Wall clock time and date at job start Tue Mar 31 2020 07:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99811 * 2 1 4 4 C 1.34772 * 120.00267 * 180.02562 * 2 1 3 5 5 O 1.21701 * 119.99964 * 1.28575 * 4 2 1 6 6 C 1.46682 * 120.00249 * 181.28744 * 4 2 1 7 7 C 1.37871 * 126.23395 * 183.70539 * 6 4 2 8 8 C 1.39836 * 107.08442 * 179.84577 * 7 6 4 9 9 C 1.35456 * 107.86232 * 0.42192 * 8 7 6 10 10 C 1.50708 * 125.56196 * 179.71522 * 9 8 7 11 11 N 1.46899 * 109.47103 * 265.02318 * 10 9 8 12 12 C 1.46900 * 110.99875 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47116 * 175.37126 * 12 11 10 14 14 C 1.50696 * 115.55109 * 53.58231 * 13 12 11 15 15 H 1.08009 * 120.00143 * 272.66722 * 14 13 12 16 16 C 1.37879 * 120.00286 * 92.66933 * 14 13 12 17 17 N 1.31519 * 119.99821 * 4.31603 * 16 14 13 18 18 Si 1.86792 * 120.00221 * 184.31187 * 16 14 13 19 19 H 1.48502 * 109.47450 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47181 * 119.99836 * 18 16 14 21 21 H 1.48500 * 109.47541 * 239.99859 * 18 16 14 22 22 C 1.53005 * 117.49829 * 267.91287 * 13 12 11 23 23 C 1.53003 * 117.50158 * 199.25554 * 13 12 11 24 24 N 1.35532 * 108.87474 * 359.74020 * 9 8 7 25 25 H 0.96994 * 125.67860 * 179.97438 * 24 9 8 26 26 H 1.08995 * 109.47057 * 89.99743 * 1 2 3 27 27 H 1.08996 * 109.46639 * 329.99383 * 1 2 3 28 28 H 1.08996 * 109.46508 * 209.99642 * 1 2 3 29 29 H 1.08996 * 109.47222 * 351.11818 * 3 2 1 30 30 H 1.09002 * 109.46902 * 111.11360 * 3 2 1 31 31 H 1.08997 * 109.47245 * 231.11359 * 3 2 1 32 32 H 1.07992 * 126.45615 * 0.02562 * 7 6 4 33 33 H 1.07999 * 126.06923 * 180.15879 * 8 7 6 34 34 H 1.09001 * 109.46695 * 25.02718 * 10 9 8 35 35 H 1.09000 * 109.46616 * 145.02641 * 10 9 8 36 36 H 1.00897 * 111.00361 * 303.95741 * 11 10 9 37 37 H 1.09002 * 109.47286 * 295.37154 * 12 11 10 38 38 H 1.09000 * 109.46735 * 55.37037 * 12 11 10 39 39 H 0.96990 * 119.99914 * 180.02562 * 17 16 14 40 40 H 1.08997 * 117.50134 * 0.02562 * 22 13 12 41 41 H 1.08999 * 117.49693 * 145.02045 * 22 13 12 42 42 H 1.08998 * 117.49934 * 214.98162 * 23 13 12 43 43 H 1.09004 * 117.49362 * 359.96967 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5307 -2.2210 -0.0246 6 6 3.6055 -1.1673 0.0280 7 6 4.4218 -2.2762 -0.0409 8 6 5.7420 -1.8187 0.0162 9 6 5.7096 -0.4690 0.1262 10 6 6.9140 0.4315 0.2240 11 7 7.2059 0.7072 1.6371 12 6 8.3770 1.5837 1.7715 13 6 8.5801 1.9411 3.2451 14 6 8.6640 0.7717 4.1919 15 1 7.7627 0.3561 4.6180 16 6 9.8912 0.2323 4.5144 17 7 10.9936 0.7903 4.0637 18 14 9.9882 -1.2908 5.5913 19 1 8.6168 -1.7216 5.9642 20 1 10.6636 -2.3827 4.8449 21 1 10.7612 -0.9797 6.8205 22 6 7.9173 3.2205 3.7597 23 6 9.4345 3.1700 3.5629 24 7 4.4172 -0.0607 0.1346 25 1 4.1148 0.8582 0.2045 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 0.8899 0.5139 28 1 -0.3632 -0.8900 0.5138 29 1 1.4999 2.0910 -0.1587 30 1 2.6997 1.3983 0.9587 31 1 2.9379 1.2609 -0.7999 32 1 4.1019 -3.3042 -0.1262 33 1 6.6297 -2.4329 -0.0169 34 1 7.7724 -0.0586 -0.2355 35 1 6.7101 1.3685 -0.2943 36 1 6.4024 1.1029 2.1018 37 1 9.2615 1.0682 1.3973 38 1 8.2167 2.4951 1.1953 39 1 11.8569 0.4106 4.2902 40 1 7.3362 3.8074 3.0484 41 1 7.5423 3.2165 4.7831 42 1 10.0570 3.1327 4.4569 43 1 9.8523 3.7235 2.7219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430063307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:25 Heat of formation + Delta-G solvation = 59.613038 kcal Electronic energy + Delta-G solvation = -23001.355885 eV Core-core repulsion = 19663.077691 eV Total energy + Delta-G solvation = -3338.278194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49911 -39.28342 -37.09106 -35.94607 -34.51990 -31.78561 -31.29320 -30.12883 -28.35404 -27.20113 -25.80550 -25.00918 -23.13513 -21.29567 -20.99536 -20.70048 -19.78458 -19.02220 -17.63784 -16.43427 -16.17910 -16.08480 -15.45942 -15.06316 -14.55042 -14.36888 -13.94364 -13.86882 -13.65110 -13.38288 -13.29440 -12.96637 -12.85990 -12.71365 -12.52002 -12.21118 -12.08284 -11.76035 -11.43372 -11.30745 -10.87682 -10.71627 -10.40167 -10.23506 -10.12908 -9.38729 -9.13959 -8.95421 -8.84194 -8.30705 -8.14058 -7.97531 -7.66068 -5.92998 -3.96405 1.44110 2.63813 2.78502 3.15931 3.36390 3.38194 3.44875 3.50708 4.35956 4.50040 4.50407 4.72352 4.78195 4.97997 5.04661 5.06828 5.21206 5.26497 5.30804 5.45633 5.48650 5.49284 5.67862 5.84980 6.01707 6.09416 6.15169 6.24502 6.35817 6.42439 6.51582 6.71350 6.84882 6.85836 7.00033 7.10851 7.15370 7.38138 7.44091 7.57065 7.86020 7.95094 7.97189 8.01300 8.53501 9.03139 9.67529 11.15035 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.003621 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.982460 B = 7729.852164 C = 8304.982386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.627 5.627 3 C 0.063 3.937 4 C 0.593 3.407 5 O -0.532 6.532 6 C -0.070 4.070 7 C -0.099 4.099 8 C -0.190 4.190 9 C 0.071 3.929 10 C 0.119 3.881 11 N -0.658 5.658 12 C 0.107 3.893 13 C 0.039 3.961 14 C -0.466 4.466 15 H 0.059 0.941 16 C 0.068 3.932 17 N -0.887 5.887 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.288 1.288 22 C -0.222 4.222 23 C -0.142 4.142 24 N -0.545 5.545 25 H 0.414 0.586 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.026 0.974 36 H 0.332 0.668 37 H 0.071 0.929 38 H -0.002 1.002 39 H 0.256 0.744 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.104 3.171 -10.653 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.361 5.361 3 C -0.080 4.080 4 C 0.384 3.616 5 O -0.409 6.409 6 C -0.182 4.182 7 C -0.126 4.126 8 C -0.214 4.214 9 C -0.048 4.048 10 C -0.011 4.011 11 N -0.288 5.288 12 C -0.022 4.022 13 C 0.038 3.962 14 C -0.504 4.504 15 H 0.077 0.923 16 C -0.134 4.134 17 N -0.525 5.525 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.215 1.215 22 C -0.259 4.259 23 C -0.180 4.180 24 N -0.150 5.150 25 H 0.259 0.741 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.114 0.886 35 H 0.044 0.956 36 H 0.150 0.850 37 H 0.090 0.910 38 H 0.016 0.984 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.985 2.181 -10.564 18.464 hybrid contribution -0.247 0.638 0.348 0.767 sum -15.232 2.819 -10.217 18.556 Atomic orbital electron populations 1.21672 0.78513 1.03372 1.01933 1.47608 1.07377 1.05871 1.75253 1.22100 0.98130 0.86396 1.01410 1.17163 0.85339 0.83241 0.75873 1.90818 1.68687 1.30630 1.50717 1.20085 0.89725 0.87704 1.20651 1.21295 0.91970 0.97318 1.02002 1.20722 0.97318 0.93015 1.10339 1.20677 0.84429 0.95478 1.04166 1.20569 0.93110 0.95207 0.92171 1.60334 1.07972 1.51517 1.09018 1.21601 0.92043 0.91351 0.97191 1.18899 0.98198 0.87908 0.91191 1.20278 0.92299 1.12898 1.24936 0.92303 1.24928 0.95823 0.96776 0.95874 1.70027 0.97242 1.39535 1.45693 0.86577 0.78046 0.83569 0.80005 1.19755 1.21071 1.21497 1.23102 0.96500 1.05791 1.00550 1.22438 0.90878 1.02749 1.01919 1.42986 1.05945 1.08857 1.57177 0.74118 0.92638 0.91116 0.90232 0.89247 0.91727 0.91380 0.83721 0.83756 0.88622 0.95645 0.85041 0.91014 0.98420 0.93397 0.92527 0.90575 0.89121 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.37 59.85 0.62 1.32 16 2 N -0.63 -6.40 3.27 -191.08 -0.63 -7.03 16 3 C 0.06 0.43 8.66 59.85 0.52 0.95 16 4 C 0.59 8.27 7.65 -12.85 -0.10 8.18 16 5 O -0.53 -9.01 16.48 5.19 0.09 -8.92 16 6 C -0.07 -0.97 6.75 -81.98 -0.55 -1.52 16 7 C -0.10 -1.44 10.66 -39.12 -0.42 -1.86 16 8 C -0.19 -2.77 10.71 -39.98 -0.43 -3.19 16 9 C 0.07 0.98 6.64 -81.95 -0.54 0.44 16 10 C 0.12 1.70 6.21 -4.97 -0.03 1.67 16 11 N -0.66 -11.87 6.18 -115.06 -0.71 -12.58 16 12 C 0.11 2.18 5.62 -3.83 -0.02 2.15 16 13 C 0.04 0.90 1.76 -155.66 -0.27 0.63 16 14 C -0.47 -12.39 8.54 -34.44 -0.29 -12.69 16 15 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 16 C 0.07 1.84 5.41 -17.82 -0.10 1.74 16 17 N -0.89 -24.79 12.00 55.43 0.67 -24.12 16 18 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.22 -4.64 9.92 -26.69 -0.26 -4.91 16 23 C -0.14 -3.26 8.90 -26.69 -0.24 -3.50 16 24 N -0.55 -6.60 5.22 -5.69 -0.03 -6.63 16 25 H 0.41 3.87 4.53 -40.82 -0.18 3.69 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.38 8.00 -51.93 -0.42 -0.04 16 28 H 0.08 0.75 7.44 -51.93 -0.39 0.36 16 29 H 0.09 0.37 7.88 -51.93 -0.41 -0.04 16 30 H 0.06 0.44 7.08 -51.93 -0.37 0.07 16 31 H 0.07 0.45 6.37 -51.93 -0.33 0.12 16 32 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.33 5.80 8.66 -39.29 -0.34 5.46 16 37 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.00 -0.04 8.07 -51.93 -0.42 -0.46 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 42 H 0.09 2.30 7.71 -51.93 -0.40 1.90 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -31.68 356.77 -8.99 -40.66 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.60 Total: 7.37 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -2.12 Total: -10.60 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.70 Total: -50.36 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.68 -8.99 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430063307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.276 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds