Wall clock time and date at job start Tue Mar 31 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47583 * 2 1 4 4 N 1.39933 * 125.75814 * 90.02363 * 3 2 1 5 5 C 1.30445 * 108.89901 * 179.97438 * 4 3 2 6 6 C 1.50700 * 125.98659 * 179.97438 * 5 4 3 7 7 C 1.41289 * 108.02403 * 359.97438 * 5 4 3 8 8 C 1.47428 * 126.41402 * 179.97438 * 7 5 4 9 9 O 1.21599 * 120.00001 * 90.02653 * 8 7 5 10 10 N 1.34782 * 120.00087 * 270.02956 * 8 7 5 11 11 C 1.46495 * 120.00258 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47269 * 184.79147 * 11 10 8 13 13 C 1.50694 * 115.55114 * 294.81128 * 12 11 10 14 14 H 1.08008 * 119.99906 * 95.20873 * 13 12 11 15 15 C 1.37875 * 120.00314 * 274.92789 * 13 12 11 16 16 N 1.31509 * 119.99913 * 355.42420 * 15 13 12 17 17 Si 1.86807 * 120.00040 * 175.41703 * 15 13 12 18 18 H 1.48494 * 109.47052 * 60.00642 * 17 15 13 19 19 H 1.48500 * 109.47055 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47106 * 300.00083 * 17 15 13 21 21 C 1.53003 * 117.49834 * 80.48431 * 12 11 10 22 22 C 1.53006 * 117.49908 * 149.14426 * 12 11 10 23 23 C 1.34264 * 125.75067 * 270.27123 * 3 2 1 24 24 C 1.50694 * 126.29712 * 0.03328 * 23 3 2 25 25 H 1.08997 * 109.47526 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47136 * 300.00701 * 1 2 3 27 27 H 1.09003 * 109.46592 * 60.00065 * 1 2 3 28 28 H 1.09004 * 109.47490 * 239.99709 * 2 1 3 29 29 H 1.08998 * 109.47265 * 120.00132 * 2 1 3 30 30 H 1.08998 * 109.47247 * 269.99953 * 6 5 4 31 31 H 1.09005 * 109.47211 * 30.00320 * 6 5 4 32 32 H 1.09000 * 109.47295 * 149.99880 * 6 5 4 33 33 H 0.96999 * 119.99637 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.47395 * 64.78624 * 11 10 8 35 35 H 1.09007 * 109.47080 * 304.78945 * 11 10 8 36 36 H 0.97001 * 119.99960 * 184.99387 * 16 15 13 37 37 H 1.09003 * 117.50034 * 214.99852 * 21 12 11 38 38 H 1.09002 * 117.49971 * 0.02686 * 21 12 11 39 39 H 1.08996 * 117.49810 * 359.97342 * 22 12 11 40 40 H 1.08995 * 117.50078 * 144.97442 * 22 12 11 41 41 H 1.08999 * 109.47387 * 270.17983 * 24 23 3 42 42 H 1.09004 * 109.47148 * 30.17580 * 24 23 3 43 43 H 1.08998 * 109.47500 * 150.17662 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2915 2.1519 1.1355 5 6 2.7081 3.3287 0.7572 6 6 3.1085 4.4611 1.6674 7 6 2.7180 3.3557 -0.6554 8 6 3.1194 4.4908 -1.5062 9 8 4.2777 4.6077 -1.8572 10 7 2.2025 5.3989 -1.8950 11 6 2.6012 6.5265 -2.7409 12 6 1.4082 7.4642 -2.9366 13 6 0.2450 6.8854 -3.7001 14 1 -0.5852 6.4453 -3.1675 15 6 0.2378 6.9228 -5.0783 16 7 1.2011 7.5427 -5.7243 17 14 -1.1403 6.0930 -6.0280 18 1 -2.4403 6.7003 -5.6459 19 1 -0.9172 6.2755 -7.4848 20 1 -1.1583 4.6429 -5.7084 21 6 1.0934 8.4512 -1.8107 22 6 1.7035 8.9540 -3.1216 23 6 2.2751 2.1224 -1.0896 24 6 2.1131 1.6870 -2.5232 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.2363 5.0770 1.8866 31 1 3.5100 4.0560 2.5963 32 1 3.8690 5.0693 1.1777 33 1 1.2784 5.3054 -1.6153 34 1 2.9335 6.1541 -3.7100 35 1 3.4157 7.0700 -2.2619 36 1 1.1587 7.6318 -6.6892 37 1 0.0449 8.6820 -1.6223 38 1 1.7365 8.4329 -0.9308 39 1 2.7476 9.2661 -3.1034 40 1 1.0567 9.5154 -3.7957 41 1 3.0417 1.2361 -2.8731 42 1 1.3063 0.9574 -2.5924 43 1 1.8742 2.5526 -3.1411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431142951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:34 Heat of formation + Delta-G solvation = 27.339878 kcal Electronic energy + Delta-G solvation = -23627.135091 eV Core-core repulsion = 20287.457428 eV Total energy + Delta-G solvation = -3339.677663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.49293 -40.22817 -38.37974 -35.93305 -34.87326 -33.93174 -33.37795 -31.81420 -29.28282 -28.29329 -27.83223 -26.91574 -24.38770 -22.98296 -22.58200 -21.29231 -20.58563 -20.35591 -18.59707 -17.88871 -17.31366 -16.74765 -16.51935 -16.23106 -15.92452 -15.56562 -15.29266 -14.72936 -14.69059 -14.33038 -14.24871 -14.11775 -13.92739 -13.58053 -13.45542 -13.39601 -13.08932 -12.91987 -12.89701 -12.78020 -12.69442 -12.37715 -12.26157 -12.00210 -11.76256 -11.41284 -10.98085 -10.91320 -10.41328 -10.14291 -10.03132 -9.82664 -9.53190 -8.06306 -6.20619 0.67605 1.38518 1.44521 1.44841 1.45739 1.52612 1.65471 2.43499 2.53691 3.21164 3.44333 3.53510 3.57420 3.88433 4.07369 4.08177 4.17027 4.31465 4.34132 4.35688 4.54122 4.57450 4.68102 4.70117 4.72643 4.74031 4.76158 4.84302 4.92114 4.96947 5.01799 5.04574 5.09783 5.22448 5.31279 5.52517 5.57619 5.61585 5.72963 5.80380 5.98162 6.39699 6.61059 6.77351 6.86983 7.37077 7.48911 9.00458 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014835 B = 0.005044 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.938183 B = 5549.313786 C = 6632.345065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.354 5.354 4 N -0.316 5.316 5 C 0.104 3.896 6 C -0.074 4.074 7 C -0.312 4.312 8 C 0.596 3.404 9 O -0.594 6.594 10 N -0.687 5.687 11 C 0.179 3.821 12 C 0.003 3.997 13 C -0.504 4.504 14 H 0.060 0.940 15 C 0.027 3.973 16 N -0.906 5.906 17 Si 0.947 3.053 18 H -0.272 1.272 19 H -0.291 1.291 20 H -0.268 1.268 21 C -0.179 4.179 22 C -0.151 4.151 23 C 0.132 3.868 24 C -0.098 4.098 25 H 0.106 0.894 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.121 0.879 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.407 0.593 34 H 0.030 0.970 35 H 0.040 0.960 36 H 0.259 0.741 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 -14.365 11.051 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.004 4.004 3 N -0.134 5.134 4 N -0.138 5.138 5 C -0.063 4.063 6 C -0.133 4.133 7 C -0.327 4.327 8 C 0.382 3.618 9 O -0.476 6.476 10 N -0.334 5.334 11 C 0.055 3.945 12 C 0.002 3.998 13 C -0.541 4.541 14 H 0.079 0.921 15 C -0.174 4.174 16 N -0.544 5.544 17 Si 0.773 3.227 18 H -0.197 1.197 19 H -0.217 1.217 20 H -0.193 1.193 21 C -0.216 4.216 22 C -0.189 4.189 23 C 0.000 4.000 24 C -0.156 4.156 25 H 0.125 0.875 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.243 0.757 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.508 -15.192 11.612 19.181 hybrid contribution -0.668 0.562 -1.548 1.778 sum -2.177 -14.630 10.063 17.890 Atomic orbital electron populations 1.22171 0.93155 1.04624 1.02378 1.22184 0.96129 0.75654 1.06431 1.48663 1.49637 1.12975 1.02139 1.76970 1.24397 1.04086 1.08345 1.22600 0.96831 0.94823 0.92014 1.20298 1.02476 0.92910 0.97602 1.19906 1.22028 0.96511 0.94223 1.17614 0.84334 0.81364 0.78520 1.90698 1.20715 1.77292 1.58863 1.45899 1.12159 1.25187 1.50196 1.20620 0.95690 0.86516 0.91669 1.19070 0.94669 0.88170 0.97902 1.20589 1.03682 1.39115 0.90764 0.92142 1.25667 0.97550 0.95472 0.98698 1.70104 1.33502 1.42469 1.08305 0.85791 0.79961 0.79610 0.77344 1.19746 1.21677 1.19340 1.22999 1.00411 1.06495 0.91683 1.22379 0.98709 0.99143 0.98718 1.21624 0.95812 0.90314 0.92236 1.20658 1.04879 1.03464 0.86629 0.87512 0.93152 0.92409 0.86148 0.87433 0.88765 0.88951 0.91351 0.75734 0.95183 0.94220 0.93193 0.89839 0.89376 0.91216 0.91685 0.88493 0.87308 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 71.98 0.74 -1.34 16 2 C 0.11 1.66 6.75 86.38 0.58 2.24 16 3 N -0.35 -8.77 3.58 -333.01 -1.19 -9.96 16 4 N -0.32 -9.27 12.50 -46.68 -0.58 -9.85 16 5 C 0.10 3.21 7.26 43.51 0.32 3.52 16 6 C -0.07 -1.87 10.28 71.24 0.73 -1.14 16 7 C -0.31 -10.65 5.88 -20.15 -0.12 -10.76 16 8 C 0.60 24.05 6.97 86.66 0.60 24.65 16 9 O -0.59 -28.48 17.10 -4.03 -0.07 -28.55 16 10 N -0.69 -27.61 5.48 -466.38 -2.55 -30.17 16 11 C 0.18 8.26 5.50 86.38 0.48 8.74 16 12 C 0.00 0.12 1.47 -52.93 -0.08 0.04 16 13 C -0.50 -25.55 8.59 25.60 0.22 -25.33 16 14 H 0.06 2.98 7.82 -2.91 -0.02 2.96 16 15 C 0.03 1.41 5.43 84.65 0.46 1.87 16 16 N -0.91 -50.58 12.65 21.45 0.27 -50.31 16 17 Si 0.95 41.40 29.54 68.60 2.03 43.42 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 C -0.18 -7.19 9.96 30.62 0.30 -6.89 16 22 C -0.15 -6.93 9.14 30.62 0.28 -6.65 16 23 C 0.13 3.75 7.01 42.14 0.30 4.04 16 24 C -0.10 -2.24 9.70 71.23 0.69 -1.55 16 25 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.12 1.11 7.64 -2.38 -0.02 1.09 16 29 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.07 1.86 8.01 -2.39 -0.02 1.84 16 33 H 0.41 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.81 8.09 -2.38 -0.02 1.79 16 36 H 0.26 13.98 8.32 -92.71 -0.77 13.21 16 37 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.06 3.23 8.14 -2.39 -0.02 3.22 16 41 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.11 1.68 7.71 -2.38 -0.02 1.66 16 43 H 0.07 2.00 7.96 -2.39 -0.02 1.98 16 Total: -1.00 -68.27 367.91 3.63 -64.64 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.23 Total: 29.34 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.50 Total: -8.56 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -4.06 Total: -100.29 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.07 Total: -28.55 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -68.27 3.63 -64.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431142951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.978 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds