 1.38889 * 120.07101 * 326.58215 * 16 15 13 18 18 C 1.38095 * 119.92859 * 179.76617 * 17 16 15 19 19 C 1.50696 * 119.96321 * 180.25295 * 18 17 16 20 20 C 1.38301 * 120.07141 * 0.51082 * 18 17 16 21 21 C 1.38262 * 120.13824 * 359.74673 * 20 18 17 22 22 C 1.50697 * 119.96325 * 180.02562 * 21 20 18 23 23 N 1.46902 * 109.46513 * 269.97114 * 22 21 20 24 24 C 1.38132 * 120.07070 * 359.97438 * 21 20 18 25 25 H 1.08996 * 109.47201 * 300.00393 * 1 2 3 26 26 H 1.08995 * 109.47015 * 60.00851 * 1 2 3 27 27 H 1.09004 * 109.46836 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47615 * 239.99373 * 2 1 3 29 29 H 1.09007 * 109.47059 * 119.99574 * 2 1 3 30 30 H 1.09000 * 109.47097 * 30.27629 * 4 3 2 31 31 H 1.09000 * 109.46906 * 150.27526 * 4 3 2 32 32 H 0.97006 * 119.99685 * 179.97438 * 8 7 5 33 33 H 0.97007 * 119.99744 * 354.64751 * 15 13 3 34 34 H 1.07999 * 120.03156 * 0.02562 * 17 16 15 35 35 H 1.09006 * 109.47238 * 270.25785 * 19 18 17 36 36 H 1.09001 * 109.47176 * 30.25813 * 19 18 17 37 37 H 1.09003 * 109.47073 * 150.25637 * 19 18 17 38 38 H 1.08001 * 119.93330 * 179.76619 * 20 18 17 39 39 H 1.08997 * 109.47362 * 29.96518 * 22 21 20 40 40 H 1.08997 * 109.47605 * 149.97397 * 22 21 20 41 41 H 1.00902 * 111.00215 * 180.02562 * 23 22 21 42 42 H 1.00900 * 111.00180 * 303.95390 * 23 22 21 43 43 H 1.07998 * 120.03780 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2683 2.0697 -1.2688 5 6 3.6916 1.8266 -1.7004 6 1 4.3447 1.2202 -1.0903 7 6 4.1601 2.3791 -2.8735 8 7 5.4024 2.1673 -3.2498 9 14 3.0306 3.4284 -3.9282 10 1 3.1383 4.8485 -3.5074 11 1 3.4269 3.3032 -5.3539 12 1 1.6287 2.9678 -3.7618 13 6 2.2429 2.0166 1.1671 14 8 2.6529 3.1613 1.1670 15 7 2.0129 1.3833 2.3344 16 6 2.3511 2.0006 3.5439 17 6 3.4594 2.8347 3.6135 18 6 3.7877 3.4461 4.8074 19 6 4.9867 4.3558 4.8824 20 6 3.0203 3.2203 5.9356 21 6 1.9194 2.3863 5.8708 22 6 1.0856 2.1435 7.1024 23 7 1.6146 0.9825 7.8306 24 6 1.5825 1.7762 4.6782 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.5876 1.6878 -2.0297 31 1 2.1054 3.1397 -1.1398 32 1 5.7320 2.5557 -4.0754 33 1 1.6130 0.4995 2.3360 34 1 4.0614 3.0082 2.7338 35 1 5.8697 3.7724 5.1437 36 1 5.1407 4.8345 3.9153 37 1 4.8172 5.1186 5.6424 38 1 3.2812 3.6967 6.8690 39 1 1.1223 3.0230 7.7452 40 1 0.0536 1.9497 6.8102 41 1 1.0719 0.7986 8.6611 42 1 1.6514 0.1685 7.2355 43 1 0.7222 1.1252 4.6281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424443182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:34 Heat of formation + Delta-G solvation = -26.091963 kcal Electronic energy + Delta-G solvation = -23287.606723 eV Core-core repulsion = 19945.612082 eV Total energy + Delta-G solvation = -3341.994642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79813 -40.12888 -37.25315 -36.32693 -35.69107 -34.77601 -32.68845 -31.88158 -30.86237 -29.19113 -27.89936 -25.94668 -24.87815 -24.40252 -22.57338 -21.85857 -20.53405 -19.22074 -19.04582 -18.03698 -17.26349 -16.91697 -16.66749 -16.45804 -16.07212 -15.64536 -15.34244 -15.22511 -14.82513 -14.57643 -14.44173 -14.40846 -13.94471 -13.86366 -13.51397 -13.40622 -13.20564 -12.96682 -12.84742 -12.63068 -12.44405 -12.40821 -12.10712 -12.06783 -11.99386 -11.75613 -11.25139 -11.00154 -10.83783 -9.69617 -9.57074 -9.44487 -8.94113 -8.34802 -6.40026 0.38316 0.40205 1.31491 1.36629 1.44415 1.66050 2.13477 2.30196 2.83128 2.92814 3.00813 3.75499 3.86749 3.97831 4.01189 4.22296 4.29337 4.32386 4.40256 4.47147 4.49562 4.61723 4.70323 4.73882 4.77902 4.79619 4.92853 4.94426 4.95106 4.97053 5.17738 5.32753 5.37607 5.44377 5.46084 5.58122 5.64166 5.73078 5.99496 6.12845 6.25278 6.26338 6.60979 6.66464 6.97109 7.21637 7.56360 8.82369 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.004058 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.734811 B = 6899.032979 C = 7863.655023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.610 5.610 4 C 0.243 3.757 5 C -0.537 4.537 6 H 0.025 0.975 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.949 3.051 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.236 1.236 13 C 0.694 3.306 14 O -0.619 6.619 15 N -0.676 5.676 16 C 0.160 3.840 17 C -0.153 4.153 18 C -0.076 4.076 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.062 4.062 22 C 0.110 3.890 23 N -0.853 5.853 24 C -0.146 4.146 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.268 0.732 33 H 0.418 0.582 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.143 0.857 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.355 0.645 42 H 0.345 0.655 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 -4.719 20.041 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.344 5.344 4 C 0.120 3.880 5 C -0.575 4.575 6 H 0.044 0.956 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.199 1.199 12 H -0.159 1.159 13 C 0.396 3.604 14 O -0.498 6.498 15 N -0.326 5.326 16 C 0.064 3.936 17 C -0.174 4.174 18 C -0.077 4.077 19 C -0.169 4.169 20 C -0.142 4.142 21 C -0.063 4.063 22 C -0.020 4.020 23 N -0.385 5.385 24 C -0.167 4.167 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.258 0.742 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.161 0.839 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.169 0.831 42 H 0.158 0.842 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.590 -3.495 19.876 23.786 hybrid contribution -0.520 -0.294 -1.441 1.560 sum -13.110 -3.788 18.435 22.936 Atomic orbital electron populations 1.22176 0.93581 1.03891 1.02206 1.21758 0.95853 0.81094 1.03842 1.47240 1.67590 1.15198 1.04335 1.19234 0.94783 0.92798 0.81160 1.21572 0.97194 1.32081 1.06688 0.95614 1.25851 0.96712 0.97162 0.98955 1.70059 1.17338 1.46588 1.24579 0.85708 0.80530 0.78901 0.77750 1.20354 1.19887 1.15874 1.16115 0.78696 0.84316 0.81232 1.90868 1.53356 1.19098 1.86512 1.42595 1.66110 1.21340 1.02572 1.17705 0.93931 0.96621 0.85305 1.21059 0.97315 1.00975 0.98090 1.20003 0.97858 0.97372 0.92436 1.20816 0.95123 0.98365 1.02625 1.21049 0.95299 1.00129 0.97695 1.19796 0.96068 0.95979 0.94451 1.20642 0.94441 0.95539 0.91411 1.58664 1.60376 1.08116 1.11336 1.20851 1.00298 1.04275 0.91281 0.92411 0.93068 0.88282 0.90166 0.89617 0.92754 0.96384 0.92255 0.74189 0.88890 0.90259 0.93283 0.89135 0.83913 0.89268 0.93192 0.83066 0.84181 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 10.24 71.98 0.74 -2.71 16 2 C 0.10 2.84 5.84 86.38 0.50 3.34 16 3 N -0.61 -25.43 2.46 -844.18 -2.07 -27.50 16 4 C 0.24 12.04 4.23 85.63 0.36 12.40 16 5 C -0.54 -32.19 9.94 25.60 0.25 -31.93 16 6 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 7 C 0.01 0.67 5.47 84.65 0.46 1.13 16 8 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 9 Si 0.95 44.96 27.47 68.60 1.88 46.84 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 13 C 0.69 30.30 8.01 179.06 1.44 31.74 16 14 O -0.62 -33.18 13.62 -3.98 -0.05 -33.24 16 15 N -0.68 -22.17 5.17 -317.18 -1.64 -23.81 16 16 C 0.16 5.17 6.28 38.15 0.24 5.41 16 17 C -0.15 -5.72 8.31 22.39 0.19 -5.54 16 18 C -0.08 -2.28 5.88 -19.88 -0.12 -2.39 16 19 C -0.11 -2.89 10.01 71.23 0.71 -2.18 16 20 C -0.12 -2.94 9.35 22.29 0.21 -2.73 16 21 C -0.06 -1.32 5.39 -19.88 -0.11 -1.43 16 22 C 0.11 1.55 6.91 85.56 0.59 2.14 16 23 N -0.85 -10.79 9.61 -190.01 -1.83 -12.62 16 24 C -0.15 -3.45 9.62 22.39 0.22 -3.23 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 29 H 0.09 2.06 6.46 -2.38 -0.02 2.04 16 30 H 0.05 2.44 7.13 -2.39 -0.02 2.42 16 31 H 0.02 0.97 6.85 -2.39 -0.02 0.95 16 32 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 33 H 0.42 10.21 6.64 -92.70 -0.62 9.59 16 34 H 0.09 4.32 6.42 -2.91 -0.02 4.30 16 35 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.05 1.44 8.09 -2.39 -0.02 1.42 16 37 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 38 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.09 1.13 8.08 -2.39 -0.02 1.11 16 40 H 0.05 0.58 8.08 -2.39 -0.02 0.56 16 41 H 0.35 2.85 9.08 -89.69 -0.81 2.04 16 42 H 0.35 4.12 8.99 -89.69 -0.81 3.31 16 43 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -81.50 355.52 1.02 -80.48 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -1.25 Total: 26.15 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 5.69 Total: 4.03 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -5.24 Total: -124.26 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.05 Total: -33.24 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -81.50 1.02 -80.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424443182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.386 kcal (2) G-P(sol) polarization free energy of solvation -81.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds