Wall clock time and date at job start Tue Mar 31 2020 07:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99966 * 2 1 4 4 C 1.39675 * 119.99622 * 179.72113 * 2 1 3 5 5 C 1.38929 * 120.07054 * 179.72210 * 4 2 1 6 6 C 1.38084 * 119.92537 * 179.74921 * 5 4 2 7 7 C 1.38311 * 120.07133 * 0.52814 * 6 5 4 8 8 C 1.38266 * 120.14967 * 359.74758 * 7 6 5 9 9 C 1.50699 * 119.96374 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47046 * 269.98230 * 9 8 7 11 11 C 1.46507 * 119.99731 * 269.99486 * 10 9 8 12 12 C 1.34779 * 120.00196 * 89.99919 * 10 9 8 13 13 O 1.21581 * 120.00001 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99544 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99589 * 179.97438 * 14 12 10 16 16 C 1.50700 * 109.47239 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99538 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00030 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00117 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99819 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46772 * 59.99798 * 20 18 16 22 22 H 1.48501 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47125 * 299.99762 * 20 18 16 24 24 C 1.38130 * 120.07589 * 359.97438 * 8 7 6 25 25 H 1.09001 * 109.47091 * 270.28179 * 1 2 3 26 26 H 1.09004 * 109.46622 * 30.27737 * 1 2 3 27 27 H 1.08997 * 109.47201 * 150.27440 * 1 2 3 28 28 H 1.09009 * 109.46732 * 269.72379 * 3 2 1 29 29 H 1.08998 * 109.47268 * 29.71742 * 3 2 1 30 30 H 1.08996 * 109.47244 * 149.72315 * 3 2 1 31 31 H 1.08000 * 120.04161 * 0.02562 * 5 4 2 32 32 H 1.07994 * 119.96784 * 180.25745 * 6 5 4 33 33 H 1.08002 * 119.92832 * 179.76921 * 7 6 5 34 34 H 1.09001 * 109.46931 * 29.97680 * 9 8 7 35 35 H 1.08994 * 109.47413 * 149.97867 * 9 8 7 36 36 H 1.09001 * 109.46733 * 90.00112 * 11 10 9 37 37 H 1.08996 * 109.47078 * 209.99814 * 11 10 9 38 38 H 1.09003 * 109.47247 * 330.00413 * 11 10 9 39 39 H 0.96994 * 120.00398 * 0.02562 * 14 12 10 40 40 H 1.09000 * 109.47391 * 300.00234 * 15 14 12 41 41 H 1.09000 * 109.47027 * 60.00258 * 15 14 12 42 42 H 0.96994 * 120.00244 * 180.02562 * 19 18 16 43 43 H 1.07994 * 120.03672 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1634 -1.2097 0.0059 5 6 3.5526 -1.2115 0.0001 6 6 4.2400 -2.4091 0.0111 7 6 3.5468 -3.6059 0.0170 8 6 2.1642 -3.6077 0.0170 9 6 1.4132 -4.9142 0.0228 10 7 1.1694 -5.3435 -1.3565 11 6 -0.0525 -4.9259 -2.0485 12 6 2.0692 -6.1226 -1.9888 13 8 3.0831 -6.4696 -1.4144 14 7 1.8446 -6.5179 -3.2576 15 6 2.8229 -7.3643 -3.9452 16 6 2.3376 -7.6612 -5.3406 17 1 1.3945 -7.2600 -5.6811 18 6 3.0971 -8.4461 -6.1822 19 7 4.2453 -8.9351 -5.7674 20 14 2.4950 -8.8148 -7.9118 21 1 2.3292 -7.5426 -8.6598 22 1 3.4868 -9.6726 -8.6087 23 1 1.1909 -9.5216 -7.8418 24 6 1.4704 -2.4133 0.0118 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8924 -0.5095 28 1 2.3835 1.5809 -1.0278 29 1 1.6063 2.0296 0.5094 30 1 3.1478 1.1397 0.5181 31 1 4.0945 -0.2773 -0.0086 32 1 5.3199 -2.4112 0.0108 33 1 4.0868 -4.5413 0.0219 34 1 2.0039 -5.6706 0.5397 35 1 0.4607 -4.7836 0.5364 36 1 0.1272 -3.9838 -2.5664 37 1 -0.3393 -5.6891 -2.7718 38 1 -0.8545 -4.7940 -1.3221 39 1 1.0356 -6.2413 -3.7158 40 1 3.7800 -6.8452 -3.9965 41 1 2.9450 -8.2980 -3.3962 42 1 4.7797 -9.4869 -6.3596 43 1 0.3905 -2.4154 0.0122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426413212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:29 Heat of formation + Delta-G solvation = -7.867823 kcal Electronic energy + Delta-G solvation = -23000.521086 eV Core-core repulsion = 19659.316702 eV Total energy + Delta-G solvation = -3341.204384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23870 -40.33708 -37.50213 -36.30298 -36.10239 -34.36304 -32.57587 -31.01648 -29.57374 -29.04943 -27.93767 -26.46307 -25.59892 -24.37140 -22.68293 -21.51251 -20.78366 -19.44360 -18.25169 -17.97076 -17.38409 -16.74551 -16.63611 -16.45667 -16.33598 -15.88762 -15.18406 -15.08108 -14.94992 -14.69511 -14.54065 -14.03033 -13.91041 -13.65326 -13.42350 -13.38316 -13.23428 -12.93901 -12.89163 -12.83723 -12.66690 -12.60230 -12.26202 -12.17316 -11.72992 -11.48746 -11.14398 -10.77976 -10.68396 -9.99633 -9.73826 -9.38528 -8.27327 -8.14669 -6.44303 0.43232 0.70089 1.43145 1.48201 1.56181 1.92327 2.26458 2.31096 2.39859 2.98780 3.07185 3.34473 3.86196 3.95733 4.13327 4.29987 4.31140 4.36971 4.45799 4.54196 4.56695 4.64912 4.65116 4.78577 4.85700 4.88884 4.92532 4.93400 4.96671 5.07363 5.12941 5.28255 5.35382 5.47697 5.60483 5.65369 5.75582 5.83867 5.87401 5.93087 6.15642 6.40609 6.59450 6.67123 7.22735 7.26522 7.75602 8.85019 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.003205 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.012774 B = 8735.080310 C = 8845.381587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.645 5.645 3 C 0.089 3.911 4 C 0.202 3.798 5 C -0.202 4.202 6 C -0.087 4.087 7 C -0.180 4.180 8 C -0.065 4.065 9 C 0.173 3.827 10 N -0.625 5.625 11 C 0.077 3.923 12 C 0.689 3.311 13 O -0.641 6.641 14 N -0.725 5.725 15 C 0.288 3.712 16 C -0.556 4.556 17 H 0.082 0.918 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.987 3.013 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.260 1.260 24 C -0.180 4.180 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.137 0.863 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.402 0.598 40 H -0.019 1.019 41 H -0.016 1.016 42 H 0.269 0.731 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.575 21.038 11.981 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.357 5.357 3 C -0.053 4.053 4 C 0.099 3.901 5 C -0.224 4.224 6 C -0.106 4.106 7 C -0.200 4.200 8 C -0.067 4.067 9 C 0.050 3.950 10 N -0.362 5.362 11 C -0.065 4.065 12 C 0.390 3.610 13 O -0.523 6.523 14 N -0.380 5.380 15 C 0.165 3.835 16 C -0.594 4.594 17 H 0.100 0.900 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.809 3.191 21 H -0.187 1.187 22 H -0.210 1.210 23 H -0.185 1.185 24 C -0.203 4.203 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.155 0.845 32 H 0.144 0.856 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.239 0.761 40 H -0.001 1.001 41 H 0.002 0.998 42 H 0.078 0.922 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.840 20.852 12.320 26.958 hybrid contribution 0.370 -0.520 -0.974 1.165 sum -11.470 20.332 11.346 25.955 Atomic orbital electron populations 1.21779 0.78208 1.03512 1.01827 1.46518 1.05950 1.02799 1.80431 1.21747 0.97582 0.84514 1.01468 1.17937 0.91314 0.86645 0.94164 1.20852 0.92704 0.98508 1.10386 1.21052 1.00078 0.92004 0.97434 1.20982 0.94952 0.97763 1.06348 1.20102 0.93520 0.95484 0.97598 1.20324 1.01072 0.92161 0.81440 1.47059 1.21727 1.52514 1.14900 1.21962 0.85716 1.00197 0.98668 1.16322 0.83267 0.79440 0.81948 1.90808 1.30166 1.63659 1.67665 1.45451 1.25703 1.54604 1.12275 1.18358 0.86706 0.87400 0.91086 1.21560 1.07345 1.32970 0.97499 0.89958 1.26089 0.94613 0.94801 1.04086 1.70143 1.13838 1.34287 1.38705 0.85183 0.78226 0.78598 0.77044 1.18673 1.21019 1.18477 1.20654 1.00264 0.89705 1.09673 0.92616 0.90047 0.91193 0.93416 0.89586 0.91399 0.84506 0.85631 0.88953 0.91605 0.85887 0.92476 0.91307 0.87258 0.76111 1.00148 0.99764 0.92225 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 10.19 127.77 1.30 2.29 16 2 N -0.64 -10.85 3.41 -747.26 -2.55 -13.40 16 3 C 0.09 1.08 10.18 127.77 1.30 2.38 16 4 C 0.20 4.62 6.55 38.21 0.25 4.88 16 5 C -0.20 -4.96 9.20 22.40 0.21 -4.76 16 6 C -0.09 -2.53 10.04 22.25 0.22 -2.30 16 7 C -0.18 -6.09 9.70 22.29 0.22 -5.87 16 8 C -0.06 -1.88 5.46 -19.88 -0.11 -1.99 16 9 C 0.17 4.81 5.57 85.63 0.48 5.28 16 10 N -0.63 -19.95 2.86 -869.30 -2.48 -22.43 16 11 C 0.08 1.64 10.25 127.77 1.31 2.95 16 12 C 0.69 30.93 8.28 179.05 1.48 32.41 16 13 O -0.64 -34.68 15.44 -3.97 -0.06 -34.74 16 14 N -0.73 -33.55 5.41 -482.30 -2.61 -36.16 16 15 C 0.29 16.72 5.43 85.63 0.46 17.19 16 16 C -0.56 -31.32 9.28 25.60 0.24 -31.08 16 17 H 0.08 4.18 7.60 -2.91 -0.02 4.15 16 18 C 0.00 0.21 5.46 84.66 0.46 0.67 16 19 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 20 Si 0.99 43.08 29.54 68.60 2.03 45.11 16 21 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 24 C -0.18 -4.18 8.86 22.40 0.20 -3.98 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.08 0.63 8.07 -2.38 -0.02 0.61 16 27 H 0.07 0.77 6.20 -2.39 -0.01 0.75 16 28 H 0.05 0.57 8.14 -2.38 -0.02 0.56 16 29 H 0.09 0.66 8.07 -2.39 -0.02 0.64 16 30 H 0.07 0.82 6.22 -2.39 -0.01 0.81 16 31 H 0.14 2.70 6.16 -2.91 -0.02 2.68 16 32 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 33 H 0.09 3.71 7.57 -2.91 -0.02 3.68 16 34 H 0.07 2.18 7.36 -2.39 -0.02 2.16 16 35 H 0.12 2.26 7.84 -2.39 -0.02 2.24 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.50 6.36 -2.39 -0.02 1.48 16 38 H 0.11 1.45 7.89 -2.39 -0.02 1.43 16 39 H 0.40 15.58 6.05 -92.71 -0.56 15.02 16 40 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 41 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.15 2.48 6.14 -2.91 -0.02 2.46 16 Total: -1.00 -79.70 354.31 3.08 -76.62 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.45 Total: 24.30 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 8.02 Total: 18.07 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -7.36 Total: -129.35 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.06 Total: -34.74 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -79.70 3.08 -76.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426413212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.750 kcal (2) G-P(sol) polarization free energy of solvation -79.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds