Wall clock time and date at job start Tue Mar 31 2020 07:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.53001 * 109.47367 * 269.99917 * 3 2 1 5 5 C 1.53000 * 109.46940 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.46759 * 180.02562 * 5 4 3 7 7 C 1.34778 * 119.99953 * 180.02562 * 6 5 4 8 8 O 1.21594 * 119.99898 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00338 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00429 * 179.97438 * 9 7 6 11 11 C 1.50694 * 109.47251 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00208 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99996 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99900 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99941 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47009 * 60.00030 * 15 13 11 17 17 H 1.48503 * 109.46872 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47089 * 299.99878 * 15 13 11 19 19 C 1.39675 * 120.00236 * 180.02562 * 2 1 3 20 20 C 1.38914 * 120.07317 * 359.97438 * 19 2 1 21 21 C 1.38100 * 119.92419 * 179.97438 * 20 19 2 22 22 C 1.38288 * 120.07489 * 359.97438 * 21 20 19 23 23 C 1.38283 * 120.14964 * 0.27921 * 22 21 20 24 24 C 1.38104 * 120.07445 * 359.44998 * 23 22 21 25 25 H 1.08994 * 109.47097 * 269.99854 * 1 2 3 26 26 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 27 27 H 1.08996 * 109.46960 * 149.99772 * 1 2 3 28 28 H 1.09001 * 109.47060 * 30.00465 * 3 2 1 29 29 H 1.09007 * 109.46721 * 150.00254 * 3 2 1 30 30 H 1.08996 * 109.47038 * 300.00136 * 4 3 2 31 31 H 1.08997 * 109.46498 * 60.00152 * 4 3 2 32 32 H 1.08996 * 109.47314 * 299.99903 * 5 4 3 33 33 H 1.09002 * 109.47360 * 60.00190 * 5 4 3 34 34 H 0.96998 * 119.99994 * 0.02562 * 6 5 4 35 35 H 0.96998 * 119.99609 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47046 * 300.00355 * 10 9 7 37 37 H 1.09003 * 109.46998 * 59.99905 * 10 9 7 38 38 H 0.96998 * 120.00039 * 180.02562 * 14 13 11 39 39 H 1.07999 * 120.03435 * 359.97438 * 20 19 2 40 40 H 1.08000 * 119.95830 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.92149 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.96059 * 179.69879 * 23 22 21 43 43 H 1.07999 * 120.04050 * 180.27354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2180 3.0352 -1.4424 6 7 3.4616 3.4585 -2.8236 7 6 4.1249 4.6056 -3.0698 8 8 4.5207 5.2894 -2.1456 9 7 4.3487 4.9953 -4.3405 10 6 5.0692 6.2424 -4.6082 11 6 5.1856 6.4457 -6.0968 12 1 4.7647 5.7189 -6.7756 13 6 5.8297 7.5597 -6.5922 14 7 6.3419 8.4451 -5.7655 15 14 5.9734 7.8121 -8.4375 16 1 4.6155 7.8877 -9.0340 17 1 6.7039 9.0762 -8.7088 18 1 6.7145 6.6732 -9.0366 19 6 2.1634 -1.2096 -0.0005 20 6 1.4704 -2.4135 -0.0005 21 6 2.1641 -3.6077 -0.0016 22 6 3.5470 -3.6058 -0.0032 23 6 4.2399 -2.4092 0.0021 24 6 3.5525 -1.2114 -0.0025 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.0416 0.9509 -1.9563 31 1 1.5001 1.8408 -1.9562 32 1 2.6293 3.7950 -0.9284 33 1 4.1704 2.9045 -0.9287 34 1 3.1456 2.9131 -3.5609 35 1 4.0326 4.4499 -5.0777 36 1 4.5248 7.0781 -4.1684 37 1 6.0659 6.1874 -4.1702 38 1 6.7946 9.2290 -6.1139 39 1 0.3904 -2.4156 0.0003 40 1 1.6259 -4.5440 -0.0020 41 1 4.0869 -4.5412 -0.0036 42 1 5.3199 -2.4113 0.0057 43 1 4.0943 -0.2771 -0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426435776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:18 Heat of formation + Delta-G solvation = -4.574722 kcal Electronic energy + Delta-G solvation = -21856.950021 eV Core-core repulsion = 18515.888436 eV Total energy + Delta-G solvation = -3341.061584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.89517 -39.15264 -37.00100 -35.05332 -34.00762 -32.43950 -31.81270 -30.96801 -29.83004 -27.65085 -26.58652 -24.66561 -22.79722 -22.30599 -21.81522 -20.82720 -20.04512 -18.02128 -17.95941 -16.37865 -15.95539 -15.82920 -15.55469 -15.39670 -14.91072 -14.69168 -14.57420 -14.13842 -13.93497 -13.62131 -13.47687 -13.15127 -12.83855 -12.55123 -12.42389 -12.27415 -11.94047 -11.79164 -11.72985 -11.51996 -11.10485 -10.96259 -10.91043 -10.83728 -10.28751 -10.12021 -9.40206 -9.36554 -9.11548 -8.76688 -8.65442 -7.73628 -7.53980 -6.13589 -4.20183 1.24738 1.41539 2.77608 3.26901 3.30819 3.32558 3.44586 3.71464 3.97656 4.34273 4.53320 4.58847 4.78004 4.83178 4.88287 4.92903 5.02140 5.17227 5.19315 5.22218 5.24254 5.28175 5.30239 5.38581 5.43083 5.55333 5.68201 5.81567 5.96475 6.01904 6.09459 6.30475 6.45793 6.65487 6.86990 6.99435 7.14120 7.25454 7.53695 7.57096 7.59272 7.92962 8.06512 8.78298 8.96612 9.35427 9.50144 10.96619 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026910 B = 0.002222 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.237826 B =12595.661948 C =12946.085635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.632 5.632 3 C 0.126 3.874 4 C -0.150 4.150 5 C 0.144 3.856 6 N -0.758 5.758 7 C 0.692 3.308 8 O -0.602 6.602 9 N -0.730 5.730 10 C 0.267 3.733 11 C -0.542 4.542 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.886 5.886 15 Si 0.905 3.095 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.216 3.784 20 C -0.201 4.201 21 C -0.075 4.075 22 C -0.183 4.183 23 C -0.072 4.072 24 C -0.196 4.196 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.391 0.609 35 H 0.386 0.614 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 -23.130 11.678 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.342 5.342 3 C 0.003 3.997 4 C -0.189 4.189 5 C 0.019 3.981 6 N -0.416 5.416 7 C 0.392 3.608 8 O -0.481 6.481 9 N -0.382 5.382 10 C 0.146 3.854 11 C -0.581 4.581 12 H 0.080 0.920 13 C -0.141 4.141 14 N -0.523 5.523 15 Si 0.732 3.268 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.115 3.885 20 C -0.223 4.223 21 C -0.094 4.094 22 C -0.203 4.203 23 C -0.091 4.091 24 C -0.218 4.218 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.224 0.776 35 H 0.218 0.782 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.286 -22.077 12.550 27.790 hybrid contribution -0.215 -0.275 -1.749 1.784 sum -11.501 -22.351 10.801 27.359 Atomic orbital electron populations 1.21634 0.79625 1.02696 1.01111 1.46460 1.04840 1.02868 1.80032 1.21341 0.97665 0.84780 0.95956 1.22248 1.01212 0.97198 0.98283 1.20924 0.99552 0.94349 0.83321 1.45132 1.63342 1.25177 1.07929 1.16160 0.79226 0.80897 0.84545 1.90871 1.57701 1.55783 1.43767 1.45719 1.60700 1.27657 1.04139 1.18968 0.91467 0.79227 0.95746 1.21194 1.37998 1.07806 0.91075 0.92021 1.24953 0.95029 0.95517 0.98566 1.69971 1.36339 1.11323 1.34659 0.86467 0.78282 0.77579 0.84503 1.20111 1.21078 1.20092 1.17863 0.91277 0.85693 0.93674 1.20673 0.99531 0.91213 1.10909 1.20875 0.94266 0.97115 0.97101 1.20909 0.94281 0.97847 1.07239 1.20932 0.99568 0.92002 0.96586 1.20771 0.92191 0.98886 1.10002 0.93387 0.91374 0.91439 0.90261 0.90150 0.90938 0.91182 0.91981 0.91949 0.77615 0.78196 0.95769 0.95762 0.92415 0.86225 0.86434 0.86645 0.86217 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.19 59.85 0.61 1.19 16 2 N -0.63 -5.25 3.01 -179.62 -0.54 -5.79 16 3 C 0.13 1.01 5.16 -4.04 -0.02 0.99 16 4 C -0.15 -1.33 5.65 -26.73 -0.15 -1.48 16 5 C 0.14 1.78 5.67 -4.04 -0.02 1.76 16 6 N -0.76 -11.34 5.56 -65.22 -0.36 -11.71 16 7 C 0.69 14.55 8.57 -86.92 -0.74 13.80 16 8 O -0.60 -15.32 16.34 5.28 0.09 -15.23 16 9 N -0.73 -15.94 5.55 -66.42 -0.37 -16.31 16 10 C 0.27 7.27 5.43 -5.20 -0.03 7.24 16 11 C -0.54 -14.94 9.28 -34.44 -0.32 -15.25 16 12 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 15 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.22 2.06 6.55 -83.79 -0.55 1.52 16 20 C -0.20 -1.77 9.21 -39.38 -0.36 -2.13 16 21 C -0.07 -0.63 10.04 -39.61 -0.40 -1.02 16 22 C -0.18 -1.57 10.04 -39.55 -0.40 -1.97 16 23 C -0.07 -0.66 10.04 -39.61 -0.40 -1.05 16 24 C -0.20 -1.90 9.21 -39.38 -0.36 -2.26 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 27 H 0.07 0.38 6.20 -51.93 -0.32 0.06 16 28 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 29 H 0.08 0.64 6.20 -51.92 -0.32 0.32 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.39 4.72 8.49 -40.82 -0.35 4.38 16 35 H 0.39 7.19 8.34 -40.82 -0.34 6.85 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.12 0.86 6.14 -52.49 -0.32 0.54 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.12 1.12 6.14 -52.49 -0.32 0.80 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -34.15 359.82 -9.86 -44.01 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.58 Total: 6.25 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -3.24 Total: 2.98 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.54 Total: -59.43 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.09 Total: -15.23 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.15 -9.86 -44.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426435776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.436 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds