Wall clock time and date at job start Tue Mar 31 2020 07:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00391 * 2 1 4 4 C 1.46906 * 111.00047 * 123.95438 * 2 1 3 5 5 H 1.08999 * 109.47024 * 211.40320 * 4 2 1 6 6 C 1.52993 * 109.46762 * 331.39917 * 4 2 1 7 7 N 1.46504 * 109.47678 * 295.87409 * 6 4 2 8 8 C 1.34776 * 120.00571 * 173.23341 * 7 6 4 9 9 O 1.21584 * 119.99792 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99796 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99484 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46637 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00516 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99712 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00228 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00140 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46879 * 59.99606 * 16 14 12 18 18 H 1.48492 * 109.47236 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46989 * 300.00003 * 16 14 12 20 20 C 1.50694 * 109.47344 * 91.39945 * 4 2 1 21 21 C 1.38239 * 119.99856 * 318.18947 * 20 4 2 22 22 C 1.38236 * 119.99929 * 179.81283 * 21 20 4 23 23 C 1.38239 * 120.00173 * 0.39203 * 22 21 20 24 24 C 1.38239 * 119.99551 * 359.86291 * 23 22 21 25 25 C 1.38233 * 120.00160 * 359.94788 * 24 23 22 26 26 H 1.08998 * 109.46718 * 69.31079 * 1 2 3 27 27 H 1.08990 * 109.46754 * 309.30762 * 1 2 3 28 28 H 1.08995 * 109.46826 * 189.30311 * 1 2 3 29 29 H 1.09004 * 109.47201 * 51.33458 * 3 2 1 30 30 H 1.08994 * 109.47538 * 171.34148 * 3 2 1 31 31 H 1.09003 * 109.47099 * 291.34298 * 3 2 1 32 32 H 1.09005 * 109.47245 * 55.87344 * 6 4 2 33 33 H 1.09003 * 109.47548 * 175.87462 * 6 4 2 34 34 H 0.97004 * 119.99339 * 353.23878 * 7 6 4 35 35 H 0.96997 * 120.00696 * 0.02562 * 10 8 7 36 36 H 1.08994 * 109.47356 * 299.99848 * 11 10 8 37 37 H 1.08997 * 109.46746 * 60.00666 * 11 10 8 38 38 H 0.96995 * 120.00479 * 179.97438 * 15 14 12 39 39 H 1.08001 * 120.00497 * 359.97438 * 21 20 4 40 40 H 1.08000 * 120.00086 * 180.22943 * 22 21 20 41 41 H 1.07995 * 120.00024 * 179.84027 * 23 22 21 42 42 H 1.08003 * 119.99663 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00079 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 2.9446 -0.3357 1.4573 6 6 0.9959 -0.7126 2.2946 7 7 0.8638 0.6694 2.7627 8 6 -0.0656 0.9819 3.6873 9 8 -0.7942 0.1168 4.1333 10 7 -0.1866 2.2531 4.1181 11 6 -1.1974 2.5929 5.1228 12 6 -1.1258 4.0668 5.4287 13 1 -0.4003 4.6884 4.9249 14 6 -1.9865 4.6218 6.3519 15 7 -2.8702 3.8652 6.9650 16 14 -1.8973 6.4486 6.7317 17 1 -2.1519 7.2250 5.4917 18 1 -2.9210 6.7929 7.7509 19 1 -0.5476 6.7801 7.2550 20 6 2.2079 -2.1992 0.7230 21 6 1.2657 -2.8389 -0.0605 22 6 1.4624 -4.1523 -0.4441 23 6 2.5974 -4.8286 -0.0373 24 6 3.5370 -4.1905 0.7507 25 6 3.3422 -2.8758 1.1309 26 1 -0.3633 0.3631 -0.9614 27 1 -0.3632 0.6510 0.7951 28 1 -0.3633 -1.0141 0.1661 29 1 1.5264 1.9407 0.8024 30 1 3.0742 1.3465 0.1547 31 1 1.7766 1.8446 -0.9572 32 1 0.0260 -1.0750 1.9539 33 1 1.3517 -1.3404 3.1116 34 1 1.4453 1.3595 2.4069 35 1 0.3949 2.9433 3.7625 36 1 -2.1879 2.3497 4.7384 37 1 -1.0107 2.0230 6.0330 38 1 -3.4754 4.2555 7.6147 39 1 0.3772 -2.3118 -0.3753 40 1 0.7282 -4.6510 -1.0594 41 1 2.7498 -5.8555 -0.3348 42 1 4.4236 -4.7190 1.0688 43 1 4.0761 -2.3774 1.7469 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426436482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:41 Heat of formation + Delta-G solvation = 13.385589 kcal Electronic energy + Delta-G solvation = -23065.509898 eV Core-core repulsion = 19725.227131 eV Total energy + Delta-G solvation = -3340.282767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35288 -39.05370 -37.64261 -34.25546 -33.60820 -32.39523 -31.99781 -31.05099 -28.50380 -27.90364 -26.89969 -24.50778 -22.75350 -22.57912 -22.20476 -20.46307 -20.07238 -18.20096 -16.92094 -16.42390 -16.32250 -15.88521 -15.32076 -15.13304 -14.74267 -14.56894 -14.45003 -14.30983 -13.63641 -13.43546 -13.18846 -13.06348 -12.95459 -12.62950 -12.11642 -12.05027 -11.96661 -11.87784 -11.73304 -11.41565 -11.08770 -10.98597 -10.87663 -10.81011 -10.31344 -9.46683 -9.39738 -9.04555 -8.92844 -8.84513 -8.72104 -8.38549 -7.78030 -6.16036 -4.22952 1.20910 1.30462 3.24346 3.24874 3.30294 3.33385 3.58794 3.84298 3.93334 4.31639 4.59757 4.66336 4.76336 4.87103 4.93421 4.98286 5.03171 5.13185 5.19859 5.28058 5.33959 5.39928 5.50199 5.58497 5.67152 5.71594 5.81723 5.85546 5.89301 6.01678 6.33088 6.40308 6.45794 6.75130 6.80440 6.84536 6.89841 7.06894 7.48948 7.52324 7.55872 7.87872 8.02236 8.74414 8.91007 9.30712 9.46372 10.94166 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031350 B = 0.002906 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.934560 B = 9634.249153 C = 9950.032251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.533 5.533 3 C 0.019 3.981 4 C 0.108 3.892 5 H 0.090 0.910 6 C 0.117 3.883 7 N -0.759 5.759 8 C 0.692 3.308 9 O -0.598 6.598 10 N -0.729 5.729 11 C 0.268 3.732 12 C -0.543 4.543 13 H 0.061 0.939 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.063 4.063 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.112 4.112 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.388 0.612 35 H 0.385 0.615 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.084 -11.561 -16.556 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.256 5.256 3 C -0.130 4.130 4 C -0.001 4.001 5 H 0.108 0.892 6 C -0.009 4.009 7 N -0.419 5.419 8 C 0.392 3.608 9 O -0.477 6.477 10 N -0.381 5.381 11 C 0.147 3.853 12 C -0.581 4.581 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.064 4.064 21 C -0.118 4.118 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.131 4.131 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.224 0.776 35 H 0.217 0.783 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.354 -12.550 -16.380 24.051 hybrid contribution 0.282 1.992 0.683 2.125 sum 12.636 -10.558 -15.697 22.749 Atomic orbital electron populations 1.22748 0.86956 1.02420 1.01826 1.62184 1.08528 1.13676 1.41203 1.22592 1.00015 0.88681 1.01667 1.20933 0.98360 0.91883 0.88883 0.89196 1.21767 0.99962 0.83359 0.95850 1.45409 1.40178 1.10049 1.46300 1.16153 0.80931 0.84118 0.79635 1.90880 1.47314 1.48108 1.61385 1.45728 1.40461 1.06261 1.45668 1.18973 0.85750 0.95153 0.85449 1.21181 1.19439 0.92984 1.24534 0.92047 1.24943 0.94904 0.98637 0.95510 1.69964 1.19965 1.35811 1.26519 0.86470 0.77889 0.84344 0.78160 1.20091 1.21051 1.20096 1.19517 0.94824 0.94108 0.97944 1.21227 0.99279 0.94325 0.96979 1.21164 0.97740 0.94858 1.00308 1.21139 0.94662 0.99778 0.98591 1.21073 0.99364 0.94865 0.98701 1.21001 0.97151 0.94892 1.00059 0.91440 0.93472 0.90857 0.94923 0.91339 0.90941 0.90424 0.91703 0.77648 0.78308 0.95771 0.95755 0.92378 0.85381 0.86223 0.86383 0.86212 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 7.67 60.07 0.46 0.55 16 2 N -0.53 -5.42 4.53 -244.60 -1.11 -6.53 16 3 C 0.02 0.17 9.10 60.06 0.55 0.71 16 4 C 0.11 1.13 2.27 -68.87 -0.16 0.98 16 5 H 0.09 0.85 7.29 -51.93 -0.38 0.47 16 6 C 0.12 1.57 4.35 -4.04 -0.02 1.55 16 7 N -0.76 -11.33 4.02 -65.23 -0.26 -11.59 16 8 C 0.69 14.35 8.57 -86.92 -0.74 13.60 16 9 O -0.60 -15.12 16.32 5.29 0.09 -15.03 16 10 N -0.73 -15.66 5.55 -66.41 -0.37 -16.03 16 11 C 0.27 7.22 5.43 -5.19 -0.03 7.19 16 12 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 13 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 16 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.06 -0.66 4.95 -104.63 -0.52 -1.18 16 21 C -0.10 -1.05 9.14 -39.58 -0.36 -1.41 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.11 -1.09 9.67 -39.59 -0.38 -1.47 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.62 6.25 -51.93 -0.32 0.29 16 28 H 0.07 0.79 4.39 -51.93 -0.23 0.56 16 29 H 0.03 0.30 5.71 -51.93 -0.30 0.01 16 30 H 0.07 0.52 7.71 -51.93 -0.40 0.12 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.15 5.92 -51.93 -0.31 0.84 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.39 4.77 5.83 -40.82 -0.24 4.53 16 35 H 0.38 7.07 8.33 -40.82 -0.34 6.72 16 36 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.13 1.29 4.93 -52.49 -0.26 1.03 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.12 0.97 8.03 -52.49 -0.42 0.55 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -33.06 345.78 -9.65 -42.71 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.11 Total: 8.36 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.81 Total: 2.55 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -1.00 Total: -59.66 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.09 Total: -15.03 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.06 -9.65 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426436482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.091 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds