Wall clock time and date at job start Tue Mar 31 2020 07:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99902 * 2 1 4 4 C 1.53001 * 109.46976 * 269.99850 * 3 2 1 5 5 N 1.46504 * 109.47367 * 180.02562 * 4 3 2 6 6 C 1.46498 * 119.99776 * 269.99917 * 5 4 3 7 7 C 1.39675 * 119.99988 * 89.99451 * 5 4 3 8 8 C 1.38914 * 120.07317 * 180.02562 * 7 5 4 9 9 C 1.38100 * 119.92419 * 179.97438 * 8 7 5 10 10 C 1.38288 * 120.07489 * 359.97438 * 9 8 7 11 11 C 1.38283 * 120.14964 * 0.27921 * 10 9 8 12 12 C 1.38104 * 120.07445 * 359.44998 * 11 10 9 13 13 C 1.34776 * 120.00260 * 179.97438 * 2 1 3 14 14 O 1.21593 * 119.99952 * 180.02562 * 13 2 1 15 15 N 1.34777 * 120.00107 * 0.02562 * 13 2 1 16 16 C 1.46498 * 120.00046 * 180.02562 * 15 13 2 17 17 C 1.50696 * 109.46877 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00307 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99957 * 180.02562 * 17 16 15 20 20 N 1.31522 * 120.00034 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00188 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47021 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.47116 * 120.00024 * 21 19 17 24 24 H 1.48503 * 109.47523 * 239.99884 * 21 19 17 25 25 H 1.09000 * 109.46587 * 90.00741 * 1 2 3 26 26 H 1.08997 * 109.46822 * 209.99788 * 1 2 3 27 27 H 1.08994 * 109.47677 * 330.00537 * 1 2 3 28 28 H 1.08996 * 109.47348 * 149.99905 * 3 2 1 29 29 H 1.08997 * 109.47383 * 29.99156 * 3 2 1 30 30 H 1.09001 * 109.47478 * 59.99708 * 4 3 2 31 31 H 1.09007 * 109.46925 * 299.99538 * 4 3 2 32 32 H 1.08994 * 109.47097 * 269.99854 * 6 5 4 33 33 H 1.09001 * 109.47265 * 29.99978 * 6 5 4 34 34 H 1.08996 * 109.46960 * 149.99772 * 6 5 4 35 35 H 1.07999 * 120.03435 * 359.97438 * 8 7 5 36 36 H 1.08000 * 119.95830 * 180.02562 * 9 8 7 37 37 H 1.08002 * 119.92149 * 179.97438 * 10 9 8 38 38 H 1.08001 * 119.96059 * 179.69879 * 11 10 9 39 39 H 1.07999 * 120.04050 * 180.27354 * 12 11 10 40 40 H 0.97001 * 119.99566 * 0.02562 * 15 13 2 41 41 H 1.09004 * 109.46785 * 300.00195 * 16 15 13 42 42 H 1.09002 * 109.47219 * 59.99978 * 16 15 13 43 43 H 0.96997 * 119.99932 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1855 2.9789 -1.4426 6 6 2.4535 4.2478 -1.4425 7 6 4.5822 2.9783 -1.4427 8 6 5.2788 4.1802 -1.4423 9 6 6.6598 4.1760 -1.4418 10 6 7.3492 2.9772 -1.4413 11 6 6.6589 1.7790 -1.4470 12 6 5.2779 1.7759 -1.4418 13 6 2.1389 -1.1672 0.0005 14 8 3.3548 -1.1671 0.0010 15 7 1.4651 -2.3344 0.0005 16 6 2.1976 -3.6031 0.0017 17 6 1.2184 -4.7485 0.0008 18 1 0.1566 -4.5512 -0.0001 19 6 1.6780 -6.0484 0.0021 20 7 2.9711 -6.2887 0.0037 21 14 0.4642 -7.4683 0.0018 22 1 -0.9216 -6.9348 -0.0007 23 1 0.6760 -8.3003 -1.2100 24 1 0.6733 -8.2987 1.2150 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 3.1498 1.1385 0.5138 29 1 1.6083 2.0285 0.5137 30 1 1.5001 1.8407 -1.9564 31 1 3.0417 0.9507 -1.9563 32 1 2.2718 4.5626 -2.4701 33 1 1.5011 4.1179 -0.9286 34 1 3.0429 5.0072 -0.9288 35 1 4.7410 5.1167 -1.4423 36 1 7.2020 5.1101 -1.4410 37 1 8.4293 2.9769 -1.4413 38 1 7.2004 0.8446 -1.4515 39 1 4.7393 0.8398 -1.4418 40 1 0.4951 -2.3344 -0.0002 41 1 2.8250 -3.6611 -0.8878 42 1 2.8236 -3.6604 0.8922 43 1 3.2944 -7.2032 0.0043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426451077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:49 Heat of formation + Delta-G solvation = 13.624740 kcal Electronic energy + Delta-G solvation = -22941.012550 eV Core-core repulsion = 19600.740153 eV Total energy + Delta-G solvation = -3340.272396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83164 -39.22214 -36.59719 -34.99713 -34.20969 -32.37119 -31.15117 -30.24184 -29.28347 -27.23036 -26.67458 -25.36608 -23.48893 -22.24663 -21.87460 -20.52378 -19.28563 -18.00707 -17.63485 -16.17930 -16.01616 -15.66538 -15.47729 -15.07187 -14.67420 -14.52252 -14.34894 -13.68955 -13.67888 -13.25198 -13.24939 -13.03846 -12.76412 -12.56639 -12.34006 -12.31642 -12.10630 -11.85891 -11.73010 -11.31191 -10.98243 -10.91930 -10.89156 -10.63780 -10.28957 -9.93215 -9.38742 -9.34220 -8.79869 -8.73161 -8.49628 -7.76860 -7.23346 -6.15180 -4.21715 1.56124 1.70037 2.85046 3.23903 3.30561 3.33456 3.43087 3.88960 4.01765 4.31749 4.71028 4.83921 4.89055 5.05351 5.10636 5.13391 5.17774 5.20993 5.30083 5.35674 5.40408 5.51911 5.56036 5.58159 5.68729 5.71377 5.77951 5.86873 6.08791 6.14787 6.39983 6.59442 6.71007 6.79091 6.96534 7.08814 7.28196 7.51030 7.53039 7.53701 7.57760 7.84757 8.02077 8.75695 8.89900 9.31496 9.47618 10.95086 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.003212 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.989728 B = 8715.196407 C = 9790.716014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.642 5.642 3 C 0.120 3.880 4 C 0.108 3.892 5 N -0.632 5.632 6 C 0.095 3.905 7 C 0.212 3.788 8 C -0.202 4.202 9 C -0.081 4.081 10 C -0.182 4.182 11 C -0.071 4.071 12 C -0.185 4.185 13 C 0.693 3.307 14 O -0.594 6.594 15 N -0.728 5.728 16 C 0.266 3.734 17 C -0.541 4.541 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.386 0.614 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 21.801 -2.653 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.382 5.382 3 C -0.005 4.005 4 C -0.016 4.016 5 N -0.343 5.343 6 C -0.048 4.048 7 C 0.111 3.889 8 C -0.224 4.224 9 C -0.099 4.099 10 C -0.202 4.202 11 C -0.090 4.090 12 C -0.206 4.206 13 C 0.394 3.606 14 O -0.473 6.473 15 N -0.381 5.381 16 C 0.145 3.855 17 C -0.580 4.580 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.220 0.780 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.170 21.587 -2.649 21.781 hybrid contribution -1.207 -0.835 0.025 1.468 sum -2.377 20.752 -2.625 21.052 Atomic orbital electron populations 1.21662 0.80398 1.02708 1.01318 1.47017 1.05916 1.05006 1.80275 1.21618 0.98140 0.83927 0.96835 1.21876 0.96594 0.85521 0.97650 1.46356 1.02166 1.05304 1.80522 1.21593 0.96458 0.85832 1.00902 1.17866 0.82891 0.93957 0.94199 1.20609 0.94401 0.96055 1.11359 1.20811 0.93467 0.97698 0.97974 1.20906 0.99455 0.92564 1.07232 1.20978 0.93682 0.98018 0.96319 1.21000 0.94697 0.97119 1.07834 1.16118 0.85569 0.80469 0.78441 1.90872 1.11611 1.86162 1.58635 1.45869 1.09671 1.05669 1.76908 1.18987 0.92009 0.76901 0.97611 1.21247 0.92962 0.90721 1.53025 0.91996 1.24945 0.95395 0.98903 0.94784 1.69990 1.12531 1.20690 1.48998 0.86370 0.80910 0.81909 0.77746 1.19683 1.20807 1.20808 0.93134 0.91174 0.91555 0.89634 0.91317 0.91036 0.89911 0.93619 0.91707 0.91471 0.86433 0.86638 0.86770 0.86107 0.84925 0.77971 0.95724 0.95755 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.25 59.84 0.61 1.53 16 2 N -0.64 -9.77 2.87 -187.36 -0.54 -10.31 16 3 C 0.12 1.61 5.78 -4.04 -0.02 1.59 16 4 C 0.11 1.35 5.48 -4.04 -0.02 1.33 16 5 N -0.63 -7.31 3.01 -179.62 -0.54 -7.85 16 6 C 0.10 0.77 10.19 59.85 0.61 1.38 16 7 C 0.21 2.82 6.55 -83.79 -0.55 2.27 16 8 C -0.20 -2.35 9.21 -39.38 -0.36 -2.71 16 9 C -0.08 -0.91 10.04 -39.61 -0.40 -1.30 16 10 C -0.18 -2.20 10.04 -39.55 -0.40 -2.60 16 11 C -0.07 -0.99 10.04 -39.61 -0.40 -1.39 16 12 C -0.18 -2.78 9.21 -39.38 -0.36 -3.14 16 13 C 0.69 14.34 8.28 -86.92 -0.72 13.62 16 14 O -0.59 -14.59 15.92 5.28 0.08 -14.51 16 15 N -0.73 -15.69 5.41 -66.41 -0.36 -16.05 16 16 C 0.27 7.14 5.43 -5.20 -0.03 7.11 16 17 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 18 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -26.16 13.29 55.43 0.74 -25.42 16 21 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 27 H 0.07 0.56 7.89 -51.93 -0.41 0.15 16 28 H 0.09 1.41 7.42 -51.93 -0.39 1.02 16 29 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 30 H 0.07 0.76 8.07 -51.93 -0.42 0.35 16 31 H 0.08 1.26 6.20 -51.92 -0.32 0.94 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.07 0.49 6.20 -51.93 -0.32 0.16 16 35 H 0.12 1.11 6.14 -52.49 -0.32 0.79 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.11 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.13 2.27 6.14 -52.49 -0.32 1.95 16 40 H 0.39 7.18 6.05 -40.82 -0.25 6.93 16 41 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -33.01 355.68 -9.13 -42.14 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.40 Total: 6.50 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -2.45 Total: 4.31 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.70 Total: -59.63 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.08 Total: -14.51 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.01 -9.13 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426451077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.768 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds