Wall clock time and date at job start Tue Mar 31 2020 07:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99764 * 2 1 4 4 C 1.46893 * 110.99792 * 123.95100 * 2 1 3 5 5 H 1.08999 * 109.47596 * 302.17828 * 4 2 1 6 6 C 1.53004 * 109.47028 * 182.17976 * 4 2 1 7 7 N 1.46501 * 109.47520 * 176.60637 * 6 4 2 8 8 C 1.34767 * 120.00169 * 174.77660 * 7 6 4 9 9 O 1.21590 * 120.00137 * 359.72442 * 8 7 6 10 10 N 1.34777 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00286 * 179.72606 * 10 8 7 12 12 C 1.50702 * 109.47248 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00138 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99780 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00143 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47218 * 89.99539 * 16 14 12 18 18 H 1.48501 * 109.46951 * 209.99990 * 16 14 12 19 19 H 1.48506 * 109.46885 * 329.99349 * 16 14 12 20 20 C 1.50700 * 109.47260 * 62.17996 * 4 2 1 21 21 C 1.38232 * 119.99833 * 39.72639 * 20 4 2 22 22 C 1.38237 * 120.00077 * 179.78810 * 21 20 4 23 23 C 1.38239 * 119.99929 * 0.44118 * 22 21 20 24 24 C 1.38236 * 119.99703 * 359.80929 * 23 22 21 25 25 C 1.38232 * 120.00048 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.47526 * 299.99785 * 1 2 3 27 27 H 1.09002 * 109.47469 * 60.00515 * 1 2 3 28 28 H 1.09008 * 109.47169 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47063 * 190.44217 * 3 2 1 30 30 H 1.09002 * 109.46823 * 310.43847 * 3 2 1 31 31 H 1.08997 * 109.46816 * 70.43487 * 3 2 1 32 32 H 1.08999 * 109.47119 * 56.60255 * 6 4 2 33 33 H 1.09010 * 109.46739 * 296.60326 * 6 4 2 34 34 H 0.97003 * 119.99717 * 354.76923 * 7 6 4 35 35 H 0.97007 * 120.00095 * 359.72948 * 10 8 7 36 36 H 1.08998 * 109.46875 * 300.00218 * 11 10 8 37 37 H 1.08994 * 109.47027 * 60.00392 * 11 10 8 38 38 H 0.97003 * 120.00097 * 179.97438 * 15 14 12 39 39 H 1.08003 * 120.00311 * 359.97438 * 21 20 4 40 40 H 1.07996 * 120.00374 * 180.26793 * 22 21 20 41 41 H 1.07997 * 120.00360 * 179.83202 * 23 22 21 42 42 H 1.08000 * 120.00143 * 179.97438 * 24 23 22 43 43 H 1.08003 * 119.99806 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.6147 -0.3434 2.0674 6 6 3.5239 -0.6978 1.1347 7 7 4.0460 -1.3931 2.3138 8 6 5.3752 -1.5537 2.4678 9 8 6.1409 -1.1259 1.6257 10 7 5.8555 -2.1929 3.5528 11 6 7.3001 -2.3728 3.7173 12 6 7.5712 -3.1124 5.0020 13 1 6.7496 -3.4175 5.6331 14 6 8.8681 -3.3986 5.3723 15 7 9.8686 -3.0265 4.6040 16 14 9.2041 -4.3160 6.9644 17 1 9.2203 -5.7771 6.6999 18 1 10.5206 -3.8968 7.5088 19 1 8.1385 -4.0031 7.9503 20 6 1.5563 -2.2029 1.0219 21 6 1.5420 -2.8239 -0.2129 22 6 1.1434 -4.1434 -0.3184 23 6 0.7506 -4.8391 0.8097 24 6 0.7600 -4.2164 2.0438 25 6 1.1628 -2.8983 2.1499 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.0691 1.3485 -0.1863 30 1 1.5032 1.9495 -0.7822 31 1 1.8043 1.8340 0.9683 32 1 3.8412 0.3447 1.1575 33 1 3.9071 -1.1746 0.2324 34 1 3.4350 -1.7378 2.9837 35 1 5.2447 -2.5339 4.2248 36 1 7.6926 -2.9470 2.8781 37 1 7.7863 -1.3978 3.7494 38 1 10.7811 -3.2275 4.8646 39 1 1.8449 -2.2792 -1.0949 40 1 1.1363 -4.6299 -1.2826 41 1 0.4366 -5.8691 0.7269 42 1 0.4527 -4.7597 2.9252 43 1 1.1698 -2.4118 3.1141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426436480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:37 Heat of formation + Delta-G solvation = 1.743251 kcal Electronic energy + Delta-G solvation = -23076.353476 eV Core-core repulsion = 19735.565859 eV Total energy + Delta-G solvation = -3340.787616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14278 -38.89112 -37.50034 -34.49643 -33.89187 -32.28973 -31.58661 -30.94999 -28.94101 -27.46264 -26.81916 -24.27597 -22.98674 -22.45524 -22.23728 -20.26863 -20.04263 -18.02999 -17.11850 -16.36422 -16.05123 -15.79368 -15.34801 -14.89254 -14.74974 -14.54582 -14.49465 -14.27832 -13.59416 -13.45090 -13.37783 -12.99844 -12.73010 -12.58718 -12.45448 -12.09038 -11.94708 -11.88367 -11.55950 -11.50506 -11.08897 -10.92670 -10.90403 -10.82360 -10.26972 -9.37471 -9.33085 -8.97641 -8.79508 -8.72200 -8.65109 -8.61335 -7.70014 -6.11880 -4.18180 1.25236 1.35725 3.20508 3.26961 3.33121 3.35792 3.67733 3.90290 4.02572 4.36008 4.47995 4.75814 4.85880 4.90804 4.94732 5.05524 5.10087 5.13895 5.20742 5.24122 5.31960 5.39131 5.43787 5.54388 5.65909 5.67502 5.80657 5.93172 5.97806 6.01595 6.36734 6.42673 6.46172 6.71169 6.76901 6.93191 6.95489 7.16724 7.56885 7.59813 7.62240 7.95353 8.08774 8.80834 8.99630 9.38491 9.53011 10.98431 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018318 B = 0.003507 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.219057 B = 7981.793484 C = 8959.368105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.534 5.534 3 C 0.017 3.983 4 C 0.114 3.886 5 H 0.055 0.945 6 C 0.151 3.849 7 N -0.754 5.754 8 C 0.695 3.305 9 O -0.601 6.601 10 N -0.729 5.729 11 C 0.267 3.733 12 C -0.541 4.541 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.076 4.076 21 C -0.089 4.089 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.025 0.975 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.389 0.611 35 H 0.385 0.615 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.265 0.735 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.214 2.732 -7.542 24.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.258 5.258 3 C -0.131 4.131 4 C 0.005 3.995 5 H 0.072 0.928 6 C 0.025 3.975 7 N -0.412 5.412 8 C 0.395 3.605 9 O -0.480 6.480 10 N -0.382 5.382 11 C 0.146 3.854 12 C -0.579 4.579 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.077 4.077 21 C -0.108 4.108 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.137 4.137 25 C -0.136 4.136 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.222 0.778 35 H 0.217 0.783 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.148 0.852 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.071 2.916 -8.772 23.928 hybrid contribution -0.578 -0.480 2.248 2.371 sum -22.649 2.436 -6.523 23.695 Atomic orbital electron populations 1.22415 0.86873 1.02510 1.00573 1.61900 1.08113 1.13944 1.41889 1.22521 1.01860 0.88175 1.00530 1.20772 0.95016 0.91027 0.92701 0.92761 1.21053 0.89895 0.97301 0.89230 1.45026 1.06119 1.64349 1.25743 1.16084 0.81435 0.79781 0.83248 1.90871 1.56569 1.56288 1.44243 1.45695 1.11091 1.59449 1.21917 1.18968 0.72898 0.96903 0.96621 1.21230 0.92717 1.37923 1.06048 0.91993 1.24944 0.95859 0.95769 0.97468 1.69984 0.99248 1.45666 1.37409 0.86420 0.77743 0.79868 0.82880 1.20494 1.21034 1.19801 1.19630 0.99462 0.94757 0.93821 1.21044 0.97866 0.94237 0.97615 1.21189 0.99674 0.94714 0.98582 1.21155 1.00127 0.99744 0.92920 1.21070 1.00220 0.94809 0.97631 1.20990 0.99828 0.94986 0.97781 0.95671 0.91174 0.90999 0.90310 0.91142 0.95259 0.91647 0.90687 0.77836 0.78276 0.95765 0.95764 0.92496 0.85164 0.86216 0.86356 0.86136 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.27 60.06 0.56 0.75 16 2 N -0.53 -5.13 4.17 -244.58 -1.02 -6.15 16 3 C 0.02 0.15 8.87 60.07 0.53 0.68 16 4 C 0.11 1.21 1.78 -68.87 -0.12 1.09 16 5 H 0.05 0.55 8.00 -51.93 -0.42 0.14 16 6 C 0.15 2.09 4.75 -4.04 -0.02 2.07 16 7 N -0.75 -11.88 5.30 -65.22 -0.35 -12.23 16 8 C 0.69 14.92 8.57 -86.93 -0.74 14.18 16 9 O -0.60 -15.52 16.34 5.29 0.09 -15.44 16 10 N -0.73 -16.15 5.55 -66.42 -0.37 -16.52 16 11 C 0.27 7.33 5.43 -5.19 -0.03 7.30 16 12 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 13 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 16 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 C -0.08 -0.83 3.42 -104.63 -0.36 -1.19 16 21 C -0.09 -0.99 8.60 -39.58 -0.34 -1.33 16 22 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 23 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.20 8.85 -39.58 -0.35 -1.55 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 28 H 0.07 0.61 6.55 -51.92 -0.34 0.27 16 29 H 0.08 0.76 6.54 -51.93 -0.34 0.42 16 30 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 31 H 0.03 0.25 8.12 -51.93 -0.42 -0.18 16 32 H 0.07 0.93 6.27 -51.93 -0.33 0.60 16 33 H 0.07 1.19 8.13 -51.92 -0.42 0.77 16 34 H 0.39 5.09 7.50 -40.82 -0.31 4.78 16 35 H 0.39 7.32 8.34 -40.82 -0.34 6.98 16 36 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.13 1.43 7.71 -52.48 -0.40 1.03 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.12 1.02 7.99 -52.48 -0.42 0.60 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -33.51 355.75 -9.70 -43.21 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.65 Total: 7.91 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -2.48 Total: 3.53 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -1.00 Total: -60.66 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.09 Total: -15.44 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.51 -9.70 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426436480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.950 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds