Wall clock time and date at job start Tue Mar 31 2020 07:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00391 * 2 1 4 4 C 1.46906 * 111.00047 * 123.95438 * 2 1 3 5 5 H 1.08999 * 109.47024 * 211.40320 * 4 2 1 6 6 C 1.52993 * 109.46762 * 331.39917 * 4 2 1 7 7 N 1.46504 * 109.47678 * 295.87409 * 6 4 2 8 8 C 1.34776 * 120.00571 * 173.23341 * 7 6 4 9 9 O 1.21584 * 119.99792 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99796 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99484 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46637 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00516 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99712 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00228 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00140 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46879 * 59.99606 * 16 14 12 18 18 H 1.48492 * 109.47236 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46989 * 300.00003 * 16 14 12 20 20 C 1.50694 * 109.47344 * 91.39945 * 4 2 1 21 21 C 1.38239 * 119.99856 * 318.18947 * 20 4 2 22 22 C 1.38236 * 119.99929 * 179.81283 * 21 20 4 23 23 C 1.38239 * 120.00173 * 0.39203 * 22 21 20 24 24 C 1.38239 * 119.99551 * 359.86291 * 23 22 21 25 25 C 1.38233 * 120.00160 * 359.94788 * 24 23 22 26 26 H 1.08998 * 109.46718 * 69.31079 * 1 2 3 27 27 H 1.08990 * 109.46754 * 309.30762 * 1 2 3 28 28 H 1.08995 * 109.46826 * 189.30311 * 1 2 3 29 29 H 1.09004 * 109.47201 * 51.33458 * 3 2 1 30 30 H 1.08994 * 109.47538 * 171.34148 * 3 2 1 31 31 H 1.09003 * 109.47099 * 291.34298 * 3 2 1 32 32 H 1.09005 * 109.47245 * 55.87344 * 6 4 2 33 33 H 1.09003 * 109.47548 * 175.87462 * 6 4 2 34 34 H 0.97004 * 119.99339 * 353.23878 * 7 6 4 35 35 H 0.96997 * 120.00696 * 0.02562 * 10 8 7 36 36 H 1.08994 * 109.47356 * 299.99848 * 11 10 8 37 37 H 1.08997 * 109.46746 * 60.00666 * 11 10 8 38 38 H 0.96995 * 120.00479 * 179.97438 * 15 14 12 39 39 H 1.08001 * 120.00497 * 359.97438 * 21 20 4 40 40 H 1.08000 * 120.00086 * 180.22943 * 22 21 20 41 41 H 1.07995 * 120.00024 * 179.84027 * 23 22 21 42 42 H 1.08003 * 119.99663 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00079 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 2.9446 -0.3357 1.4573 6 6 0.9959 -0.7126 2.2946 7 7 0.8638 0.6694 2.7627 8 6 -0.0656 0.9819 3.6873 9 8 -0.7942 0.1168 4.1333 10 7 -0.1866 2.2531 4.1181 11 6 -1.1974 2.5929 5.1228 12 6 -1.1258 4.0668 5.4287 13 1 -0.4003 4.6884 4.9249 14 6 -1.9865 4.6218 6.3519 15 7 -2.8702 3.8652 6.9650 16 14 -1.8973 6.4486 6.7317 17 1 -2.1519 7.2250 5.4917 18 1 -2.9210 6.7929 7.7509 19 1 -0.5476 6.7801 7.2550 20 6 2.2079 -2.1992 0.7230 21 6 1.2657 -2.8389 -0.0605 22 6 1.4624 -4.1523 -0.4441 23 6 2.5974 -4.8286 -0.0373 24 6 3.5370 -4.1905 0.7507 25 6 3.3422 -2.8758 1.1309 26 1 -0.3633 0.3631 -0.9614 27 1 -0.3632 0.6510 0.7951 28 1 -0.3633 -1.0141 0.1661 29 1 1.5264 1.9407 0.8024 30 1 3.0742 1.3465 0.1547 31 1 1.7766 1.8446 -0.9572 32 1 0.0260 -1.0750 1.9539 33 1 1.3517 -1.3404 3.1116 34 1 1.4453 1.3595 2.4069 35 1 0.3949 2.9433 3.7625 36 1 -2.1879 2.3497 4.7384 37 1 -1.0107 2.0230 6.0330 38 1 -3.4754 4.2555 7.6147 39 1 0.3772 -2.3118 -0.3753 40 1 0.7282 -4.6510 -1.0594 41 1 2.7498 -5.8555 -0.3348 42 1 4.4236 -4.7190 1.0688 43 1 4.0761 -2.3774 1.7469 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426436482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:40 Heat of formation + Delta-G solvation = -10.066044 kcal Electronic energy + Delta-G solvation = -23066.526837 eV Core-core repulsion = 19725.227131 eV Total energy + Delta-G solvation = -3341.299706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47385 -40.35011 -38.61183 -36.19445 -35.07297 -34.29137 -32.92838 -31.75074 -29.87327 -28.77063 -28.50456 -25.70843 -24.37192 -23.43278 -23.13887 -21.97712 -21.18235 -19.84559 -18.14435 -17.70551 -17.45548 -17.36260 -16.61483 -16.38455 -16.16538 -15.86888 -15.45243 -15.23831 -14.97460 -14.84744 -14.35731 -14.17832 -14.02881 -13.79367 -13.75373 -13.41914 -12.92930 -12.90582 -12.83808 -12.68192 -12.60960 -12.35396 -12.24293 -11.82994 -11.57957 -11.51407 -11.30843 -10.80770 -10.39788 -9.75376 -9.68844 -9.59863 -9.27775 -8.29117 -6.46015 0.47413 0.59206 1.42727 1.47266 1.55273 1.80285 2.18557 2.38618 2.80473 3.05687 3.06576 3.43325 3.70028 3.89642 3.94489 4.13387 4.21733 4.28275 4.34958 4.44346 4.52406 4.59850 4.64612 4.69349 4.79966 4.86468 5.02562 5.03032 5.07166 5.14873 5.24962 5.25343 5.41214 5.46635 5.62626 5.63496 5.69837 5.71534 5.83114 5.93401 6.06156 6.15923 6.19953 6.65196 7.20888 7.25581 7.66219 8.83056 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031350 B = 0.002906 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.934560 B = 9634.249153 C = 9950.032251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.531 5.531 3 C 0.015 3.985 4 C 0.122 3.878 5 H 0.107 0.893 6 C 0.119 3.881 7 N -0.731 5.731 8 C 0.691 3.309 9 O -0.647 6.647 10 N -0.722 5.722 11 C 0.287 3.713 12 C -0.556 4.556 13 H 0.084 0.916 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.986 3.014 17 H -0.262 1.262 18 H -0.285 1.285 19 H -0.262 1.262 20 C -0.079 4.079 21 C -0.116 4.116 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.121 4.121 26 H 0.078 0.922 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.406 0.594 35 H 0.404 0.596 36 H -0.015 1.015 37 H -0.015 1.015 38 H 0.269 0.731 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.361 -10.566 -17.875 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.254 5.254 3 C -0.133 4.133 4 C 0.013 3.987 5 H 0.125 0.875 6 C -0.007 4.007 7 N -0.391 5.391 8 C 0.391 3.609 9 O -0.529 6.529 10 N -0.376 5.376 11 C 0.164 3.836 12 C -0.594 4.594 13 H 0.102 0.898 14 C -0.196 4.196 15 N -0.569 5.569 16 Si 0.809 3.191 17 H -0.186 1.186 18 H -0.211 1.211 19 H -0.186 1.186 20 C -0.080 4.080 21 C -0.134 4.134 22 C -0.151 4.151 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.139 4.139 26 H 0.097 0.903 27 H 0.040 0.960 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.244 0.756 35 H 0.239 0.761 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.078 0.922 39 H 0.143 0.857 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.709 -11.545 -17.770 25.795 hybrid contribution -0.407 1.548 1.027 1.902 sum 14.302 -9.996 -16.743 24.183 Atomic orbital electron populations 1.22684 0.87595 1.01733 1.01465 1.62222 1.07839 1.14586 1.40752 1.22698 1.00987 0.87659 1.01938 1.20852 0.97811 0.92548 0.87511 0.87473 1.21890 1.00292 0.81780 0.96724 1.45133 1.38422 1.11394 1.44131 1.16303 0.81309 0.83191 0.80078 1.90847 1.49443 1.49379 1.63251 1.45300 1.39929 1.07306 1.45015 1.18399 0.85207 0.95207 0.84831 1.21559 1.20009 0.92972 1.24829 0.89819 1.26072 0.94143 1.04305 0.95046 1.70134 1.21016 1.38479 1.27302 0.85189 0.78325 0.77315 0.78270 1.18618 1.21090 1.18634 1.19579 0.95581 0.94079 0.98792 1.21345 0.99393 0.95065 0.97620 1.21422 0.98505 0.94639 1.00527 1.21474 0.94217 1.00814 0.98042 1.21405 1.00122 0.94752 0.98292 1.21253 0.97161 0.95409 1.00107 0.90296 0.95977 0.91141 0.95541 0.89564 0.90121 0.92011 0.92651 0.75582 0.76130 0.99713 0.99727 0.92204 0.85729 0.84776 0.84230 0.84065 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 7.67 127.69 0.98 1.26 16 2 N -0.53 -10.07 4.53 -927.77 -4.21 -14.28 16 3 C 0.02 0.23 9.10 127.69 1.16 1.39 16 4 C 0.12 2.39 2.27 44.16 0.10 2.49 16 5 H 0.11 1.75 7.29 -2.39 -0.02 1.73 16 6 C 0.12 3.19 4.35 86.38 0.38 3.57 16 7 N -0.73 -21.61 4.02 -478.54 -1.92 -23.53 16 8 C 0.69 29.35 8.57 179.06 1.53 30.88 16 9 O -0.65 -34.20 16.32 -3.98 -0.06 -34.26 16 10 N -0.72 -31.49 5.55 -482.30 -2.68 -34.16 16 11 C 0.29 16.08 5.43 85.63 0.46 16.54 16 12 C -0.56 -30.42 9.28 25.60 0.24 -30.18 16 13 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 14 C 0.00 0.22 5.46 84.66 0.46 0.69 16 15 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 16 Si 0.99 42.27 29.54 68.60 2.03 44.30 16 17 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 18 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 20 C -0.08 -1.58 4.95 -19.87 -0.10 -1.68 16 21 C -0.12 -2.36 9.14 22.27 0.20 -2.16 16 22 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 23 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 24 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 25 C -0.12 -2.12 9.67 22.27 0.22 -1.90 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.02 0.58 6.25 -2.39 -0.01 0.56 16 28 H 0.07 1.56 4.39 -2.39 -0.01 1.55 16 29 H 0.03 0.44 5.71 -2.38 -0.01 0.43 16 30 H 0.09 1.04 7.71 -2.39 -0.02 1.02 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.90 5.92 -2.38 -0.01 1.88 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.41 9.37 5.83 -92.71 -0.54 8.83 16 35 H 0.40 14.45 8.33 -92.71 -0.77 13.68 16 36 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 37 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.13 2.52 4.93 -2.91 -0.01 2.50 16 40 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 41 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.14 1.87 8.03 -2.91 -0.02 1.85 16 Total: -1.00 -73.97 345.78 -0.54 -74.51 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: -0.28 Total: 28.47 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 6.31 Total: 15.22 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -8.52 Total: -128.23 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.06 Total: -34.26 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -73.97 -0.54 -74.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426436482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.443 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds