Wall clock time and date at job start Tue Mar 31 2020 07:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99764 * 2 1 4 4 C 1.46893 * 110.99792 * 123.95100 * 2 1 3 5 5 H 1.08999 * 109.47596 * 302.17828 * 4 2 1 6 6 C 1.53004 * 109.47028 * 182.17976 * 4 2 1 7 7 N 1.46501 * 109.47520 * 176.60637 * 6 4 2 8 8 C 1.34767 * 120.00169 * 174.77660 * 7 6 4 9 9 O 1.21590 * 120.00137 * 359.72442 * 8 7 6 10 10 N 1.34777 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00286 * 179.72606 * 10 8 7 12 12 C 1.50702 * 109.47248 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00138 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99780 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00143 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47218 * 89.99539 * 16 14 12 18 18 H 1.48501 * 109.46951 * 209.99990 * 16 14 12 19 19 H 1.48506 * 109.46885 * 329.99349 * 16 14 12 20 20 C 1.50700 * 109.47260 * 62.17996 * 4 2 1 21 21 C 1.38232 * 119.99833 * 39.72639 * 20 4 2 22 22 C 1.38237 * 120.00077 * 179.78810 * 21 20 4 23 23 C 1.38239 * 119.99929 * 0.44118 * 22 21 20 24 24 C 1.38236 * 119.99703 * 359.80929 * 23 22 21 25 25 C 1.38232 * 120.00048 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.47526 * 299.99785 * 1 2 3 27 27 H 1.09002 * 109.47469 * 60.00515 * 1 2 3 28 28 H 1.09008 * 109.47169 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47063 * 190.44217 * 3 2 1 30 30 H 1.09002 * 109.46823 * 310.43847 * 3 2 1 31 31 H 1.08997 * 109.46816 * 70.43487 * 3 2 1 32 32 H 1.08999 * 109.47119 * 56.60255 * 6 4 2 33 33 H 1.09010 * 109.46739 * 296.60326 * 6 4 2 34 34 H 0.97003 * 119.99717 * 354.76923 * 7 6 4 35 35 H 0.97007 * 120.00095 * 359.72948 * 10 8 7 36 36 H 1.08998 * 109.46875 * 300.00218 * 11 10 8 37 37 H 1.08994 * 109.47027 * 60.00392 * 11 10 8 38 38 H 0.97003 * 120.00097 * 179.97438 * 15 14 12 39 39 H 1.08003 * 120.00311 * 359.97438 * 21 20 4 40 40 H 1.07996 * 120.00374 * 180.26793 * 22 21 20 41 41 H 1.07997 * 120.00360 * 179.83202 * 23 22 21 42 42 H 1.08000 * 120.00143 * 179.97438 * 24 23 22 43 43 H 1.08003 * 119.99806 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.6147 -0.3434 2.0674 6 6 3.5239 -0.6978 1.1347 7 7 4.0460 -1.3931 2.3138 8 6 5.3752 -1.5537 2.4678 9 8 6.1409 -1.1259 1.6257 10 7 5.8555 -2.1929 3.5528 11 6 7.3001 -2.3728 3.7173 12 6 7.5712 -3.1124 5.0020 13 1 6.7496 -3.4175 5.6331 14 6 8.8681 -3.3986 5.3723 15 7 9.8686 -3.0265 4.6040 16 14 9.2041 -4.3160 6.9644 17 1 9.2203 -5.7771 6.6999 18 1 10.5206 -3.8968 7.5088 19 1 8.1385 -4.0031 7.9503 20 6 1.5563 -2.2029 1.0219 21 6 1.5420 -2.8239 -0.2129 22 6 1.1434 -4.1434 -0.3184 23 6 0.7506 -4.8391 0.8097 24 6 0.7600 -4.2164 2.0438 25 6 1.1628 -2.8983 2.1499 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.0691 1.3485 -0.1863 30 1 1.5032 1.9495 -0.7822 31 1 1.8043 1.8340 0.9683 32 1 3.8412 0.3447 1.1575 33 1 3.9071 -1.1746 0.2324 34 1 3.4350 -1.7378 2.9837 35 1 5.2447 -2.5339 4.2248 36 1 7.6926 -2.9470 2.8781 37 1 7.7863 -1.3978 3.7494 38 1 10.7811 -3.2275 4.8646 39 1 1.8449 -2.2792 -1.0949 40 1 1.1363 -4.6299 -1.2826 41 1 0.4366 -5.8691 0.7269 42 1 0.4527 -4.7597 2.9252 43 1 1.1698 -2.4118 3.1141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426436480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:36 Heat of formation + Delta-G solvation = -22.253074 kcal Electronic energy + Delta-G solvation = -23077.394034 eV Core-core repulsion = 19735.565859 eV Total energy + Delta-G solvation = -3341.828175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24266 -40.34647 -38.33053 -36.23492 -35.56501 -34.31286 -32.54289 -31.71636 -30.16421 -28.80067 -28.04321 -25.51112 -24.24115 -23.78104 -23.11298 -21.85922 -21.10884 -19.77323 -18.07238 -17.91234 -17.57240 -16.76879 -16.75988 -16.28227 -16.15097 -15.86907 -15.30859 -15.22734 -14.90886 -14.80459 -14.62601 -14.17552 -14.02190 -13.92918 -13.55540 -13.33082 -13.13833 -12.89405 -12.79414 -12.68481 -12.59263 -12.33945 -12.21097 -11.84834 -11.71061 -11.46415 -11.28075 -10.79350 -10.28268 -9.75501 -9.60796 -9.56561 -9.37738 -8.26994 -6.43479 0.46221 0.57267 1.44169 1.47294 1.58061 1.80420 2.24595 2.40178 2.85460 3.00155 3.07949 3.54652 3.64200 3.90534 3.97273 4.19441 4.22707 4.31950 4.35748 4.47742 4.58607 4.65136 4.66284 4.73048 4.76964 4.89428 5.04833 5.06028 5.08730 5.13624 5.23251 5.28341 5.45832 5.50163 5.60547 5.65252 5.67655 5.69236 5.86144 6.02288 6.04275 6.17366 6.24296 6.68082 7.25150 7.30169 7.71687 8.85475 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018318 B = 0.003507 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.219057 B = 7981.793484 C = 8959.368105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.544 5.544 3 C 0.017 3.983 4 C 0.127 3.873 5 H 0.067 0.933 6 C 0.152 3.848 7 N -0.728 5.728 8 C 0.693 3.307 9 O -0.648 6.648 10 N -0.722 5.722 11 C 0.286 3.714 12 C -0.554 4.554 13 H 0.084 0.916 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.986 3.014 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.255 1.255 20 C -0.088 4.088 21 C -0.103 4.103 22 C -0.134 4.134 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.125 4.125 26 H 0.032 0.968 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.034 0.966 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.406 0.594 35 H 0.404 0.596 36 H -0.016 1.016 37 H -0.014 1.014 38 H 0.269 0.731 39 H 0.124 0.876 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.475 1.885 -5.752 26.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.269 5.269 3 C -0.131 4.131 4 C 0.018 3.982 5 H 0.085 0.915 6 C 0.027 3.973 7 N -0.386 5.386 8 C 0.393 3.607 9 O -0.531 6.531 10 N -0.376 5.376 11 C 0.162 3.838 12 C -0.592 4.592 13 H 0.102 0.898 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.809 3.191 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.178 1.178 20 C -0.088 4.088 21 C -0.122 4.122 22 C -0.152 4.152 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.143 4.143 26 H 0.050 0.950 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.243 0.757 35 H 0.239 0.761 36 H 0.002 0.998 37 H 0.004 0.996 38 H 0.078 0.922 39 H 0.142 0.858 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.436 2.070 -6.971 25.495 hybrid contribution 0.067 -0.190 1.583 1.596 sum -24.369 1.879 -5.388 25.028 Atomic orbital electron populations 1.22411 0.85527 1.02460 1.01522 1.61879 1.09263 1.14306 1.41405 1.22531 1.01129 0.87995 1.01435 1.20583 0.92203 0.91590 0.93804 0.91495 1.21133 0.92396 0.96476 0.87274 1.44744 1.04102 1.63182 1.26531 1.16240 0.82879 0.79237 0.82362 1.90840 1.58406 1.58066 1.45772 1.45278 1.09442 1.59950 1.22901 1.18412 0.75418 0.94255 0.95679 1.21594 0.93722 1.37837 1.06047 0.89810 1.26072 0.95481 0.96489 1.01559 1.70149 0.99922 1.47049 1.39845 0.85135 0.77856 0.78254 0.77815 1.19637 1.20948 1.17847 1.19700 1.00180 0.94800 0.94146 1.21113 0.98545 0.94815 0.97684 1.21427 0.99584 0.94581 0.99609 1.21464 0.99649 1.00698 0.92824 1.21386 0.99751 0.94883 0.98387 1.21245 0.99552 0.95299 0.98228 0.94964 0.89920 0.91537 0.91796 0.89487 0.94747 0.91818 0.92951 0.75748 0.76091 0.99801 0.99571 0.92247 0.85843 0.84943 0.84520 0.84221 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.27 127.69 1.18 1.59 16 2 N -0.54 -9.85 4.17 -927.71 -3.86 -13.72 16 3 C 0.02 0.28 8.87 127.69 1.13 1.41 16 4 C 0.13 2.56 1.78 44.17 0.08 2.64 16 5 H 0.07 1.20 8.00 -2.39 -0.02 1.18 16 6 C 0.15 4.22 4.75 86.38 0.41 4.63 16 7 N -0.73 -22.48 5.30 -478.53 -2.53 -25.02 16 8 C 0.69 30.21 8.57 179.06 1.53 31.74 16 9 O -0.65 -34.85 16.34 -4.00 -0.07 -34.91 16 10 N -0.72 -32.18 5.55 -482.31 -2.68 -34.86 16 11 C 0.29 16.21 5.43 85.63 0.46 16.68 16 12 C -0.55 -30.62 9.28 25.60 0.24 -30.38 16 13 H 0.08 4.17 7.60 -2.91 -0.02 4.14 16 14 C 0.00 0.20 5.46 84.65 0.46 0.66 16 15 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 16 Si 0.99 42.59 29.54 68.60 2.03 44.62 16 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 20 C -0.09 -1.81 3.42 -19.87 -0.07 -1.88 16 21 C -0.10 -2.24 8.60 22.27 0.19 -2.04 16 22 C -0.13 -2.63 10.05 22.27 0.22 -2.40 16 23 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 24 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 25 C -0.12 -2.29 8.85 22.27 0.20 -2.09 16 26 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 28 H 0.07 1.03 6.55 -2.38 -0.02 1.02 16 29 H 0.06 1.23 6.54 -2.39 -0.02 1.22 16 30 H 0.09 1.12 8.06 -2.39 -0.02 1.10 16 31 H 0.03 0.53 8.12 -2.39 -0.02 0.51 16 32 H 0.06 1.82 6.27 -2.39 -0.01 1.80 16 33 H 0.05 1.72 8.13 -2.38 -0.02 1.70 16 34 H 0.41 9.86 7.50 -92.71 -0.70 9.17 16 35 H 0.40 14.83 8.34 -92.70 -0.77 14.06 16 36 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 37 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.12 2.75 7.71 -2.91 -0.02 2.73 16 40 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 41 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.14 1.92 7.99 -2.91 -0.02 1.90 16 Total: -1.00 -74.48 355.75 -0.79 -75.28 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.46 Total: 28.73 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 6.50 Total: 16.47 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -8.79 Total: -130.18 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.07 Total: -34.91 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -74.48 -0.79 -75.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426436480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.026 kcal (2) G-P(sol) polarization free energy of solvation -74.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds