Wall clock time and date at job start Tue Mar 31 2020 07:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.53004 * 109.46619 * 66.04574 * 3 2 1 5 5 N 1.46507 * 109.46706 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99641 * 179.97438 * 5 4 3 7 7 O 1.21586 * 120.00291 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99711 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00038 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47189 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00142 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99981 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99672 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99886 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47003 * 90.00304 * 14 12 10 16 16 H 1.48503 * 109.47182 * 210.00302 * 14 12 10 17 17 H 1.48498 * 109.47524 * 330.00330 * 14 12 10 18 18 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 19 19 C 1.50696 * 109.47351 * 293.95574 * 18 2 1 20 20 C 1.38238 * 120.00290 * 269.73171 * 19 18 2 21 21 C 1.38236 * 120.00520 * 179.76650 * 20 19 18 22 22 C 1.38238 * 119.99353 * 0.50323 * 21 20 19 23 23 C 1.38236 * 120.00267 * 359.74384 * 22 21 20 24 24 C 1.38231 * 119.99929 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 26 26 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 27 27 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 28 28 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 29 29 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 30 30 H 1.08994 * 109.47270 * 300.00135 * 4 3 2 31 31 H 1.08999 * 109.47017 * 60.00257 * 4 3 2 32 32 H 0.96990 * 120.00188 * 0.02562 * 5 4 3 33 33 H 0.96997 * 119.99884 * 359.97438 * 8 6 5 34 34 H 1.08997 * 109.47093 * 299.99905 * 9 8 6 35 35 H 1.09000 * 109.47109 * 59.99574 * 9 8 6 36 36 H 0.97001 * 119.99518 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.46995 * 53.95554 * 18 2 1 38 38 H 1.09001 * 109.46848 * 173.95560 * 18 2 1 39 39 H 1.08006 * 119.99743 * 359.97438 * 20 19 18 40 40 H 1.07995 * 120.00356 * 180.22999 * 21 20 19 41 41 H 1.07998 * 119.99864 * 179.72869 * 22 21 20 42 42 H 1.08000 * 119.99990 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.99738 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 7 2.1572 3.4248 1.3186 6 6 1.9559 4.2239 2.3852 7 8 1.3386 3.8097 3.3473 8 7 2.4390 5.4821 2.3852 9 6 2.2208 6.3505 3.5447 10 6 2.8568 7.6933 3.2934 11 1 3.3717 7.8813 2.3629 12 6 2.7804 8.6824 4.2511 13 7 2.1530 8.4536 5.3840 14 14 3.5682 10.3472 3.9392 15 1 2.5825 11.2469 3.2878 16 1 4.0014 10.9394 5.2303 17 1 4.7467 10.1787 3.0517 18 6 1.9954 -0.7660 -1.1377 19 6 1.6369 -2.2204 -0.9730 20 6 2.4964 -3.0730 -0.3056 21 6 2.1653 -4.4061 -0.1504 22 6 0.9794 -4.8889 -0.6716 23 6 0.1223 -4.0374 -1.3434 24 6 0.4512 -2.7034 -1.4945 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.4513 -0.9233 27 1 -0.3633 0.5740 0.8525 28 1 3.0798 1.3443 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 0.5473 2.0844 1.4266 31 1 2.0659 1.5013 2.1492 32 1 2.6494 3.7554 0.5510 33 1 2.9319 5.8123 1.6178 34 1 1.1505 6.4794 3.7058 35 1 2.6690 5.8962 4.4284 36 1 2.0996 9.1493 6.0579 37 1 1.5611 -0.3872 -2.0628 38 1 3.0797 -0.6611 -1.1757 39 1 3.4251 -2.6968 0.0974 40 1 2.8350 -5.0713 0.3742 41 1 0.7227 -5.9313 -0.5541 42 1 -0.8040 -4.4148 -1.7509 43 1 -0.2183 -2.0383 -2.0197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426452240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:59 Heat of formation + Delta-G solvation = -28.451258 kcal Electronic energy + Delta-G solvation = -21777.791049 eV Core-core repulsion = 18435.694101 eV Total energy + Delta-G solvation = -3342.096949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.91706 -40.34832 -38.43887 -36.25215 -35.61221 -34.32224 -32.70450 -31.75876 -30.19926 -28.69375 -28.19116 -25.47165 -24.34886 -23.38446 -22.40258 -21.96446 -21.59721 -19.77410 -18.04336 -17.67864 -17.46620 -17.00140 -16.71341 -16.37472 -16.21747 -16.07032 -15.61587 -15.23337 -14.84625 -14.78624 -14.62934 -14.21568 -14.01995 -13.90071 -13.63389 -13.37666 -12.94571 -12.86294 -12.73334 -12.69023 -12.58498 -12.21055 -12.15475 -11.80045 -11.77487 -11.46346 -11.27144 -10.79393 -10.26574 -9.76271 -9.69567 -9.57511 -9.29671 -8.27079 -6.43621 0.45104 0.55683 1.44422 1.47497 1.58411 1.82957 2.25109 2.40214 2.78828 3.07794 3.22149 3.64763 3.80626 3.89115 4.00241 4.08597 4.20813 4.30171 4.37628 4.41595 4.51634 4.58198 4.66894 4.74121 4.82850 4.87166 4.94906 5.06899 5.12252 5.16156 5.21106 5.28271 5.48949 5.51757 5.60434 5.67464 5.68874 5.73354 5.86320 6.00096 6.02827 6.17630 6.28398 6.68315 7.25631 7.33515 7.73523 8.85328 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.050783 B = 0.002003 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.235608 B =13974.081598 C =14045.598346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.546 5.546 3 C 0.059 3.941 4 C 0.146 3.854 5 N -0.730 5.730 6 C 0.691 3.309 7 O -0.651 6.651 8 N -0.722 5.722 9 C 0.285 3.715 10 C -0.555 4.555 11 H 0.085 0.915 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.988 3.012 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.255 1.255 18 C 0.097 3.903 19 C -0.089 4.089 20 C -0.113 4.113 21 C -0.132 4.132 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.122 4.122 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.412 0.588 33 H 0.406 0.594 34 H -0.015 1.015 35 H -0.015 1.015 36 H 0.269 0.731 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -23.532 -20.114 30.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.270 5.270 3 C -0.069 4.069 4 C 0.021 3.979 5 N -0.388 5.388 6 C 0.390 3.610 7 O -0.534 6.534 8 N -0.376 5.376 9 C 0.161 3.839 10 C -0.593 4.593 11 H 0.103 0.897 12 C -0.198 4.198 13 N -0.570 5.570 14 Si 0.811 3.189 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.179 1.179 18 C -0.030 4.030 19 C -0.090 4.090 20 C -0.132 4.132 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.141 4.141 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.249 0.751 33 H 0.241 0.759 34 H 0.003 0.997 35 H 0.003 0.997 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.144 0.856 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.065 -24.044 -18.651 30.430 hybrid contribution 0.111 1.390 -0.715 1.567 sum 0.176 -22.654 -19.366 29.804 Atomic orbital electron populations 1.22529 0.87019 1.02622 1.00870 1.61785 1.08609 1.12839 1.43780 1.22127 1.01802 0.88156 0.94822 1.21040 0.98105 0.80056 0.98688 1.44750 1.61521 1.13858 1.18706 1.16300 0.79863 0.81518 0.83286 1.90844 1.49102 1.76036 1.37372 1.45277 1.58893 1.11466 1.21986 1.18412 0.94311 0.88160 0.82996 1.21609 1.36596 0.96948 1.04108 0.89694 1.26097 0.95557 1.03836 0.94272 1.70152 1.43032 1.35774 1.07995 0.85113 0.78845 0.77224 0.77736 1.19614 1.21004 1.17872 1.21080 1.01140 0.89325 0.91412 1.19854 0.95233 0.95233 0.98664 1.21242 1.00061 0.93748 0.98124 1.21432 0.97677 0.95848 1.00074 1.21460 0.94562 1.00746 0.98043 1.21407 1.00347 0.93674 0.99459 1.21262 0.96405 0.96167 1.00216 0.90851 0.94331 0.92122 0.88351 0.92500 0.93228 0.93075 0.75137 0.75893 0.99717 0.99721 0.92258 0.92774 0.88822 0.85557 0.84749 0.84508 0.84513 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.94 127.69 1.14 1.45 16 2 N -0.55 -9.68 4.75 -927.04 -4.41 -14.09 16 3 C 0.06 1.01 5.07 86.30 0.44 1.45 16 4 C 0.15 3.84 5.61 86.38 0.48 4.33 16 5 N -0.73 -21.25 5.56 -478.52 -2.66 -23.91 16 6 C 0.69 29.58 8.57 179.05 1.53 31.12 16 7 O -0.65 -34.94 16.34 -3.99 -0.07 -35.01 16 8 N -0.72 -31.63 5.55 -482.31 -2.68 -34.31 16 9 C 0.28 16.07 5.43 85.63 0.46 16.53 16 10 C -0.55 -30.50 9.28 25.60 0.24 -30.26 16 11 H 0.09 4.18 7.60 -2.91 -0.02 4.16 16 12 C 0.00 0.11 5.46 84.66 0.46 0.57 16 13 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 14 Si 0.99 42.48 29.54 68.60 2.03 44.51 16 15 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 16 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 18 C 0.10 1.36 5.12 85.55 0.44 1.80 16 19 C -0.09 -1.41 4.88 -19.87 -0.10 -1.50 16 20 C -0.11 -1.81 9.70 22.27 0.22 -1.60 16 21 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 22 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 23 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 24 C -0.12 -1.76 7.97 22.27 0.18 -1.58 16 25 H 0.07 1.28 6.17 -2.39 -0.01 1.26 16 26 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 1.25 6.30 -2.38 -0.02 1.24 16 28 H 0.10 1.39 7.93 -2.39 -0.02 1.37 16 29 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 30 H 0.05 1.46 6.47 -2.39 -0.02 1.44 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.41 8.56 8.49 -92.72 -0.79 7.77 16 33 H 0.41 14.38 8.34 -92.71 -0.77 13.61 16 34 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H -0.02 -0.97 8.14 -2.39 -0.02 -0.98 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.05 0.65 8.06 -2.39 -0.02 0.63 16 38 H 0.09 1.13 7.87 -2.39 -0.02 1.11 16 39 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 43 H 0.13 1.50 8.03 -2.91 -0.02 1.48 16 Total: -1.00 -76.06 359.00 -1.88 -77.94 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.55 Total: 23.82 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.17 Total: 17.55 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -9.46 Total: -128.81 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.07 Total: -35.01 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -76.06 -1.88 -77.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426452240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.490 kcal (2) G-P(sol) polarization free energy of solvation -76.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds