Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47583 * 2 1 4 4 N 1.39933 * 125.75814 * 90.02363 * 3 2 1 5 5 C 1.30445 * 108.89901 * 179.97438 * 4 3 2 6 6 C 1.50700 * 125.98659 * 179.97438 * 5 4 3 7 7 C 1.41289 * 108.02403 * 359.97438 * 5 4 3 8 8 C 1.47428 * 126.41402 * 179.97438 * 7 5 4 9 9 O 1.21599 * 120.00001 * 90.02653 * 8 7 5 10 10 N 1.34782 * 120.00087 * 270.02956 * 8 7 5 11 11 C 1.46495 * 120.00258 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47269 * 184.79147 * 11 10 8 13 13 C 1.50694 * 115.55114 * 294.81128 * 12 11 10 14 14 H 1.08008 * 119.99906 * 95.20873 * 13 12 11 15 15 C 1.37875 * 120.00314 * 274.92789 * 13 12 11 16 16 N 1.31509 * 119.99913 * 355.42420 * 15 13 12 17 17 Si 1.86807 * 120.00040 * 175.41703 * 15 13 12 18 18 H 1.48494 * 109.47052 * 60.00642 * 17 15 13 19 19 H 1.48500 * 109.47055 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47106 * 300.00083 * 17 15 13 21 21 C 1.53003 * 117.49834 * 80.48431 * 12 11 10 22 22 C 1.53006 * 117.49908 * 149.14426 * 12 11 10 23 23 C 1.34264 * 125.75067 * 270.27123 * 3 2 1 24 24 C 1.50694 * 126.29712 * 0.03328 * 23 3 2 25 25 H 1.08997 * 109.47526 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47136 * 300.00701 * 1 2 3 27 27 H 1.09003 * 109.46592 * 60.00065 * 1 2 3 28 28 H 1.09004 * 109.47490 * 239.99709 * 2 1 3 29 29 H 1.08998 * 109.47265 * 120.00132 * 2 1 3 30 30 H 1.08998 * 109.47247 * 269.99953 * 6 5 4 31 31 H 1.09005 * 109.47211 * 30.00320 * 6 5 4 32 32 H 1.09000 * 109.47295 * 149.99880 * 6 5 4 33 33 H 0.96999 * 119.99637 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.47395 * 64.78624 * 11 10 8 35 35 H 1.09007 * 109.47080 * 304.78945 * 11 10 8 36 36 H 0.97001 * 119.99960 * 184.99387 * 16 15 13 37 37 H 1.09003 * 117.50034 * 214.99852 * 21 12 11 38 38 H 1.09002 * 117.49971 * 0.02686 * 21 12 11 39 39 H 1.08996 * 117.49810 * 359.97342 * 22 12 11 40 40 H 1.08995 * 117.50078 * 144.97442 * 22 12 11 41 41 H 1.08999 * 109.47387 * 270.17983 * 24 23 3 42 42 H 1.09004 * 109.47148 * 30.17580 * 24 23 3 43 43 H 1.08998 * 109.47500 * 150.17662 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2915 2.1519 1.1355 5 6 2.7081 3.3287 0.7572 6 6 3.1085 4.4611 1.6674 7 6 2.7180 3.3557 -0.6554 8 6 3.1194 4.4908 -1.5062 9 8 4.2777 4.6077 -1.8572 10 7 2.2025 5.3989 -1.8950 11 6 2.6012 6.5265 -2.7409 12 6 1.4082 7.4642 -2.9366 13 6 0.2450 6.8854 -3.7001 14 1 -0.5852 6.4453 -3.1675 15 6 0.2378 6.9228 -5.0783 16 7 1.2011 7.5427 -5.7243 17 14 -1.1403 6.0930 -6.0280 18 1 -2.4403 6.7003 -5.6459 19 1 -0.9172 6.2755 -7.4848 20 1 -1.1583 4.6429 -5.7084 21 6 1.0934 8.4512 -1.8107 22 6 1.7035 8.9540 -3.1216 23 6 2.2751 2.1224 -1.0896 24 6 2.1131 1.6870 -2.5232 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.2363 5.0770 1.8866 31 1 3.5100 4.0560 2.5963 32 1 3.8690 5.0693 1.1777 33 1 1.2784 5.3054 -1.6153 34 1 2.9335 6.1541 -3.7100 35 1 3.4157 7.0700 -2.2619 36 1 1.1587 7.6318 -6.6892 37 1 0.0449 8.6820 -1.6223 38 1 1.7365 8.4329 -0.9308 39 1 2.7476 9.2661 -3.1034 40 1 1.0567 9.5154 -3.7957 41 1 3.0417 1.2361 -2.8731 42 1 1.3063 0.9574 -2.5924 43 1 1.8742 2.5526 -3.1411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431142951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = 46.403284 kcal Electronic energy + Delta-G solvation = -23626.308440 eV Core-core repulsion = 20287.457428 eV Total energy + Delta-G solvation = -3338.851012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34537 -38.59316 -36.58390 -34.99772 -33.15666 -32.35827 -31.95084 -30.81943 -28.04329 -27.25296 -26.12429 -25.12815 -23.44313 -21.49708 -21.03598 -19.51700 -19.33999 -19.03077 -17.15110 -16.25510 -16.00508 -15.35343 -14.84610 -14.72557 -14.49527 -14.29018 -13.88739 -13.57905 -13.35936 -13.17355 -13.06327 -12.87936 -12.58562 -12.47692 -12.27375 -11.92605 -11.85818 -11.67477 -11.56774 -11.53304 -10.98116 -10.96039 -10.61201 -10.54415 -10.21765 -9.62315 -9.29452 -9.07543 -9.02476 -8.48489 -8.33466 -8.22336 -8.04365 -6.07178 -4.16728 1.80414 2.37718 2.64200 3.21667 3.24897 3.31365 3.32210 4.06893 4.34056 4.39609 4.57705 4.72645 4.82025 4.95613 4.99568 5.20264 5.29977 5.35471 5.38263 5.45979 5.48766 5.65358 5.70591 5.77746 5.91344 5.92212 5.96961 6.06978 6.13539 6.36830 6.50519 6.59953 6.65872 6.73759 6.91512 6.98373 7.14264 7.33900 7.41854 7.55816 7.75305 7.81280 8.35102 8.39252 8.84220 8.97094 9.49956 10.99971 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014835 B = 0.005044 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.938183 B = 5549.313786 C = 6632.345065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.128 3.872 3 N -0.363 5.363 4 N -0.303 5.303 5 C 0.112 3.888 6 C -0.075 4.075 7 C -0.274 4.274 8 C 0.586 3.414 9 O -0.554 6.554 10 N -0.694 5.694 11 C 0.163 3.837 12 C 0.024 3.976 13 C -0.499 4.499 14 H 0.059 0.941 15 C 0.074 3.926 16 N -0.874 5.874 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.210 4.210 22 C -0.142 4.142 23 C 0.126 3.874 24 C -0.099 4.099 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.401 0.599 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 -12.326 9.939 15.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.007 3.993 3 N -0.144 5.144 4 N -0.125 5.125 5 C -0.055 4.055 6 C -0.134 4.134 7 C -0.289 4.289 8 C 0.370 3.630 9 O -0.433 6.433 10 N -0.342 5.342 11 C 0.040 3.960 12 C 0.023 3.977 13 C -0.536 4.536 14 H 0.077 0.923 15 C -0.130 4.130 16 N -0.510 5.510 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.248 4.248 22 C -0.180 4.180 23 C -0.004 4.004 24 C -0.157 4.157 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.235 0.765 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.115 -13.125 10.460 16.784 hybrid contribution -1.081 -0.002 -1.233 1.640 sum -1.196 -13.127 9.228 16.090 Atomic orbital electron populations 1.22204 0.94132 1.03031 1.03593 1.21678 0.95360 0.77890 1.04397 1.48259 1.51048 1.11897 1.03151 1.77015 1.24010 1.04120 1.07327 1.22264 0.96929 0.94024 0.92309 1.20235 1.02231 0.93499 0.97450 1.20027 1.18770 0.96321 0.93740 1.17290 0.85215 0.81231 0.79245 1.90731 1.19017 1.76301 1.57259 1.46021 1.11778 1.25700 1.50714 1.21012 0.95959 0.86001 0.93056 1.19035 0.94760 0.87879 0.96000 1.20305 1.03260 1.39636 0.90426 0.92330 1.24971 0.95455 0.94896 0.97673 1.69977 1.31769 1.40907 1.08389 0.86722 0.82435 0.80228 0.78965 1.20322 1.21273 1.20205 1.23013 0.99793 1.09871 0.92083 1.22462 0.98541 0.99608 0.97411 1.21327 0.97280 0.90906 0.90890 1.20576 1.02952 1.03542 0.88674 0.90512 0.91473 0.91724 0.88905 0.88648 0.90068 0.90731 0.90162 0.76465 0.91458 0.94118 0.92829 0.90467 0.91666 0.91822 0.89575 0.89704 0.90770 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.13 1.13 6.75 -4.05 -0.03 1.10 16 3 N -0.36 -4.88 3.58 -56.61 -0.20 -5.09 16 4 N -0.30 -4.67 12.50 33.89 0.42 -4.25 16 5 C 0.11 1.77 7.26 -82.02 -0.60 1.18 16 6 C -0.08 -0.98 10.28 36.01 0.37 -0.61 16 7 C -0.27 -4.72 5.88 -105.07 -0.62 -5.34 16 8 C 0.59 11.66 6.97 -12.52 -0.09 11.57 16 9 O -0.55 -12.93 17.10 5.28 0.09 -12.84 16 10 N -0.69 -13.82 5.48 -61.39 -0.34 -14.16 16 11 C 0.16 3.68 5.50 -4.05 -0.02 3.65 16 12 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 13 C -0.50 -12.66 8.59 -34.44 -0.30 -12.96 16 14 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 15 C 0.07 1.93 5.43 -17.82 -0.10 1.84 16 16 N -0.87 -23.91 12.65 55.43 0.70 -23.21 16 17 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 C -0.21 -4.37 9.96 -26.69 -0.27 -4.64 16 22 C -0.14 -3.24 9.14 -26.69 -0.24 -3.49 16 23 C 0.13 1.87 7.01 -81.60 -0.57 1.30 16 24 C -0.10 -1.22 9.70 36.00 0.35 -0.87 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.63 7.64 -51.93 -0.40 0.23 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.10 8.01 -51.93 -0.42 0.68 16 33 H 0.40 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 35 H 0.04 0.91 8.09 -51.92 -0.42 0.49 16 36 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.70 7.71 -51.93 -0.40 0.29 16 43 H 0.09 1.35 7.96 -51.93 -0.41 0.93 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -31.22 367.91 -7.76 -38.98 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.00 Total: 7.72 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -1.95 Total: -7.89 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.59 Total: -46.70 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.22 -7.76 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431142951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.386 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds