Wall clock time and date at job start Tue Mar 31 2020 07:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34259 * 125.75484 * 2 1 4 4 C 1.38049 * 107.41597 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.41465 * 179.97438 * 4 3 2 6 6 O 1.21603 * 120.00000 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99743 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46940 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00043 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00213 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00116 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00201 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47136 * 90.00100 * 15 13 11 17 17 H 1.48499 * 109.47548 * 209.99879 * 15 13 11 18 18 H 1.48499 * 109.47078 * 330.00388 * 15 13 11 19 19 C 1.41292 * 107.16918 * 0.23255 * 4 3 2 20 20 C 1.50699 * 125.98838 * 179.74107 * 19 4 3 21 21 C 1.53785 * 113.61368 * 219.13759 * 20 19 4 22 22 C 1.53955 * 87.01649 * 220.04640 * 21 20 19 23 23 C 1.53774 * 113.61855 * 121.52505 * 20 19 4 24 24 N 1.30447 * 108.02271 * 359.61324 * 19 4 3 25 25 H 1.09000 * 109.47394 * 89.99335 * 1 2 3 26 26 H 1.08997 * 109.47440 * 209.99730 * 1 2 3 27 27 H 1.09007 * 109.46953 * 329.99660 * 1 2 3 28 28 H 1.07999 * 126.29421 * 0.02562 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 30 30 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 31 31 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 32 32 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 33 33 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 34 34 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 35 35 H 1.09007 * 109.47288 * 60.00489 * 10 9 8 36 36 H 0.97000 * 120.00572 * 179.97438 * 14 13 11 37 37 H 1.09007 * 112.84757 * 350.32873 * 20 19 4 38 38 H 1.09000 * 113.60877 * 334.56103 * 21 20 19 39 39 H 1.08993 * 113.61517 * 105.46569 * 21 20 19 40 40 H 1.09006 * 113.53618 * 270.81142 * 22 21 20 41 41 H 1.09000 * 113.74407 * 139.94451 * 22 21 20 42 42 H 1.08999 * 113.61658 * 254.53453 * 23 20 19 43 43 H 1.09007 * 113.61392 * 25.43087 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6552 -0.0006 5 6 4.7639 1.5060 -0.0013 6 8 5.8682 0.9968 -0.0023 7 7 4.6406 2.8481 -0.0010 8 6 5.8370 3.6935 0.0044 9 6 5.4210 5.1659 0.0107 10 6 6.6706 6.0488 0.0169 11 6 6.2609 7.4990 0.0225 12 1 5.2140 7.7645 0.0221 13 6 7.2225 8.4871 0.0281 14 7 8.4973 8.1640 0.0281 15 14 6.7146 10.2847 0.0357 16 1 6.5785 10.7547 1.4378 17 1 7.7477 11.0940 -0.6594 18 1 5.4140 10.4346 -0.6651 19 6 3.5310 -0.7574 -0.0064 20 6 4.7321 -1.6676 -0.0146 21 6 4.5597 -2.9070 -0.9086 22 6 5.2757 -3.7044 0.1967 23 6 4.7824 -2.6319 1.1822 24 7 2.2826 -1.1356 -0.0008 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9166 2.1170 0.0004 29 1 3.7597 3.2543 0.0002 30 1 6.4292 3.4795 0.8942 31 1 6.4314 3.4877 -0.8858 32 1 4.8289 5.3799 -0.8790 33 1 4.8267 5.3718 0.9010 34 1 7.2623 5.8347 0.9069 35 1 7.2653 5.8431 -0.8731 36 1 9.1739 8.8591 0.0317 37 1 5.6669 -1.1334 -0.1845 38 1 3.5197 -3.1992 -1.0538 39 1 5.1196 -2.8533 -1.8421 40 1 6.3596 -3.7281 0.0837 41 1 4.8470 -4.6908 0.3741 42 1 5.5220 -2.3565 1.9341 43 1 3.8034 -2.8489 1.6096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425164207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:36 Heat of formation + Delta-G solvation = 16.277003 kcal Electronic energy + Delta-G solvation = -22387.804263 eV Core-core repulsion = 19047.646877 eV Total energy + Delta-G solvation = -3340.157386 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.51233 -40.17105 -39.37176 -36.88598 -35.16228 -34.21188 -33.15465 -31.34871 -28.84043 -28.42659 -26.51453 -26.19016 -24.93157 -23.28311 -22.29639 -21.78115 -20.85033 -19.79514 -18.78429 -18.38216 -17.17377 -16.82194 -16.61014 -16.37728 -16.33358 -16.31008 -15.89108 -15.16364 -14.98426 -14.28704 -14.18905 -13.94428 -13.70652 -13.61213 -13.44527 -13.36328 -13.31315 -12.87588 -12.72907 -12.52358 -12.35241 -12.08660 -11.67257 -11.63899 -11.53840 -11.39350 -11.30266 -11.18396 -10.67989 -10.53676 -10.30526 -10.11706 -9.58374 -8.17648 -6.29142 0.52761 1.06891 1.42913 1.44361 1.46216 1.55207 2.30512 2.45047 2.45199 3.16213 3.33071 3.60027 3.81000 3.83274 3.91389 4.04860 4.14156 4.24164 4.26277 4.34555 4.44458 4.49592 4.58716 4.61828 4.72883 4.78917 4.83953 4.93137 4.98586 5.05212 5.05931 5.07367 5.20460 5.28709 5.40511 5.47877 5.55814 5.63034 5.73882 5.86615 5.91784 6.24208 6.52582 6.72338 6.88965 7.35331 7.40537 8.94596 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.002708 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.587416 B =10336.247792 C =11387.627436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.357 5.357 3 C 0.122 3.878 4 C -0.320 4.320 5 C 0.587 3.413 6 O -0.588 6.588 7 N -0.711 5.711 8 C 0.132 3.868 9 C -0.100 4.100 10 C 0.023 3.977 11 C -0.539 4.539 12 H 0.068 0.932 13 C -0.005 4.005 14 N -0.936 5.936 15 Si 0.967 3.033 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.259 1.259 19 C 0.130 3.870 20 C -0.057 4.057 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.123 4.123 24 N -0.318 5.318 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.124 0.876 28 H 0.227 0.773 29 H 0.413 0.587 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.070 0.930 34 H -0.009 1.009 35 H -0.009 1.009 36 H 0.263 0.737 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.717 -19.781 0.123 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.134 5.134 3 C -0.031 4.031 4 C -0.335 4.335 5 C 0.376 3.624 6 O -0.470 6.470 7 N -0.363 5.363 8 C 0.008 3.992 9 C -0.138 4.138 10 C -0.015 4.015 11 C -0.577 4.577 12 H 0.086 0.914 13 C -0.202 4.202 14 N -0.577 5.577 15 Si 0.792 3.208 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.183 1.183 19 C -0.037 4.037 20 C -0.077 4.077 21 C -0.162 4.162 22 C -0.166 4.166 23 C -0.161 4.161 24 N -0.139 5.139 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.142 0.858 28 H 0.244 0.756 29 H 0.249 0.751 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.009 0.991 35 H 0.010 0.990 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.799 -21.054 0.119 28.902 hybrid contribution 0.638 2.008 0.000 2.107 sum -19.161 -19.046 0.119 27.017 Atomic orbital electron populations 1.22432 0.70612 1.06770 1.05424 1.48722 1.08560 1.03085 1.53054 1.23648 0.89061 0.95491 0.94900 1.20255 0.93201 0.93960 1.26087 1.17646 0.87899 0.81873 0.74963 1.90682 1.28809 1.74407 1.53074 1.45727 1.10374 1.05079 1.75112 1.21213 0.87209 0.90166 1.00580 1.21587 0.98948 0.91027 1.02226 1.18950 0.93436 0.94112 0.95008 1.21692 0.93434 0.92313 1.50279 0.91365 1.26037 0.94877 1.04453 0.94856 1.70116 1.01013 1.34754 1.51795 0.85414 0.78300 0.78682 0.78437 1.19845 1.21186 1.18286 1.22342 0.93432 0.92486 0.95423 1.21390 0.93706 0.92844 0.99772 1.22933 1.01448 0.94267 0.97514 1.22801 1.00821 0.97970 0.95007 1.22869 1.01676 0.95693 0.95879 1.77030 1.01090 1.08567 1.27207 0.88750 0.88606 0.85792 0.75637 0.75065 0.93383 0.93369 0.91190 0.91181 0.99057 0.99049 0.92855 0.87705 0.89732 0.91218 0.89427 0.89655 0.91573 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 11.44 127.77 1.46 1.96 16 2 N -0.36 -5.87 3.98 -367.77 -1.46 -7.34 16 3 C 0.12 2.03 10.99 84.28 0.93 2.95 16 4 C -0.32 -8.36 6.13 -20.15 -0.12 -8.49 16 5 C 0.59 18.85 7.81 86.66 0.68 19.52 16 6 O -0.59 -23.72 14.70 -4.04 -0.06 -23.78 16 7 N -0.71 -20.11 5.54 -466.36 -2.59 -22.70 16 8 C 0.13 4.74 5.67 86.38 0.49 5.23 16 9 C -0.10 -3.79 5.27 30.59 0.16 -3.63 16 10 C 0.02 1.17 4.97 29.85 0.15 1.32 16 11 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 12 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 13 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 14 N -0.94 -57.32 13.29 21.45 0.28 -57.04 16 15 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 19 C 0.13 3.51 6.31 43.52 0.27 3.79 16 20 C -0.06 -1.50 3.96 -11.01 -0.04 -1.54 16 21 C -0.12 -2.62 7.63 31.18 0.24 -2.38 16 22 C -0.13 -2.32 8.09 31.18 0.25 -2.07 16 23 C -0.12 -2.71 7.63 31.12 0.24 -2.47 16 24 N -0.32 -7.53 12.13 -46.68 -0.57 -8.10 16 25 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.12 -0.05 8.14 -2.38 -0.02 -0.07 16 28 H 0.23 1.49 7.46 -2.91 -0.02 1.47 16 29 H 0.41 8.23 7.40 -92.71 -0.69 7.55 16 30 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 34 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H -0.01 -0.51 8.14 -2.38 -0.02 -0.52 16 36 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.10 3.34 6.00 -2.38 -0.01 3.33 16 38 H 0.08 1.78 7.80 -2.39 -0.02 1.76 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.49 8.14 -2.38 -0.02 1.48 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 1.76 8.09 -2.38 -0.02 1.74 16 Total: -1.00 -77.88 359.62 3.35 -74.53 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.32 Total: 14.13 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 5.40 Total: -15.22 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -4.33 Total: -95.17 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.06 Total: -23.78 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -77.88 3.35 -74.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425164207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.811 kcal (2) G-P(sol) polarization free energy of solvation -77.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds