Wall clock time and date at job start Tue Mar 31 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46981 * 2 1 4 4 C 1.34755 * 120.15946 * 270.02177 * 3 2 1 5 5 N 1.30428 * 121.48509 * 180.15243 * 4 3 2 6 6 C 1.34082 * 121.81967 * 359.97438 * 5 4 3 7 7 C 1.35611 * 119.46200 * 359.69095 * 6 5 4 8 8 C 1.34937 * 120.15657 * 89.99744 * 3 2 1 9 9 O 1.21976 * 120.63886 * 0.02562 * 8 3 2 10 10 C 1.50472 * 122.20657 * 180.70311 * 7 6 5 11 11 C 1.52951 * 109.95441 * 343.14018 * 10 7 6 12 12 N 1.47189 * 108.42837 * 49.84035 * 11 10 7 13 13 C 1.46906 * 110.99793 * 166.08396 * 12 11 10 14 14 C 1.52997 * 109.46848 * 189.05162 * 13 12 11 15 15 C 1.53006 * 109.46931 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47012 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99776 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99847 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00056 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99960 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.47095 * 89.99781 * 20 18 16 22 22 H 1.48504 * 109.47219 * 209.99324 * 20 18 16 23 23 H 1.48499 * 109.47248 * 329.99788 * 20 18 16 24 24 C 1.46642 * 110.26410 * 289.51346 * 12 11 10 25 25 H 1.09002 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47528 * 300.00495 * 1 2 3 27 27 H 1.09005 * 109.46912 * 60.00182 * 1 2 3 28 28 H 1.08999 * 109.47344 * 240.00223 * 2 1 3 29 29 H 1.08995 * 109.46838 * 119.99303 * 2 1 3 30 30 H 1.08006 * 119.25570 * 0.15081 * 4 3 2 31 31 H 1.08994 * 109.38897 * 103.28285 * 10 7 6 32 32 H 1.08998 * 109.39059 * 223.08893 * 10 7 6 33 33 H 1.09004 * 109.67264 * 290.11198 * 11 10 7 34 34 H 1.09003 * 109.67636 * 169.57554 * 11 10 7 35 35 H 1.08998 * 109.47121 * 309.04995 * 13 12 11 36 36 H 1.09000 * 109.47141 * 69.05193 * 13 12 11 37 37 H 1.08998 * 109.47584 * 300.00097 * 14 13 12 38 38 H 1.09005 * 109.46901 * 60.00396 * 14 13 12 39 39 H 1.08998 * 109.47207 * 299.99936 * 15 14 13 40 40 H 1.09000 * 109.46973 * 60.00084 * 15 14 13 41 41 H 0.96994 * 120.00110 * 180.02562 * 19 18 16 42 42 H 1.09007 * 109.26401 * 172.59704 * 24 12 11 43 43 H 1.08999 * 109.26864 * 292.05454 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2436 2.0197 -1.1651 5 7 2.6809 3.2481 -1.1953 6 6 2.9282 3.9382 -0.0727 7 6 2.7144 3.3521 1.1314 8 6 2.2442 2.0203 1.1667 9 8 2.0462 1.4591 2.2315 10 6 2.9563 4.0742 2.4291 11 6 3.8296 5.3061 2.1861 12 7 3.2527 6.0725 1.0697 13 6 3.8379 7.4181 0.9971 14 6 3.0626 8.2570 -0.0207 15 6 3.6717 9.6586 -0.0960 16 6 2.9076 10.4852 -1.0980 17 1 2.0715 10.0538 -1.6284 18 6 3.2759 11.7920 -1.3376 19 7 2.6088 12.5136 -2.2117 20 14 4.7224 12.5378 -0.4207 21 1 5.9701 12.3058 -1.1919 22 1 4.5056 13.9978 -0.2576 23 1 4.8416 11.9026 0.9163 24 6 3.4389 5.3496 -0.1924 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 2.0577 1.5025 -2.0949 31 1 2.0018 4.3854 2.8534 32 1 3.4616 3.4060 3.1264 33 1 4.8425 4.9935 1.9318 34 1 3.8503 5.9243 3.0836 35 1 3.7816 7.8922 1.9769 36 1 4.8807 7.3446 0.6883 37 1 3.1188 7.7829 -1.0006 38 1 2.0198 8.3305 0.2881 39 1 3.6150 10.1325 0.8840 40 1 4.7145 9.5855 -0.4045 41 1 2.8681 13.4328 -2.3805 42 1 2.8942 5.8632 -0.9848 43 1 4.4998 5.3283 -0.4417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439002360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:48 Heat of formation + Delta-G solvation = -21.814926 kcal Electronic energy + Delta-G solvation = -23030.221095 eV Core-core repulsion = 19688.411920 eV Total energy + Delta-G solvation = -3341.809176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.02188 -39.91103 -38.68818 -36.96284 -35.69656 -34.25755 -32.78773 -32.08821 -31.01298 -29.12719 -26.95756 -25.89114 -24.54444 -23.76024 -23.33242 -21.64983 -21.23967 -19.63961 -18.82489 -18.35214 -17.51835 -17.29148 -16.61476 -16.30556 -16.06753 -15.66942 -15.41724 -15.21472 -15.02240 -14.82277 -14.66244 -14.34877 -14.08832 -13.97264 -13.56220 -13.29536 -13.16691 -13.05428 -12.82714 -12.67470 -12.40804 -12.25857 -12.19182 -11.77569 -11.48318 -11.41240 -11.25503 -11.17198 -11.04998 -10.91439 -10.73133 -9.42283 -9.37628 -8.26508 -6.30659 -0.38694 0.75246 1.38283 1.40735 1.46104 1.52871 2.39186 2.46478 2.63381 3.08986 3.18570 3.31390 3.64087 3.78830 3.96239 4.02244 4.08593 4.10061 4.22847 4.31765 4.38780 4.43050 4.46462 4.53677 4.65321 4.69183 4.81622 4.83140 4.83955 4.92946 4.95410 5.02329 5.10700 5.18307 5.20182 5.33733 5.52713 5.56170 5.63199 5.69548 5.98997 6.05730 6.33329 6.69847 6.77981 6.78533 7.33806 8.90695 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031038 B = 0.002951 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.890477 B = 9486.224220 C =10043.576169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.083 3.917 3 N -0.522 5.522 4 C 0.384 3.616 5 N -0.560 5.560 6 C 0.185 3.815 7 C -0.267 4.267 8 C 0.515 3.485 9 O -0.573 6.573 10 C -0.040 4.040 11 C 0.054 3.946 12 N -0.544 5.544 13 C 0.066 3.934 14 C -0.090 4.090 15 C -0.010 4.010 16 C -0.532 4.532 17 H 0.028 0.972 18 C 0.000 4.000 19 N -0.955 5.955 20 Si 0.954 3.046 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.243 1.243 24 C 0.099 3.901 25 H 0.100 0.900 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.085 0.915 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.022 0.978 40 H 0.021 0.979 41 H 0.266 0.734 42 H 0.096 0.904 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -28.556 4.357 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.038 4.038 3 N -0.238 5.238 4 C 0.101 3.899 5 N -0.282 5.282 6 C 0.065 3.935 7 C -0.274 4.274 8 C 0.315 3.685 9 O -0.455 6.455 10 C -0.079 4.079 11 C -0.073 4.073 12 N -0.269 5.269 13 C -0.061 4.061 14 C -0.128 4.128 15 C -0.047 4.047 16 C -0.570 4.570 17 H 0.046 0.954 18 C -0.196 4.196 19 N -0.596 5.596 20 Si 0.777 3.223 21 H -0.191 1.191 22 H -0.212 1.212 23 H -0.166 1.166 24 C -0.029 4.029 25 H 0.119 0.881 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.163 0.837 29 H 0.104 0.896 30 H 0.276 0.724 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.646 -28.226 4.423 28.618 hybrid contribution 0.741 0.448 0.600 1.053 sum 2.387 -27.778 5.022 28.330 Atomic orbital electron populations 1.22122 0.93649 1.04526 1.02010 1.22328 0.96207 0.78318 1.06914 1.46951 1.52513 1.16929 1.07455 1.25940 0.84908 0.87898 0.91177 1.68189 1.22406 1.07803 1.29792 1.20756 0.89632 0.95221 0.87869 1.21184 1.12766 0.95227 0.98192 1.17263 0.79784 0.87560 0.83934 1.90879 1.55824 1.69261 1.29535 1.19989 1.00497 0.94867 0.92545 1.22254 0.95719 0.94457 0.94905 1.62259 1.58621 1.02788 1.03223 1.22156 0.96093 0.87229 1.00596 1.21306 0.99066 0.94631 0.97802 1.19493 0.95872 0.93681 0.95698 1.21527 1.15261 0.97336 1.22884 0.95385 1.26084 1.00000 0.97651 0.95888 1.70084 1.43108 1.09764 1.36634 0.85599 0.78950 0.77196 0.80528 1.19079 1.21203 1.16589 1.20798 1.00070 0.88427 0.93617 0.88115 0.95141 0.90717 0.83651 0.89642 0.72376 0.91215 0.90187 0.93560 0.88298 0.89530 0.93747 0.93405 0.93530 0.95931 0.96065 0.92565 0.88645 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.24 71.98 0.74 -0.70 16 2 C 0.08 0.71 6.10 86.38 0.53 1.24 16 3 N -0.52 -8.46 2.57 -655.08 -1.68 -10.14 16 4 C 0.38 4.98 11.48 180.37 2.07 7.05 16 5 N -0.56 -12.13 10.28 -188.07 -1.93 -14.06 16 6 C 0.18 4.82 6.66 41.57 0.28 5.09 16 7 C -0.27 -7.18 5.78 -19.80 -0.11 -7.29 16 8 C 0.51 13.34 7.43 84.96 0.63 13.97 16 9 O -0.57 -18.14 16.06 -5.24 -0.08 -18.22 16 10 C -0.04 -1.03 5.61 29.76 0.17 -0.87 16 11 C 0.05 1.28 5.59 86.23 0.48 1.76 16 12 N -0.54 -15.50 4.69 -901.04 -4.23 -19.73 16 13 C 0.07 2.01 4.95 86.30 0.43 2.44 16 14 C -0.09 -3.54 5.07 30.60 0.16 -3.39 16 15 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 16 C -0.53 -31.30 9.66 25.60 0.25 -31.05 16 17 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 18 C 0.00 -0.01 5.47 84.65 0.46 0.46 16 19 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 20 Si 0.95 44.45 27.47 68.60 1.88 46.33 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 24 C 0.10 2.74 5.15 85.57 0.44 3.18 16 25 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.15 -0.14 8.02 -2.39 -0.02 -0.16 16 29 H 0.09 1.06 7.46 -2.39 -0.02 1.05 16 30 H 0.26 0.11 8.03 -2.91 -0.02 0.09 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 1.98 7.94 -2.39 -0.02 1.96 16 33 H 0.05 1.02 8.06 -2.39 -0.02 1.00 16 34 H 0.10 2.06 7.89 -2.39 -0.02 2.04 16 35 H 0.09 2.46 7.92 -2.39 -0.02 2.44 16 36 H 0.04 1.26 8.07 -2.39 -0.02 1.24 16 37 H 0.05 1.91 6.64 -2.39 -0.02 1.90 16 38 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 40 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 41 H 0.27 15.78 8.31 -92.71 -0.77 15.00 16 42 H 0.10 2.93 6.64 -2.38 -0.02 2.92 16 43 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 Total: -1.00 -79.88 345.51 1.82 -78.06 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 0.93 Total: 6.90 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 6.63 Total: -8.42 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -7.54 Total: -104.65 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.08 Total: -18.22 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -79.88 1.82 -78.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439002360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.243 kcal (2) G-P(sol) polarization free energy of solvation -79.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds