Wall clock time and date at job start Tue Mar 31 2020 07:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99966 * 2 1 4 4 C 1.39675 * 119.99622 * 179.72113 * 2 1 3 5 5 C 1.38929 * 120.07054 * 179.72210 * 4 2 1 6 6 C 1.38084 * 119.92537 * 179.74921 * 5 4 2 7 7 C 1.38311 * 120.07133 * 0.52814 * 6 5 4 8 8 C 1.38266 * 120.14967 * 359.74758 * 7 6 5 9 9 C 1.50699 * 119.96374 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47046 * 269.98230 * 9 8 7 11 11 C 1.46507 * 119.99731 * 269.99486 * 10 9 8 12 12 C 1.34779 * 120.00196 * 89.99919 * 10 9 8 13 13 O 1.21581 * 120.00001 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99544 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99589 * 179.97438 * 14 12 10 16 16 C 1.50700 * 109.47239 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99538 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00030 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00117 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99819 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46772 * 59.99798 * 20 18 16 22 22 H 1.48501 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47125 * 299.99762 * 20 18 16 24 24 C 1.38130 * 120.07589 * 359.97438 * 8 7 6 25 25 H 1.09001 * 109.47091 * 270.28179 * 1 2 3 26 26 H 1.09004 * 109.46622 * 30.27737 * 1 2 3 27 27 H 1.08997 * 109.47201 * 150.27440 * 1 2 3 28 28 H 1.09009 * 109.46732 * 269.72379 * 3 2 1 29 29 H 1.08998 * 109.47268 * 29.71742 * 3 2 1 30 30 H 1.08996 * 109.47244 * 149.72315 * 3 2 1 31 31 H 1.08000 * 120.04161 * 0.02562 * 5 4 2 32 32 H 1.07994 * 119.96784 * 180.25745 * 6 5 4 33 33 H 1.08002 * 119.92832 * 179.76921 * 7 6 5 34 34 H 1.09001 * 109.46931 * 29.97680 * 9 8 7 35 35 H 1.08994 * 109.47413 * 149.97867 * 9 8 7 36 36 H 1.09001 * 109.46733 * 90.00112 * 11 10 9 37 37 H 1.08996 * 109.47078 * 209.99814 * 11 10 9 38 38 H 1.09003 * 109.47247 * 330.00413 * 11 10 9 39 39 H 0.96994 * 120.00398 * 0.02562 * 14 12 10 40 40 H 1.09000 * 109.47391 * 300.00234 * 15 14 12 41 41 H 1.09000 * 109.47027 * 60.00258 * 15 14 12 42 42 H 0.96994 * 120.00244 * 180.02562 * 19 18 16 43 43 H 1.07994 * 120.03672 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1634 -1.2097 0.0059 5 6 3.5526 -1.2115 0.0001 6 6 4.2400 -2.4091 0.0111 7 6 3.5468 -3.6059 0.0170 8 6 2.1642 -3.6077 0.0170 9 6 1.4132 -4.9142 0.0228 10 7 1.1694 -5.3435 -1.3565 11 6 -0.0525 -4.9259 -2.0485 12 6 2.0692 -6.1226 -1.9888 13 8 3.0831 -6.4696 -1.4144 14 7 1.8446 -6.5179 -3.2576 15 6 2.8229 -7.3643 -3.9452 16 6 2.3376 -7.6612 -5.3406 17 1 1.3945 -7.2600 -5.6811 18 6 3.0971 -8.4461 -6.1822 19 7 4.2453 -8.9351 -5.7674 20 14 2.4950 -8.8148 -7.9118 21 1 2.3292 -7.5426 -8.6598 22 1 3.4868 -9.6726 -8.6087 23 1 1.1909 -9.5216 -7.8418 24 6 1.4704 -2.4133 0.0118 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8924 -0.5095 28 1 2.3835 1.5809 -1.0278 29 1 1.6063 2.0296 0.5094 30 1 3.1478 1.1397 0.5181 31 1 4.0945 -0.2773 -0.0086 32 1 5.3199 -2.4112 0.0108 33 1 4.0868 -4.5413 0.0219 34 1 2.0039 -5.6706 0.5397 35 1 0.4607 -4.7836 0.5364 36 1 0.1272 -3.9838 -2.5664 37 1 -0.3393 -5.6891 -2.7718 38 1 -0.8545 -4.7940 -1.3221 39 1 1.0356 -6.2413 -3.7158 40 1 3.7800 -6.8452 -3.9965 41 1 2.9450 -8.2980 -3.3962 42 1 4.7797 -9.4869 -6.3596 43 1 0.3905 -2.4154 0.0122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426413212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:30 Heat of formation + Delta-G solvation = 14.552764 kcal Electronic energy + Delta-G solvation = -22999.548856 eV Core-core repulsion = 19659.316702 eV Total energy + Delta-G solvation = -3340.232154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.91033 -39.06434 -36.48706 -34.96787 -34.12626 -32.39727 -31.37425 -30.06988 -28.66729 -27.26055 -26.88571 -25.08175 -24.73446 -22.42306 -21.61738 -20.36743 -19.17715 -17.86787 -17.28766 -16.02087 -15.79991 -15.70786 -15.45395 -15.23417 -15.12014 -14.61117 -14.03307 -13.86090 -13.45780 -13.33356 -13.03995 -12.87372 -12.85816 -12.47265 -12.27440 -12.22135 -12.11665 -11.89710 -11.66976 -11.49351 -11.15708 -10.92385 -10.84155 -10.76244 -10.24402 -9.80833 -9.33356 -9.30355 -8.68158 -8.66888 -8.32968 -7.66300 -7.27244 -6.10738 -4.17080 1.48859 1.76840 3.00850 3.28576 3.30752 3.33758 3.38066 3.99704 4.10362 4.35965 4.75494 4.78923 4.85987 4.97967 5.06236 5.09385 5.25076 5.25356 5.28777 5.33114 5.40568 5.44585 5.48527 5.62412 5.65331 5.71644 5.83461 5.88595 5.99231 6.08547 6.34364 6.74746 6.79978 6.93790 6.96501 7.16270 7.20735 7.49522 7.57733 7.61126 7.64129 7.92175 8.07841 8.81472 8.97948 9.39392 9.54240 10.99536 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.003205 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.012774 B = 8735.080310 C = 8845.381587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.643 5.643 3 C 0.096 3.904 4 C 0.202 3.798 5 C -0.196 4.196 6 C -0.078 4.078 7 C -0.144 4.144 8 C -0.057 4.057 9 C 0.175 3.825 10 N -0.637 5.637 11 C 0.085 3.915 12 C 0.696 3.304 13 O -0.595 6.595 14 N -0.729 5.729 15 C 0.267 3.733 16 C -0.541 4.541 17 H 0.061 0.939 18 C 0.064 3.936 19 N -0.886 5.886 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.276 1.276 24 C -0.182 4.182 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.386 0.614 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.266 0.734 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 18.544 12.756 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.357 5.357 3 C -0.047 4.047 4 C 0.102 3.898 5 C -0.219 4.219 6 C -0.097 4.097 7 C -0.164 4.164 8 C -0.059 4.059 9 C 0.051 3.949 10 N -0.375 5.375 11 C -0.059 4.059 12 C 0.397 3.603 13 O -0.474 6.474 14 N -0.383 5.383 15 C 0.146 3.854 16 C -0.580 4.580 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.205 4.205 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.219 0.781 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.282 18.275 13.065 23.943 hybrid contribution -0.692 0.113 -1.329 1.503 sum -8.974 18.389 11.736 23.588 Atomic orbital electron populations 1.21570 0.79837 1.02481 1.00795 1.46214 1.04737 1.03086 1.81668 1.21566 0.97170 0.85009 1.00943 1.17739 0.91187 0.85441 0.95403 1.20632 0.92054 0.98433 1.10743 1.20921 0.99478 0.91938 0.97337 1.21080 0.93785 0.98453 1.03067 1.20096 0.94173 0.94605 0.97037 1.20124 0.99177 0.92940 0.82677 1.47050 1.21801 1.54356 1.14339 1.21632 0.86697 1.00057 0.97541 1.16070 0.82922 0.78954 0.82313 1.90837 1.27834 1.61929 1.66778 1.45846 1.25929 1.54750 1.11736 1.18954 0.87046 0.88953 0.90435 1.21192 1.06440 1.32693 0.97659 0.92125 1.24936 0.94751 0.95410 0.98880 1.69967 1.12180 1.33517 1.36641 0.86489 0.78490 0.78341 0.83644 1.20114 1.21087 1.20106 1.20475 0.99026 0.90585 1.10440 0.93725 0.91895 0.91338 0.93664 0.91908 0.91434 0.86519 0.86299 0.85376 0.89018 0.90509 0.93337 0.91282 0.91598 0.78055 0.95802 0.95790 0.92444 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 10.19 59.85 0.61 1.34 16 2 N -0.64 -6.48 3.41 -187.54 -0.64 -7.11 16 3 C 0.10 0.74 10.18 59.85 0.61 1.34 16 4 C 0.20 2.54 6.55 -83.79 -0.55 1.99 16 5 C -0.20 -2.50 9.20 -39.38 -0.36 -2.86 16 6 C -0.08 -1.09 10.04 -39.61 -0.40 -1.49 16 7 C -0.14 -2.27 9.70 -39.54 -0.38 -2.65 16 8 C -0.06 -0.83 5.46 -104.65 -0.57 -1.40 16 9 C 0.17 2.48 5.57 -5.19 -0.03 2.45 16 10 N -0.64 -10.37 2.86 -188.74 -0.54 -10.91 16 11 C 0.08 1.04 10.25 59.85 0.61 1.65 16 12 C 0.70 15.04 8.28 -86.91 -0.72 14.32 16 13 O -0.59 -14.97 15.44 5.29 0.08 -14.88 16 14 N -0.73 -16.39 5.41 -66.42 -0.36 -16.75 16 15 C 0.27 7.36 5.43 -5.19 -0.03 7.33 16 16 C -0.54 -15.06 9.28 -34.44 -0.32 -15.38 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 18 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 20 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.18 -2.32 8.86 -39.38 -0.35 -2.67 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 27 H 0.07 0.52 6.20 -51.93 -0.32 0.20 16 28 H 0.04 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.06 0.36 8.07 -51.93 -0.42 -0.06 16 30 H 0.07 0.50 6.22 -51.93 -0.32 0.17 16 31 H 0.12 1.24 6.16 -52.49 -0.32 0.92 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.13 2.26 7.57 -52.49 -0.40 1.86 16 34 H 0.09 1.44 7.36 -51.93 -0.38 1.05 16 35 H 0.08 0.83 7.84 -51.93 -0.41 0.42 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 38 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 39 H 0.39 7.55 6.05 -40.82 -0.25 7.30 16 40 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.12 1.25 6.14 -52.49 -0.32 0.93 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -34.25 354.31 -8.75 -43.00 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.37 Total: 5.31 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -1.97 Total: 5.68 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.80 Total: -60.59 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.08 Total: -14.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.25 -8.75 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426413212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.554 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds