Wall clock time and date at job start Tue Mar 31 2020 07:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.53001 * 109.47367 * 269.99917 * 3 2 1 5 5 C 1.53000 * 109.46940 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.46759 * 180.02562 * 5 4 3 7 7 C 1.34778 * 119.99953 * 180.02562 * 6 5 4 8 8 O 1.21594 * 119.99898 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00338 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00429 * 179.97438 * 9 7 6 11 11 C 1.50694 * 109.47251 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00208 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99996 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99900 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99941 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47009 * 60.00030 * 15 13 11 17 17 H 1.48503 * 109.46872 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47089 * 299.99878 * 15 13 11 19 19 C 1.39675 * 120.00236 * 180.02562 * 2 1 3 20 20 C 1.38914 * 120.07317 * 359.97438 * 19 2 1 21 21 C 1.38100 * 119.92419 * 179.97438 * 20 19 2 22 22 C 1.38288 * 120.07489 * 359.97438 * 21 20 19 23 23 C 1.38283 * 120.14964 * 0.27921 * 22 21 20 24 24 C 1.38104 * 120.07445 * 359.44998 * 23 22 21 25 25 H 1.08994 * 109.47097 * 269.99854 * 1 2 3 26 26 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 27 27 H 1.08996 * 109.46960 * 149.99772 * 1 2 3 28 28 H 1.09001 * 109.47060 * 30.00465 * 3 2 1 29 29 H 1.09007 * 109.46721 * 150.00254 * 3 2 1 30 30 H 1.08996 * 109.47038 * 300.00136 * 4 3 2 31 31 H 1.08997 * 109.46498 * 60.00152 * 4 3 2 32 32 H 1.08996 * 109.47314 * 299.99903 * 5 4 3 33 33 H 1.09002 * 109.47360 * 60.00190 * 5 4 3 34 34 H 0.96998 * 119.99994 * 0.02562 * 6 5 4 35 35 H 0.96998 * 119.99609 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47046 * 300.00355 * 10 9 7 37 37 H 1.09003 * 109.46998 * 59.99905 * 10 9 7 38 38 H 0.96998 * 120.00039 * 180.02562 * 14 13 11 39 39 H 1.07999 * 120.03435 * 359.97438 * 20 19 2 40 40 H 1.08000 * 119.95830 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.92149 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.96059 * 179.69879 * 23 22 21 43 43 H 1.07999 * 120.04050 * 180.27354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2180 3.0352 -1.4424 6 7 3.4616 3.4585 -2.8236 7 6 4.1249 4.6056 -3.0698 8 8 4.5207 5.2894 -2.1456 9 7 4.3487 4.9953 -4.3405 10 6 5.0692 6.2424 -4.6082 11 6 5.1856 6.4457 -6.0968 12 1 4.7647 5.7189 -6.7756 13 6 5.8297 7.5597 -6.5922 14 7 6.3419 8.4451 -5.7655 15 14 5.9734 7.8121 -8.4375 16 1 4.6155 7.8877 -9.0340 17 1 6.7039 9.0762 -8.7088 18 1 6.7145 6.6732 -9.0366 19 6 2.1634 -1.2096 -0.0005 20 6 1.4704 -2.4135 -0.0005 21 6 2.1641 -3.6077 -0.0016 22 6 3.5470 -3.6058 -0.0032 23 6 4.2399 -2.4092 0.0021 24 6 3.5525 -1.2114 -0.0025 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.0416 0.9509 -1.9563 31 1 1.5001 1.8408 -1.9562 32 1 2.6293 3.7950 -0.9284 33 1 4.1704 2.9045 -0.9287 34 1 3.1456 2.9131 -3.5609 35 1 4.0326 4.4499 -5.0777 36 1 4.5248 7.0781 -4.1684 37 1 6.0659 6.1874 -4.1702 38 1 6.7946 9.2290 -6.1139 39 1 0.3904 -2.4156 0.0003 40 1 1.6259 -4.5440 -0.0020 41 1 4.0869 -4.5412 -0.0036 42 1 5.3199 -2.4113 0.0057 43 1 4.0943 -0.2771 -0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426435776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:15 Heat of formation + Delta-G solvation = -27.587442 kcal Electronic energy + Delta-G solvation = -21857.947927 eV Core-core repulsion = 18515.888436 eV Total energy + Delta-G solvation = -3342.059491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -40.90131 -40.45613 -37.76250 -36.39149 -35.84506 -34.37620 -32.87355 -31.69315 -30.50056 -29.30126 -27.69437 -25.59918 -24.46236 -23.20660 -22.71355 -21.94199 -21.30771 -19.72885 -18.61802 -18.02482 -17.45873 -16.86637 -16.65742 -16.39915 -16.25028 -15.79549 -15.53681 -15.22202 -15.02823 -14.90136 -14.42312 -14.34271 -14.01991 -14.00452 -13.42544 -13.27989 -13.11711 -12.90645 -12.81695 -12.66984 -12.61576 -12.22823 -12.18207 -11.86264 -11.55925 -11.49522 -11.28264 -10.78962 -10.72311 -10.26945 -9.77069 -9.57975 -8.27743 -8.17150 -6.44339 0.59263 0.75874 1.43680 1.48292 1.56267 1.85656 2.24699 2.25753 2.41014 3.05393 3.06922 3.55542 3.86960 3.92420 4.09307 4.15880 4.21378 4.33201 4.42691 4.47460 4.58551 4.67712 4.68688 4.70444 4.83166 4.90465 4.95802 5.07279 5.07577 5.20843 5.22821 5.27534 5.43388 5.49120 5.55113 5.67363 5.68531 5.81231 5.85650 6.03882 6.26875 6.38838 6.61997 6.67194 7.24791 7.31777 7.72691 8.84403 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026910 B = 0.002222 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.237826 B =12595.661948 C =12946.085635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.634 5.634 3 C 0.127 3.873 4 C -0.130 4.130 5 C 0.142 3.858 6 N -0.733 5.733 7 C 0.689 3.311 8 O -0.650 6.650 9 N -0.724 5.724 10 C 0.285 3.715 11 C -0.556 4.556 12 H 0.084 0.916 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.987 3.013 16 H -0.262 1.262 17 H -0.285 1.285 18 H -0.262 1.262 19 C 0.203 3.797 20 C -0.210 4.210 21 C -0.080 4.080 22 C -0.193 4.193 23 C -0.085 4.085 24 C -0.214 4.214 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.410 0.590 35 H 0.405 0.595 36 H -0.014 1.014 37 H -0.015 1.015 38 H 0.269 0.731 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.139 -25.034 10.262 30.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.344 5.344 3 C 0.003 3.997 4 C -0.169 4.169 5 C 0.018 3.982 6 N -0.391 5.391 7 C 0.389 3.611 8 O -0.533 6.533 9 N -0.378 5.378 10 C 0.162 3.838 11 C -0.594 4.594 12 H 0.102 0.898 13 C -0.197 4.197 14 N -0.569 5.569 15 Si 0.810 3.190 16 H -0.186 1.186 17 H -0.211 1.211 18 H -0.187 1.187 19 C 0.101 3.899 20 C -0.232 4.232 21 C -0.099 4.099 22 C -0.213 4.213 23 C -0.103 4.103 24 C -0.237 4.237 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.246 0.754 35 H 0.240 0.760 36 H 0.004 0.996 37 H 0.003 0.997 38 H 0.078 0.922 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.812 -24.069 11.126 29.449 hybrid contribution 0.216 0.252 -1.204 1.249 sum -12.596 -23.817 9.922 28.712 Atomic orbital electron populations 1.21772 0.78383 1.03493 1.01745 1.46546 1.05604 1.02400 1.79868 1.21309 0.97989 0.85181 0.95201 1.22068 1.00893 0.94720 0.99210 1.21100 0.99655 0.96040 0.81440 1.44932 1.61193 1.23038 1.09910 1.16346 0.79289 0.81963 0.83499 1.90838 1.59672 1.57737 1.45050 1.45311 1.60606 1.26509 1.05385 1.18401 0.89366 0.80272 0.95771 1.21572 1.38145 1.08531 0.91149 0.89849 1.26086 0.94237 0.94979 1.04378 1.70139 1.37228 1.12060 1.37458 0.85182 0.78879 0.77663 0.77310 1.18644 1.21065 1.18684 1.18054 0.91411 0.86455 0.93938 1.20923 1.00401 0.91125 1.10739 1.21196 0.94390 0.97963 0.96344 1.21182 0.94759 0.98314 1.07055 1.21164 1.00305 0.92199 0.96660 1.20900 0.92666 0.99137 1.10972 0.92826 0.90458 0.90773 0.89115 0.90456 0.91193 0.90118 0.92370 0.92842 0.75423 0.76023 0.99643 0.99723 0.92224 0.84804 0.84371 0.85154 0.85279 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 10.19 127.77 1.30 2.22 16 2 N -0.63 -9.47 3.01 -722.18 -2.17 -11.65 16 3 C 0.13 1.84 5.16 86.38 0.45 2.29 16 4 C -0.13 -2.07 5.65 30.59 0.17 -1.90 16 5 C 0.14 3.39 5.67 86.38 0.49 3.88 16 6 N -0.73 -21.15 5.56 -478.53 -2.66 -23.81 16 7 C 0.69 29.22 8.57 179.05 1.53 30.75 16 8 O -0.65 -34.16 16.34 -4.01 -0.07 -34.22 16 9 N -0.72 -31.81 5.55 -482.30 -2.68 -34.49 16 10 C 0.29 16.08 5.43 85.63 0.46 16.54 16 11 C -0.56 -30.64 9.28 25.60 0.24 -30.40 16 12 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 13 C 0.00 0.16 5.46 84.66 0.46 0.62 16 14 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 15 Si 0.99 42.51 29.54 68.60 2.03 44.54 16 16 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 17 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 C 0.20 3.63 6.55 38.21 0.25 3.88 16 20 C -0.21 -3.35 9.21 22.40 0.21 -3.14 16 21 C -0.08 -1.21 10.04 22.25 0.22 -0.98 16 22 C -0.19 -3.09 10.04 22.29 0.22 -2.86 16 23 C -0.08 -1.49 10.04 22.25 0.22 -1.26 16 24 C -0.21 -4.04 9.21 22.40 0.21 -3.83 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.08 0.66 8.07 -2.39 -0.02 0.64 16 27 H 0.07 0.67 6.20 -2.39 -0.01 0.65 16 28 H 0.09 1.12 8.07 -2.39 -0.02 1.10 16 29 H 0.08 1.18 6.20 -2.38 -0.01 1.17 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.41 8.98 8.49 -92.71 -0.79 8.20 16 35 H 0.40 14.57 8.34 -92.71 -0.77 13.80 16 36 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.13 1.65 6.14 -2.91 -0.02 1.63 16 40 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.13 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.12 2.21 6.14 -2.91 -0.02 2.19 16 Total: -1.00 -75.72 359.82 0.64 -75.08 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.54 Total: 25.11 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 6.44 Total: 15.80 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -7.23 Total: -126.30 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.07 Total: -34.22 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -75.72 0.64 -75.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426435776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.493 kcal (2) G-P(sol) polarization free energy of solvation -75.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds