Wall clock time and date at job start Tue Mar 31 2020 07:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99811 * 2 1 4 4 C 1.34772 * 120.00267 * 180.02562 * 2 1 3 5 5 O 1.21701 * 119.99964 * 1.28575 * 4 2 1 6 6 C 1.46682 * 120.00249 * 181.28744 * 4 2 1 7 7 C 1.37871 * 126.23395 * 183.70539 * 6 4 2 8 8 C 1.39836 * 107.08442 * 179.84577 * 7 6 4 9 9 C 1.35456 * 107.86232 * 0.42192 * 8 7 6 10 10 C 1.50708 * 125.56196 * 179.71522 * 9 8 7 11 11 N 1.46899 * 109.47103 * 265.02318 * 10 9 8 12 12 C 1.46900 * 110.99875 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47116 * 175.37126 * 12 11 10 14 14 C 1.50696 * 115.55109 * 53.58231 * 13 12 11 15 15 H 1.08009 * 120.00143 * 272.66722 * 14 13 12 16 16 C 1.37879 * 120.00286 * 92.66933 * 14 13 12 17 17 N 1.31519 * 119.99821 * 4.31603 * 16 14 13 18 18 Si 1.86792 * 120.00221 * 184.31187 * 16 14 13 19 19 H 1.48502 * 109.47450 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47181 * 119.99836 * 18 16 14 21 21 H 1.48500 * 109.47541 * 239.99859 * 18 16 14 22 22 C 1.53005 * 117.49829 * 267.91287 * 13 12 11 23 23 C 1.53003 * 117.50158 * 199.25554 * 13 12 11 24 24 N 1.35532 * 108.87474 * 359.74020 * 9 8 7 25 25 H 0.96994 * 125.67860 * 179.97438 * 24 9 8 26 26 H 1.08995 * 109.47057 * 89.99743 * 1 2 3 27 27 H 1.08996 * 109.46639 * 329.99383 * 1 2 3 28 28 H 1.08996 * 109.46508 * 209.99642 * 1 2 3 29 29 H 1.08996 * 109.47222 * 351.11818 * 3 2 1 30 30 H 1.09002 * 109.46902 * 111.11360 * 3 2 1 31 31 H 1.08997 * 109.47245 * 231.11359 * 3 2 1 32 32 H 1.07992 * 126.45615 * 0.02562 * 7 6 4 33 33 H 1.07999 * 126.06923 * 180.15879 * 8 7 6 34 34 H 1.09001 * 109.46695 * 25.02718 * 10 9 8 35 35 H 1.09000 * 109.46616 * 145.02641 * 10 9 8 36 36 H 1.00897 * 111.00361 * 303.95741 * 11 10 9 37 37 H 1.09002 * 109.47286 * 295.37154 * 12 11 10 38 38 H 1.09000 * 109.46735 * 55.37037 * 12 11 10 39 39 H 0.96990 * 119.99914 * 180.02562 * 17 16 14 40 40 H 1.08997 * 117.50134 * 0.02562 * 22 13 12 41 41 H 1.08999 * 117.49693 * 145.02045 * 22 13 12 42 42 H 1.08998 * 117.49934 * 214.98162 * 23 13 12 43 43 H 1.09004 * 117.49362 * 359.96967 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5307 -2.2210 -0.0246 6 6 3.6055 -1.1673 0.0280 7 6 4.4218 -2.2762 -0.0409 8 6 5.7420 -1.8187 0.0162 9 6 5.7096 -0.4690 0.1262 10 6 6.9140 0.4315 0.2240 11 7 7.2059 0.7072 1.6371 12 6 8.3770 1.5837 1.7715 13 6 8.5801 1.9411 3.2451 14 6 8.6640 0.7717 4.1919 15 1 7.7627 0.3561 4.6180 16 6 9.8912 0.2323 4.5144 17 7 10.9936 0.7903 4.0637 18 14 9.9882 -1.2908 5.5913 19 1 8.6168 -1.7216 5.9642 20 1 10.6636 -2.3827 4.8449 21 1 10.7612 -0.9797 6.8205 22 6 7.9173 3.2205 3.7597 23 6 9.4345 3.1700 3.5629 24 7 4.4172 -0.0607 0.1346 25 1 4.1148 0.8582 0.2045 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 0.8899 0.5139 28 1 -0.3632 -0.8900 0.5138 29 1 1.4999 2.0910 -0.1587 30 1 2.6997 1.3983 0.9587 31 1 2.9379 1.2609 -0.7999 32 1 4.1019 -3.3042 -0.1262 33 1 6.6297 -2.4329 -0.0169 34 1 7.7724 -0.0586 -0.2355 35 1 6.7101 1.3685 -0.2943 36 1 6.4024 1.1029 2.1018 37 1 9.2615 1.0682 1.3973 38 1 8.2167 2.4951 1.1953 39 1 11.8569 0.4106 4.2902 40 1 7.3362 3.8074 3.0484 41 1 7.5423 3.2165 4.7831 42 1 10.0570 3.1327 4.4569 43 1 9.8523 3.7235 2.7219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430063307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:24 Heat of formation + Delta-G solvation = 39.055912 kcal Electronic energy + Delta-G solvation = -23002.247309 eV Core-core repulsion = 19663.077691 eV Total energy + Delta-G solvation = -3339.169618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.54022 -40.28810 -38.76847 -36.84605 -35.95491 -33.81227 -32.31288 -31.28790 -29.10968 -28.25358 -27.45508 -26.41341 -24.47295 -22.78189 -22.26086 -21.73739 -21.08800 -20.60611 -18.60305 -17.99921 -17.27605 -17.00892 -16.75617 -16.44985 -16.19575 -15.78921 -15.15574 -15.04387 -14.80583 -14.64168 -14.44716 -14.17449 -13.76018 -13.61166 -13.57247 -13.40198 -13.13902 -13.02551 -12.86939 -12.81969 -12.73284 -12.60282 -12.28792 -11.91632 -11.31255 -11.18227 -10.86866 -10.28082 -10.05081 -9.87517 -9.82754 -9.19461 -8.95230 -7.99173 -6.05748 0.36400 1.42266 1.47063 1.56366 1.66714 1.82130 2.18821 2.31083 2.50496 3.29292 3.42750 3.52102 3.71518 3.90479 3.98585 4.18169 4.20980 4.36839 4.37818 4.42972 4.56214 4.59468 4.63940 4.65801 4.71785 4.76988 4.84336 4.87851 5.03489 5.04408 5.13447 5.22355 5.36698 5.39163 5.73438 5.77930 5.79766 5.89975 5.93062 6.15335 6.31653 6.46985 6.55607 6.69411 6.95630 6.97924 7.59575 9.07827 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.003621 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.982460 B = 7729.852164 C = 8304.982386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.620 5.620 3 C 0.053 3.947 4 C 0.584 3.416 5 O -0.574 6.574 6 C -0.070 4.070 7 C -0.121 4.121 8 C -0.204 4.204 9 C 0.068 3.932 10 C 0.126 3.874 11 N -0.675 5.675 12 C 0.122 3.878 13 C 0.013 3.987 14 C -0.472 4.472 15 H 0.045 0.955 16 C 0.023 3.977 17 N -0.911 5.911 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.286 1.286 22 C -0.193 4.193 23 C -0.152 4.152 24 N -0.526 5.526 25 H 0.428 0.572 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.337 0.663 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.644 5.060 -11.413 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.353 5.353 3 C -0.089 4.089 4 C 0.375 3.625 5 O -0.454 6.454 6 C -0.183 4.183 7 C -0.148 4.148 8 C -0.228 4.228 9 C -0.051 4.051 10 C -0.003 4.003 11 N -0.306 5.306 12 C -0.007 4.007 13 C 0.013 3.987 14 C -0.510 4.510 15 H 0.063 0.937 16 C -0.175 4.175 17 N -0.551 5.551 18 Si 0.767 3.233 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.213 1.213 22 C -0.230 4.230 23 C -0.191 4.191 24 N -0.131 5.131 25 H 0.276 0.724 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.155 0.845 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.551 4.134 -11.322 20.474 hybrid contribution 0.147 0.102 0.584 0.611 sum -16.403 4.236 -10.738 20.058 Atomic orbital electron populations 1.21871 0.77135 1.04090 1.02866 1.47741 1.08452 1.05903 1.73173 1.22383 0.99085 0.85651 1.01815 1.17277 0.85329 0.83899 0.76009 1.90790 1.69286 1.32358 1.52955 1.20153 0.90062 0.88009 1.20049 1.21427 0.92393 0.97859 1.03153 1.20870 0.97393 0.93747 1.10838 1.20585 0.84966 0.95119 1.04421 1.20521 0.93083 0.96451 0.90271 1.60172 1.07544 1.51293 1.11623 1.21245 0.91990 0.92335 0.95127 1.19029 0.99715 0.87499 0.92492 1.20509 0.91563 1.13776 1.25157 0.93687 1.25494 0.95888 0.98917 0.97245 1.70115 0.97374 1.40568 1.47032 0.85798 0.77681 0.81044 0.78750 1.19882 1.21180 1.21263 1.23070 0.95078 1.03865 1.00959 1.22317 0.92031 1.03503 1.01204 1.42926 1.05022 1.09236 1.55961 0.72380 0.91597 0.87724 0.92188 0.85751 0.91295 0.90904 0.83908 0.83728 0.88912 0.92640 0.84511 0.93919 0.95829 0.93656 0.88900 0.91224 0.92366 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.37 127.77 1.33 2.45 16 2 N -0.62 -11.29 3.27 -876.68 -2.87 -14.16 16 3 C 0.05 0.53 8.66 127.77 1.11 1.63 16 4 C 0.58 15.88 7.65 86.45 0.66 16.55 16 5 O -0.57 -19.73 16.48 -4.35 -0.07 -19.80 16 6 C -0.07 -1.88 6.75 40.35 0.27 -1.61 16 7 C -0.12 -3.56 10.66 22.57 0.24 -3.32 16 8 C -0.20 -5.89 10.71 22.01 0.24 -5.65 16 9 C 0.07 1.78 6.64 41.35 0.27 2.05 16 10 C 0.13 3.29 6.21 85.56 0.53 3.82 16 11 N -0.68 -22.99 6.18 -517.93 -3.20 -26.20 16 12 C 0.12 4.75 5.62 86.30 0.48 5.23 16 13 C 0.01 0.60 1.76 -52.93 -0.09 0.51 16 14 C -0.47 -25.03 8.54 25.60 0.22 -24.81 16 15 H 0.04 2.46 7.82 -2.91 -0.02 2.43 16 16 C 0.02 1.27 5.41 84.65 0.46 1.73 16 17 N -0.91 -51.54 12.00 21.45 0.26 -51.28 16 18 Si 0.94 44.55 29.54 68.60 2.03 46.57 16 19 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 22 C -0.19 -7.55 9.92 30.62 0.30 -7.25 16 23 C -0.15 -6.86 8.90 30.62 0.27 -6.59 16 24 N -0.53 -11.57 5.22 -171.92 -0.90 -12.47 16 25 H 0.43 6.61 4.53 -92.71 -0.42 6.19 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.10 0.72 8.00 -2.39 -0.02 0.70 16 28 H 0.06 1.08 7.44 -2.39 -0.02 1.06 16 29 H 0.12 0.42 7.88 -2.39 -0.02 0.40 16 30 H 0.07 0.68 7.08 -2.39 -0.02 0.66 16 31 H 0.07 0.69 6.37 -2.39 -0.02 0.68 16 32 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 33 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.34 10.86 8.66 -89.70 -0.78 10.09 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.02 0.80 8.07 -2.39 -0.02 0.78 16 39 H 0.25 13.92 8.31 -92.72 -0.77 13.15 16 40 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.06 2.98 7.71 -2.39 -0.02 2.96 16 43 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -69.42 356.77 1.36 -68.07 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.18 Total: 24.52 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 6.29 Total: -15.26 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -6.71 Total: -104.11 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.07 Total: -19.80 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.42 1.36 -68.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430063307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.121 kcal (2) G-P(sol) polarization free energy of solvation -69.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds