Wall clock time and date at job start Tue Mar 31 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46981 * 2 1 4 4 C 1.34755 * 120.15946 * 270.02177 * 3 2 1 5 5 N 1.30428 * 121.48509 * 180.15243 * 4 3 2 6 6 C 1.34082 * 121.81967 * 359.97438 * 5 4 3 7 7 C 1.35611 * 119.46200 * 359.69095 * 6 5 4 8 8 C 1.34937 * 120.15657 * 89.99744 * 3 2 1 9 9 O 1.21976 * 120.63886 * 0.02562 * 8 3 2 10 10 C 1.50472 * 122.20657 * 180.70311 * 7 6 5 11 11 C 1.52951 * 109.95441 * 343.14018 * 10 7 6 12 12 N 1.47189 * 108.42837 * 49.84035 * 11 10 7 13 13 C 1.46906 * 110.99793 * 166.08396 * 12 11 10 14 14 C 1.52997 * 109.46848 * 189.05162 * 13 12 11 15 15 C 1.53006 * 109.46931 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47012 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99776 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99847 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00056 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99960 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.47095 * 89.99781 * 20 18 16 22 22 H 1.48504 * 109.47219 * 209.99324 * 20 18 16 23 23 H 1.48499 * 109.47248 * 329.99788 * 20 18 16 24 24 C 1.46642 * 110.26410 * 289.51346 * 12 11 10 25 25 H 1.09002 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47528 * 300.00495 * 1 2 3 27 27 H 1.09005 * 109.46912 * 60.00182 * 1 2 3 28 28 H 1.08999 * 109.47344 * 240.00223 * 2 1 3 29 29 H 1.08995 * 109.46838 * 119.99303 * 2 1 3 30 30 H 1.08006 * 119.25570 * 0.15081 * 4 3 2 31 31 H 1.08994 * 109.38897 * 103.28285 * 10 7 6 32 32 H 1.08998 * 109.39059 * 223.08893 * 10 7 6 33 33 H 1.09004 * 109.67264 * 290.11198 * 11 10 7 34 34 H 1.09003 * 109.67636 * 169.57554 * 11 10 7 35 35 H 1.08998 * 109.47121 * 309.04995 * 13 12 11 36 36 H 1.09000 * 109.47141 * 69.05193 * 13 12 11 37 37 H 1.08998 * 109.47584 * 300.00097 * 14 13 12 38 38 H 1.09005 * 109.46901 * 60.00396 * 14 13 12 39 39 H 1.08998 * 109.47207 * 299.99936 * 15 14 13 40 40 H 1.09000 * 109.46973 * 60.00084 * 15 14 13 41 41 H 0.96994 * 120.00110 * 180.02562 * 19 18 16 42 42 H 1.09007 * 109.26401 * 172.59704 * 24 12 11 43 43 H 1.08999 * 109.26864 * 292.05454 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2436 2.0197 -1.1651 5 7 2.6809 3.2481 -1.1953 6 6 2.9282 3.9382 -0.0727 7 6 2.7144 3.3521 1.1314 8 6 2.2442 2.0203 1.1667 9 8 2.0462 1.4591 2.2315 10 6 2.9563 4.0742 2.4291 11 6 3.8296 5.3061 2.1861 12 7 3.2527 6.0725 1.0697 13 6 3.8379 7.4181 0.9971 14 6 3.0626 8.2570 -0.0207 15 6 3.6717 9.6586 -0.0960 16 6 2.9076 10.4852 -1.0980 17 1 2.0715 10.0538 -1.6284 18 6 3.2759 11.7920 -1.3376 19 7 2.6088 12.5136 -2.2117 20 14 4.7224 12.5378 -0.4207 21 1 5.9701 12.3058 -1.1919 22 1 4.5056 13.9978 -0.2576 23 1 4.8416 11.9026 0.9163 24 6 3.4389 5.3496 -0.1924 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 2.0577 1.5025 -2.0949 31 1 2.0018 4.3854 2.8534 32 1 3.4616 3.4060 3.1264 33 1 4.8425 4.9935 1.9318 34 1 3.8503 5.9243 3.0836 35 1 3.7816 7.8922 1.9769 36 1 4.8807 7.3446 0.6883 37 1 3.1188 7.7829 -1.0006 38 1 2.0198 8.3305 0.2881 39 1 3.6150 10.1325 0.8840 40 1 4.7145 9.5855 -0.4045 41 1 2.8681 13.4328 -2.3805 42 1 2.8942 5.8632 -0.9848 43 1 4.4998 5.3283 -0.4417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439002360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:49 Heat of formation + Delta-G solvation = 1.239728 kcal Electronic energy + Delta-G solvation = -23029.221371 eV Core-core repulsion = 19688.411920 eV Total energy + Delta-G solvation = -3340.809451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.16834 -38.86599 -37.73082 -35.98449 -34.13604 -32.63559 -31.57911 -31.02026 -30.09789 -27.63447 -25.64522 -25.06095 -23.60828 -22.71865 -22.03845 -20.29326 -19.94375 -18.73178 -17.57932 -16.67744 -16.62009 -16.43020 -15.40451 -15.20594 -14.63686 -14.51424 -14.35037 -14.23553 -14.04609 -13.68737 -13.46670 -12.99904 -12.97137 -12.68663 -12.58001 -12.27340 -12.02523 -11.78515 -11.58226 -11.55032 -11.36122 -10.92569 -10.68664 -10.28463 -10.22584 -10.09875 -9.91360 -9.66549 -9.53953 -9.13988 -8.50566 -8.45717 -8.26183 -6.00805 -3.98448 0.45586 1.65970 2.16629 3.32609 3.35400 3.40100 3.43707 3.57796 4.05397 4.11798 4.31583 4.48033 4.48553 4.55544 4.72422 4.79495 4.95445 5.07205 5.23676 5.25988 5.32837 5.34804 5.38114 5.52013 5.62582 5.65279 5.71019 5.74402 5.83669 5.97664 6.06729 6.13692 6.17528 6.34053 6.53742 6.57671 6.90081 7.11921 7.19291 7.37445 7.48179 7.60262 7.62195 7.83519 8.58523 9.05105 9.61835 11.12841 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031038 B = 0.002951 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.890477 B = 9486.224220 C =10043.576169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 N -0.527 5.527 4 C 0.364 3.636 5 N -0.531 5.531 6 C 0.181 3.819 7 C -0.237 4.237 8 C 0.522 3.478 9 O -0.538 6.538 10 C -0.045 4.045 11 C 0.049 3.951 12 N -0.532 5.532 13 C 0.054 3.946 14 C -0.099 4.099 15 C -0.013 4.013 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.098 3.902 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.203 0.797 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.016 0.984 40 H 0.009 0.991 41 H 0.262 0.738 42 H 0.113 0.887 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.492 -26.766 4.288 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.035 4.035 3 N -0.246 5.246 4 C 0.079 3.921 5 N -0.251 5.251 6 C 0.063 3.937 7 C -0.244 4.244 8 C 0.322 3.678 9 O -0.417 6.417 10 C -0.084 4.084 11 C -0.079 4.079 12 N -0.257 5.257 13 C -0.073 4.073 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 C -0.030 4.030 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.220 0.780 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.130 0.870 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.034 -26.376 4.368 26.736 hybrid contribution 1.386 0.003 0.766 1.583 sum 1.420 -26.374 5.133 26.906 Atomic orbital electron populations 1.22131 0.93888 1.03407 1.03252 1.21982 0.96086 0.80256 1.05174 1.46840 1.53771 1.15723 1.08229 1.24844 0.88241 0.88990 0.90025 1.68171 1.20425 1.06031 1.30492 1.20816 0.90059 0.95526 0.87301 1.21097 1.10917 0.94412 0.97956 1.17213 0.79886 0.87503 0.83225 1.90910 1.54161 1.68519 1.28070 1.20072 1.01073 0.94714 0.92509 1.22237 0.95602 0.94770 0.95335 1.62364 1.58037 1.02963 1.02293 1.22393 0.96356 0.86981 1.01538 1.21502 0.99697 0.95879 0.96663 1.19554 0.95935 0.92413 0.97203 1.21148 1.15915 0.96387 1.22121 0.90998 1.25042 0.96535 0.97123 0.94902 1.69918 1.40780 1.09160 1.34565 0.86773 0.83164 0.78235 0.81060 1.20394 1.21455 1.19005 1.20861 0.99850 0.87951 0.94345 0.90363 0.91628 0.91848 0.88620 0.88160 0.78043 0.89871 0.90300 0.94495 0.89639 0.90581 0.94933 0.92764 0.91813 0.96603 0.97263 0.92798 0.86954 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.16 0.38 -0.53 16 2 C 0.09 0.50 6.10 -4.04 -0.02 0.47 16 3 N -0.53 -4.80 2.57 -121.11 -0.31 -5.11 16 4 C 0.36 2.93 11.48 -90.70 -1.04 1.89 16 5 N -0.53 -6.18 10.28 -10.80 -0.11 -6.29 16 6 C 0.18 2.41 6.66 -82.61 -0.55 1.86 16 7 C -0.24 -3.20 5.78 -104.52 -0.60 -3.81 16 8 C 0.52 6.83 7.43 -15.03 -0.11 6.72 16 9 O -0.54 -8.33 16.06 4.94 0.08 -8.25 16 10 C -0.05 -0.58 5.61 -28.02 -0.16 -0.73 16 11 C 0.05 0.60 5.59 -3.69 -0.02 0.58 16 12 N -0.53 -7.77 4.69 -236.15 -1.11 -8.88 16 13 C 0.05 0.86 4.95 -3.82 -0.02 0.84 16 14 C -0.10 -1.96 5.07 -26.73 -0.14 -2.09 16 15 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 16 C -0.52 -14.88 9.66 -34.44 -0.33 -15.22 16 17 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 20 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 C 0.10 1.38 5.15 -5.18 -0.03 1.35 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.10 0.20 8.02 -51.93 -0.42 -0.21 16 29 H 0.10 0.69 7.46 -51.93 -0.39 0.31 16 30 H 0.20 0.60 8.03 -52.48 -0.42 0.18 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 33 H 0.04 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 35 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 36 H 0.03 0.50 8.07 -51.93 -0.42 0.08 16 37 H 0.05 1.06 6.64 -51.93 -0.34 0.72 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 40 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.11 1.69 6.64 -51.93 -0.34 1.35 16 43 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -34.93 345.51 -9.86 -44.80 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.87 Total: -3.94 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.85 Total: -7.28 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.76 Total: -47.71 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.08 Total: -8.25 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.93 -9.86 -44.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439002360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.035 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds