Wall clock time and date at job start Tue Mar 31 2020 07:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99902 * 2 1 4 4 C 1.53001 * 109.46976 * 269.99850 * 3 2 1 5 5 N 1.46504 * 109.47367 * 180.02562 * 4 3 2 6 6 C 1.46498 * 119.99776 * 269.99917 * 5 4 3 7 7 C 1.39675 * 119.99988 * 89.99451 * 5 4 3 8 8 C 1.38914 * 120.07317 * 180.02562 * 7 5 4 9 9 C 1.38100 * 119.92419 * 179.97438 * 8 7 5 10 10 C 1.38288 * 120.07489 * 359.97438 * 9 8 7 11 11 C 1.38283 * 120.14964 * 0.27921 * 10 9 8 12 12 C 1.38104 * 120.07445 * 359.44998 * 11 10 9 13 13 C 1.34776 * 120.00260 * 179.97438 * 2 1 3 14 14 O 1.21593 * 119.99952 * 180.02562 * 13 2 1 15 15 N 1.34777 * 120.00107 * 0.02562 * 13 2 1 16 16 C 1.46498 * 120.00046 * 180.02562 * 15 13 2 17 17 C 1.50696 * 109.46877 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00307 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99957 * 180.02562 * 17 16 15 20 20 N 1.31522 * 120.00034 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00188 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47021 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.47116 * 120.00024 * 21 19 17 24 24 H 1.48503 * 109.47523 * 239.99884 * 21 19 17 25 25 H 1.09000 * 109.46587 * 90.00741 * 1 2 3 26 26 H 1.08997 * 109.46822 * 209.99788 * 1 2 3 27 27 H 1.08994 * 109.47677 * 330.00537 * 1 2 3 28 28 H 1.08996 * 109.47348 * 149.99905 * 3 2 1 29 29 H 1.08997 * 109.47383 * 29.99156 * 3 2 1 30 30 H 1.09001 * 109.47478 * 59.99708 * 4 3 2 31 31 H 1.09007 * 109.46925 * 299.99538 * 4 3 2 32 32 H 1.08994 * 109.47097 * 269.99854 * 6 5 4 33 33 H 1.09001 * 109.47265 * 29.99978 * 6 5 4 34 34 H 1.08996 * 109.46960 * 149.99772 * 6 5 4 35 35 H 1.07999 * 120.03435 * 359.97438 * 8 7 5 36 36 H 1.08000 * 119.95830 * 180.02562 * 9 8 7 37 37 H 1.08002 * 119.92149 * 179.97438 * 10 9 8 38 38 H 1.08001 * 119.96059 * 179.69879 * 11 10 9 39 39 H 1.07999 * 120.04050 * 180.27354 * 12 11 10 40 40 H 0.97001 * 119.99566 * 0.02562 * 15 13 2 41 41 H 1.09004 * 109.46785 * 300.00195 * 16 15 13 42 42 H 1.09002 * 109.47219 * 59.99978 * 16 15 13 43 43 H 0.96997 * 119.99932 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1855 2.9789 -1.4426 6 6 2.4535 4.2478 -1.4425 7 6 4.5822 2.9783 -1.4427 8 6 5.2788 4.1802 -1.4423 9 6 6.6598 4.1760 -1.4418 10 6 7.3492 2.9772 -1.4413 11 6 6.6589 1.7790 -1.4470 12 6 5.2779 1.7759 -1.4418 13 6 2.1389 -1.1672 0.0005 14 8 3.3548 -1.1671 0.0010 15 7 1.4651 -2.3344 0.0005 16 6 2.1976 -3.6031 0.0017 17 6 1.2184 -4.7485 0.0008 18 1 0.1566 -4.5512 -0.0001 19 6 1.6780 -6.0484 0.0021 20 7 2.9711 -6.2887 0.0037 21 14 0.4642 -7.4683 0.0018 22 1 -0.9216 -6.9348 -0.0007 23 1 0.6760 -8.3003 -1.2100 24 1 0.6733 -8.2987 1.2150 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 3.1498 1.1385 0.5138 29 1 1.6083 2.0285 0.5137 30 1 1.5001 1.8407 -1.9564 31 1 3.0417 0.9507 -1.9563 32 1 2.2718 4.5626 -2.4701 33 1 1.5011 4.1179 -0.9286 34 1 3.0429 5.0072 -0.9288 35 1 4.7410 5.1167 -1.4423 36 1 7.2020 5.1101 -1.4410 37 1 8.4293 2.9769 -1.4413 38 1 7.2004 0.8446 -1.4515 39 1 4.7393 0.8398 -1.4418 40 1 0.4951 -2.3344 -0.0002 41 1 2.8250 -3.6611 -0.8878 42 1 2.8236 -3.6604 0.8922 43 1 3.2944 -7.2032 0.0043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426451077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:48 Heat of formation + Delta-G solvation = -7.673715 kcal Electronic energy + Delta-G solvation = -22941.936120 eV Core-core repulsion = 19600.740153 eV Total energy + Delta-G solvation = -3341.195967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20832 -40.39190 -37.69479 -36.30457 -36.14913 -34.35739 -32.19257 -31.30543 -30.25633 -29.11883 -27.65829 -26.52426 -24.94215 -23.84020 -22.96421 -21.51907 -20.96201 -19.50898 -18.64747 -18.00780 -17.51949 -16.95522 -16.58311 -16.43754 -16.22109 -15.64153 -15.43869 -14.96942 -14.92274 -14.57235 -14.46503 -14.29494 -14.06762 -13.86335 -13.69600 -13.44471 -13.27211 -13.14253 -12.86338 -12.79952 -12.75306 -12.26092 -12.20519 -11.99821 -11.63520 -11.45066 -11.16877 -10.85563 -10.82010 -10.04872 -9.80703 -9.48074 -8.29002 -8.18246 -6.45797 0.55443 0.71506 1.42706 1.44693 1.57472 1.67510 2.19309 2.31542 2.40816 3.01507 3.05997 3.27113 3.81936 3.99013 4.09367 4.15217 4.24414 4.33232 4.40385 4.43365 4.61437 4.63458 4.66361 4.69609 4.76896 4.88876 4.89729 4.95126 5.00587 5.07005 5.19085 5.25688 5.39878 5.46399 5.56179 5.64263 5.70715 5.78262 5.84307 6.00680 6.08557 6.36232 6.59345 6.66106 7.18395 7.24793 7.70141 8.83719 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.003212 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.989728 B = 8715.196407 C = 9790.716014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.630 5.630 3 C 0.124 3.876 4 C 0.118 3.882 5 N -0.633 5.633 6 C 0.090 3.910 7 C 0.202 3.798 8 C -0.199 4.199 9 C -0.076 4.076 10 C -0.187 4.187 11 C -0.093 4.093 12 C -0.217 4.217 13 C 0.687 3.313 14 O -0.643 6.643 15 N -0.722 5.722 16 C 0.286 3.714 17 C -0.553 4.553 18 H 0.084 0.916 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.987 3.013 22 H -0.251 1.251 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.046 0.954 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.404 0.596 41 H -0.017 1.017 42 H -0.018 1.018 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.995 24.404 -2.678 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.368 5.368 3 C 0.000 4.000 4 C -0.007 4.007 5 N -0.344 5.344 6 C -0.052 4.052 7 C 0.100 3.900 8 C -0.221 4.221 9 C -0.094 4.094 10 C -0.207 4.207 11 C -0.111 4.111 12 C -0.239 4.239 13 C 0.388 3.612 14 O -0.526 6.526 15 N -0.378 5.378 16 C 0.163 3.837 17 C -0.591 4.591 18 H 0.102 0.898 19 C -0.197 4.197 20 N -0.570 5.570 21 Si 0.810 3.190 22 H -0.175 1.175 23 H -0.205 1.205 24 H -0.204 1.204 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.124 0.876 28 H 0.064 0.936 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.153 0.847 38 H 0.131 0.869 39 H 0.114 0.886 40 H 0.241 0.759 41 H 0.001 0.999 42 H 0.000 1.000 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.239 24.276 -2.678 24.788 hybrid contribution -0.239 -1.518 0.032 1.537 sum -4.477 22.757 -2.646 23.344 Atomic orbital electron populations 1.22019 0.76984 1.04560 1.03167 1.47004 1.07910 1.03519 1.78373 1.21724 0.96969 0.83696 0.97650 1.21666 0.97049 0.85397 0.96625 1.46487 1.01641 1.06156 1.80120 1.21859 0.97138 0.84113 1.02075 1.18031 0.83977 0.93814 0.94157 1.20964 0.94803 0.96278 1.10094 1.21257 0.93618 0.98550 0.96021 1.21167 1.00583 0.92153 1.06805 1.21086 0.93561 0.98981 0.97509 1.20859 0.95351 0.96841 1.10862 1.16356 0.85091 0.81691 0.78094 1.90846 1.14158 1.87106 1.60458 1.45441 1.10230 1.04512 1.77580 1.18384 0.91826 0.79780 0.93712 1.21608 0.93801 0.90845 1.52821 0.89815 1.26094 0.97414 1.02325 0.93852 1.70161 1.15204 1.21647 1.49995 0.85081 0.78812 0.77443 0.77672 1.17464 1.20459 1.20443 0.91218 0.91460 0.87605 0.93571 0.87173 0.88271 0.93944 0.92615 0.89564 0.90259 0.83439 0.83140 0.84728 0.86926 0.88606 0.75913 0.99912 0.99961 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.42 10.25 127.77 1.31 2.72 16 2 N -0.63 -18.92 2.87 -864.93 -2.49 -21.40 16 3 C 0.12 3.29 5.78 86.38 0.50 3.78 16 4 C 0.12 2.92 5.48 86.38 0.47 3.39 16 5 N -0.63 -13.94 3.01 -722.18 -2.17 -16.11 16 6 C 0.09 1.13 10.19 127.77 1.30 2.43 16 7 C 0.20 5.41 6.55 38.21 0.25 5.66 16 8 C -0.20 -4.23 9.21 22.40 0.21 -4.02 16 9 C -0.08 -1.54 10.04 22.25 0.22 -1.32 16 10 C -0.19 -4.50 10.04 22.29 0.22 -4.28 16 11 C -0.09 -2.81 10.04 22.25 0.22 -2.59 16 12 C -0.22 -7.19 9.21 22.40 0.21 -6.99 16 13 C 0.69 29.89 8.28 179.05 1.48 31.37 16 14 O -0.64 -34.54 15.92 -4.01 -0.06 -34.60 16 15 N -0.72 -32.31 5.41 -482.29 -2.61 -34.92 16 16 C 0.29 16.34 5.43 85.63 0.46 16.80 16 17 C -0.55 -30.61 9.28 25.60 0.24 -30.37 16 18 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 19 C 0.00 0.15 5.46 84.65 0.46 0.61 16 20 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 21 Si 0.99 42.65 29.54 68.60 2.03 44.68 16 22 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.35 6.36 -2.39 -0.02 1.33 16 27 H 0.11 1.25 7.89 -2.39 -0.02 1.23 16 28 H 0.05 1.61 7.42 -2.39 -0.02 1.59 16 29 H 0.11 2.02 7.89 -2.39 -0.02 2.00 16 30 H 0.10 1.89 8.07 -2.39 -0.02 1.87 16 31 H 0.04 1.41 6.20 -2.38 -0.01 1.39 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.74 8.07 -2.39 -0.02 0.72 16 34 H 0.08 0.82 6.20 -2.39 -0.01 0.81 16 35 H 0.15 2.19 6.14 -2.91 -0.02 2.18 16 36 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.11 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.10 3.83 6.14 -2.91 -0.02 3.81 16 40 H 0.40 14.91 6.05 -92.71 -0.56 14.34 16 41 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 42 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 43 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -79.24 355.68 2.99 -76.25 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.44 Total: 25.80 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 7.56 Total: 17.20 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -6.98 Total: -129.33 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.06 Total: -34.60 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -79.24 2.99 -76.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426451077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.579 kcal (2) G-P(sol) polarization free energy of solvation -79.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds