Wall clock time and date at job start Tue Mar 31 2020 07:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34259 * 125.75484 * 2 1 4 4 C 1.38049 * 107.41597 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.41465 * 179.97438 * 4 3 2 6 6 O 1.21603 * 120.00000 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99743 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46940 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00043 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00213 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00116 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00201 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47136 * 90.00100 * 15 13 11 17 17 H 1.48499 * 109.47548 * 209.99879 * 15 13 11 18 18 H 1.48499 * 109.47078 * 330.00388 * 15 13 11 19 19 C 1.41292 * 107.16918 * 0.23255 * 4 3 2 20 20 C 1.50699 * 125.98838 * 179.74107 * 19 4 3 21 21 C 1.53785 * 113.61368 * 219.13759 * 20 19 4 22 22 C 1.53955 * 87.01649 * 220.04640 * 21 20 19 23 23 C 1.53774 * 113.61855 * 121.52505 * 20 19 4 24 24 N 1.30447 * 108.02271 * 359.61324 * 19 4 3 25 25 H 1.09000 * 109.47394 * 89.99335 * 1 2 3 26 26 H 1.08997 * 109.47440 * 209.99730 * 1 2 3 27 27 H 1.09007 * 109.46953 * 329.99660 * 1 2 3 28 28 H 1.07999 * 126.29421 * 0.02562 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 30 30 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 31 31 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 32 32 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 33 33 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 34 34 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 35 35 H 1.09007 * 109.47288 * 60.00489 * 10 9 8 36 36 H 0.97000 * 120.00572 * 179.97438 * 14 13 11 37 37 H 1.09007 * 112.84757 * 350.32873 * 20 19 4 38 38 H 1.09000 * 113.60877 * 334.56103 * 21 20 19 39 39 H 1.08993 * 113.61517 * 105.46569 * 21 20 19 40 40 H 1.09006 * 113.53618 * 270.81142 * 22 21 20 41 41 H 1.09000 * 113.74407 * 139.94451 * 22 21 20 42 42 H 1.08999 * 113.61658 * 254.53453 * 23 20 19 43 43 H 1.09007 * 113.61392 * 25.43087 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6552 -0.0006 5 6 4.7639 1.5060 -0.0013 6 8 5.8682 0.9968 -0.0023 7 7 4.6406 2.8481 -0.0010 8 6 5.8370 3.6935 0.0044 9 6 5.4210 5.1659 0.0107 10 6 6.6706 6.0488 0.0169 11 6 6.2609 7.4990 0.0225 12 1 5.2140 7.7645 0.0221 13 6 7.2225 8.4871 0.0281 14 7 8.4973 8.1640 0.0281 15 14 6.7146 10.2847 0.0357 16 1 6.5785 10.7547 1.4378 17 1 7.7477 11.0940 -0.6594 18 1 5.4140 10.4346 -0.6651 19 6 3.5310 -0.7574 -0.0064 20 6 4.7321 -1.6676 -0.0146 21 6 4.5597 -2.9070 -0.9086 22 6 5.2757 -3.7044 0.1967 23 6 4.7824 -2.6319 1.1822 24 7 2.2826 -1.1356 -0.0008 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9166 2.1170 0.0004 29 1 3.7597 3.2543 0.0002 30 1 6.4292 3.4795 0.8942 31 1 6.4314 3.4877 -0.8858 32 1 4.8289 5.3799 -0.8790 33 1 4.8267 5.3718 0.9010 34 1 7.2623 5.8347 0.9069 35 1 7.2653 5.8431 -0.8731 36 1 9.1739 8.8591 0.0317 37 1 5.6669 -1.1334 -0.1845 38 1 3.5197 -3.1992 -1.0538 39 1 5.1196 -2.8533 -1.8421 40 1 6.3596 -3.7281 0.0837 41 1 4.8470 -4.6908 0.3741 42 1 5.5220 -2.3565 1.9341 43 1 3.8034 -2.8489 1.6096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425164207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:37 Heat of formation + Delta-G solvation = 38.727156 kcal Electronic energy + Delta-G solvation = -22386.830751 eV Core-core repulsion = 19047.646877 eV Total energy + Delta-G solvation = -3339.183874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.64344 -38.92024 -38.52489 -35.32338 -33.48758 -33.30398 -31.50284 -30.21855 -28.09167 -26.75689 -25.65969 -25.20167 -23.35128 -22.21910 -20.87117 -20.64649 -19.69061 -18.91371 -17.72572 -16.36565 -16.15127 -15.93013 -15.52121 -15.30378 -15.07115 -15.02242 -14.45381 -13.83675 -13.80120 -13.40705 -13.15963 -13.00955 -12.54444 -12.50713 -12.27315 -12.16118 -11.81171 -11.66618 -11.21681 -10.90425 -10.80025 -10.71591 -10.59008 -10.56506 -10.40765 -9.85164 -9.74074 -9.47072 -9.32449 -9.10507 -8.89788 -8.57664 -8.36949 -6.01522 -4.04643 1.36331 2.06467 2.11711 3.30454 3.36864 3.39215 3.54835 3.59239 4.10261 4.35686 4.44282 4.57146 4.59622 4.64810 4.73746 4.91639 4.94222 5.00700 5.17494 5.34220 5.35676 5.39143 5.61517 5.69715 5.79695 5.80877 5.82008 5.83632 5.91240 6.13381 6.19625 6.30845 6.45935 6.55429 6.61828 6.62794 6.88174 7.02977 7.43139 7.64385 7.77582 7.83350 7.97502 8.38198 8.53657 9.02120 9.59459 11.09789 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.002708 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.587416 B =10336.247792 C =11387.627436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.364 5.364 3 C 0.096 3.904 4 C -0.281 4.281 5 C 0.588 3.412 6 O -0.545 6.545 7 N -0.725 5.725 8 C 0.118 3.882 9 C -0.120 4.120 10 C 0.023 3.977 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.145 3.855 20 C -0.043 4.043 21 C -0.130 4.130 22 C -0.140 4.140 23 C -0.126 4.126 24 N -0.300 5.300 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.183 0.817 29 H 0.393 0.607 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.232 -20.358 0.099 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.142 5.142 3 C -0.056 4.056 4 C -0.296 4.296 5 C 0.375 3.625 6 O -0.423 6.423 7 N -0.375 5.375 8 C -0.004 4.004 9 C -0.158 4.158 10 C -0.014 4.014 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.022 4.022 20 C -0.063 4.063 21 C -0.168 4.168 22 C -0.178 4.178 23 C -0.164 4.164 24 N -0.121 5.121 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.200 0.800 29 H 0.227 0.773 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.239 -21.614 0.095 27.035 hybrid contribution -0.365 2.215 0.010 2.245 sum -16.604 -19.399 0.105 25.535 Atomic orbital electron populations 1.21966 0.73644 1.04885 1.03799 1.48277 1.06979 1.03857 1.55110 1.23104 0.90542 0.93772 0.98140 1.20388 0.92711 0.94180 1.22307 1.17253 0.87517 0.81676 0.76031 1.90702 1.26883 1.73653 1.51079 1.46037 1.10510 1.05634 1.75334 1.21630 0.86254 0.90471 1.02070 1.21884 1.01657 0.91561 1.00745 1.19029 0.91418 0.93269 0.97694 1.21204 0.92735 0.91202 1.50921 0.92693 1.25029 0.94966 0.99166 0.95309 1.69962 0.99640 1.33099 1.50548 0.86590 0.78242 0.85038 0.78083 1.20671 1.21204 1.19930 1.22224 0.92880 0.92130 0.94969 1.21428 0.94660 0.92225 0.98023 1.22979 1.01301 0.95101 0.97381 1.22828 1.00563 0.97743 0.96621 1.22899 1.01758 0.95527 0.96225 1.77087 1.01344 1.07042 1.26585 0.90307 0.88991 0.89064 0.80002 0.77338 0.91714 0.91705 0.92799 0.92814 0.96247 0.96236 0.92916 0.84964 0.89745 0.91266 0.89901 0.91423 0.91040 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.44 59.85 0.68 1.16 16 2 N -0.36 -3.52 3.98 -67.60 -0.27 -3.79 16 3 C 0.10 0.94 10.99 -16.56 -0.18 0.76 16 4 C -0.28 -3.77 6.13 -105.07 -0.64 -4.42 16 5 C 0.59 9.35 7.81 -12.52 -0.10 9.25 16 6 O -0.54 -10.41 14.70 5.27 0.08 -10.34 16 7 N -0.73 -10.58 5.54 -61.38 -0.34 -10.92 16 8 C 0.12 2.09 5.67 -4.04 -0.02 2.07 16 9 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 15 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.15 1.96 6.31 -82.02 -0.52 1.45 16 20 C -0.04 -0.55 3.96 -90.96 -0.36 -0.91 16 21 C -0.13 -1.36 7.63 -25.83 -0.20 -1.56 16 22 C -0.14 -1.29 8.09 -25.83 -0.21 -1.50 16 23 C -0.13 -1.36 7.63 -25.92 -0.20 -1.56 16 24 N -0.30 -3.74 12.13 33.90 0.41 -3.33 16 25 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.18 1.07 7.46 -52.49 -0.39 0.68 16 29 H 0.39 4.47 7.40 -40.82 -0.30 4.17 16 30 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.13 1.93 6.00 -51.92 -0.31 1.62 16 38 H 0.08 0.90 7.80 -51.93 -0.40 0.50 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.88 8.09 -51.92 -0.42 0.46 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -34.46 359.62 -8.29 -42.75 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.87 Total: 0.48 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.43 Total: -10.59 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.54 Total: -44.09 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.46 -8.29 -42.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425164207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.479 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds