Wall clock time and date at job start Tue Mar 31 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46894 * 109.47378 * 2 1 4 4 C 1.46904 * 111.00106 * 199.75401 * 3 2 1 5 5 C 1.50701 * 109.46929 * 66.05065 * 4 3 2 6 6 H 1.07999 * 120.00106 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99678 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00291 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99427 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47600 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46853 * 120.00155 * 9 7 5 12 12 H 1.48501 * 109.46921 * 239.99484 * 9 7 5 13 13 C 1.46906 * 111.00070 * 75.80355 * 3 2 1 14 14 C 1.52996 * 109.47061 * 190.48740 * 13 3 2 15 15 C 1.50706 * 109.47028 * 174.62379 * 14 13 3 16 16 O 1.21273 * 119.99707 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99787 * 180.02562 * 15 14 13 18 18 C 1.39407 * 119.99790 * 185.50647 * 17 15 14 19 19 C 1.39041 * 119.69635 * 185.48923 * 18 17 15 20 20 C 1.38360 * 119.10067 * 180.02562 * 19 18 17 21 21 C 1.38843 * 118.49378 * 0.02562 * 20 19 18 22 22 C 1.50704 * 120.34501 * 180.02562 * 21 20 19 23 23 C 1.38076 * 119.31312 * 359.97438 * 21 20 19 24 24 N 1.31940 * 120.84575 * 359.72885 * 23 21 20 25 25 H 1.09004 * 109.47600 * 64.84880 * 1 2 3 26 26 H 1.08997 * 109.47885 * 184.85386 * 1 2 3 27 27 H 1.09011 * 109.47164 * 304.85221 * 1 2 3 28 28 H 1.08998 * 109.46936 * 240.00124 * 2 1 3 29 29 H 1.09000 * 109.47032 * 120.00534 * 2 1 3 30 30 H 1.09004 * 109.47274 * 186.04534 * 4 3 2 31 31 H 1.09001 * 109.47151 * 306.04926 * 4 3 2 32 32 H 0.96997 * 120.00112 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.46911 * 70.48395 * 13 3 2 34 34 H 1.09001 * 109.46427 * 310.48406 * 13 3 2 35 35 H 1.09002 * 109.47610 * 54.61773 * 14 13 3 36 36 H 1.09001 * 109.46961 * 294.61340 * 14 13 3 37 37 H 0.96996 * 120.00249 * 5.50677 * 17 15 14 38 38 H 1.07994 * 120.45145 * 359.97438 * 19 18 17 39 39 H 1.07997 * 120.75528 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47482 * 89.99521 * 22 21 20 41 41 H 1.09001 * 109.46791 * 210.00304 * 22 21 20 42 42 H 1.08999 * 109.46590 * 329.99586 * 22 21 20 43 43 H 1.07991 * 119.57496 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4121 1.4510 -0.4635 5 6 3.4783 1.0474 -1.9140 6 1 2.5763 0.7692 -2.4388 7 6 4.6906 1.0323 -2.5706 8 7 5.7889 1.3705 -1.9314 9 14 4.7727 0.5313 -4.3683 10 1 3.4088 0.1989 -4.8525 11 1 5.3234 1.6534 -5.1702 12 1 5.6515 -0.6572 -4.5113 13 6 1.8780 1.9934 1.3296 14 6 2.1479 3.4963 1.2340 15 6 1.8745 4.1417 2.5681 16 8 1.5002 3.4661 3.5031 17 7 2.0449 5.4697 2.7218 18 6 1.9037 6.0493 3.9818 19 6 1.9674 7.4319 4.1151 20 6 1.8262 7.9940 5.3714 21 6 1.6259 7.1504 6.4558 22 6 1.4664 7.7181 7.8427 23 6 1.5734 5.7861 6.2503 24 7 1.7056 5.2788 5.0395 25 1 -0.3634 0.4368 -0.9302 26 1 -0.3635 -1.0239 0.0869 27 1 -0.3634 0.5873 0.8434 28 1 1.8932 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 3.7840 2.4695 -0.3525 31 1 4.0253 0.7734 0.1306 32 1 6.6418 1.3595 -2.3933 33 1 2.5930 1.5387 2.0152 34 1 0.8656 1.8288 1.6984 35 1 1.4968 3.9351 0.4778 36 1 3.1891 3.6616 0.9571 37 1 2.2658 6.0222 1.9558 38 1 2.1257 8.0584 3.2498 39 1 1.8707 9.0647 5.5055 40 1 0.4118 7.9146 8.0358 41 1 1.8425 7.0023 8.5737 42 1 2.0296 8.6479 7.9217 43 1 1.4174 5.1261 7.0907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447314722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:38 Heat of formation + Delta-G solvation = 5.725560 kcal Electronic energy + Delta-G solvation = -22498.994314 eV Core-core repulsion = 19158.379384 eV Total energy + Delta-G solvation = -3340.614931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.84440 -39.15971 -36.94825 -35.15547 -33.12444 -32.66935 -31.83492 -31.26189 -29.34947 -27.17162 -26.17190 -24.27459 -23.27041 -22.43037 -21.91284 -20.34766 -19.46113 -18.14738 -17.13313 -16.45336 -15.85657 -15.56197 -15.38812 -14.97043 -14.60620 -14.39520 -14.23928 -13.98047 -13.67318 -13.30336 -13.21780 -12.87094 -12.71764 -12.56810 -12.22333 -12.08846 -11.98696 -11.38071 -11.16325 -10.94794 -10.83919 -10.66081 -10.60455 -10.40749 -10.09321 -10.01369 -9.94484 -9.66602 -9.15470 -9.04607 -8.44224 -8.22987 -7.22709 -6.03775 -4.04574 0.94732 1.17613 2.79190 2.87920 3.29932 3.37704 3.42611 3.78676 4.27043 4.42314 4.58444 4.68374 4.81447 4.82180 4.98378 5.16220 5.24757 5.31966 5.32318 5.49532 5.58540 5.60374 5.65670 5.76666 5.81607 6.05216 6.06117 6.10041 6.16899 6.20601 6.34309 6.39356 6.57089 6.69582 6.76735 6.85930 7.15313 7.28720 7.39027 7.81442 7.97556 8.09261 8.22682 8.34820 8.56555 9.04069 9.59678 11.07060 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.002886 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.303988 B = 9701.216352 C =10480.749484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 N -0.539 5.539 4 C 0.188 3.812 5 C -0.505 4.505 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.073 3.927 14 C -0.134 4.134 15 C 0.508 3.492 16 O -0.476 6.476 17 N -0.666 5.666 18 C 0.362 3.638 19 C -0.208 4.208 20 C -0.049 4.049 21 C -0.181 4.181 22 C -0.102 4.102 23 C 0.134 3.866 24 N -0.475 5.475 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.019 0.981 30 H 0.032 0.968 31 H -0.010 1.010 32 H 0.260 0.740 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.419 0.581 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.396 13.756 14.139 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 N -0.264 5.264 4 C 0.063 3.937 5 C -0.544 4.544 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.057 4.057 14 C -0.174 4.174 15 C 0.295 3.705 16 O -0.345 6.345 17 N -0.313 5.313 18 C 0.131 3.869 19 C -0.232 4.232 20 C -0.075 4.075 21 C -0.185 4.185 22 C -0.160 4.160 23 C -0.025 4.025 24 N -0.189 5.189 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.008 0.992 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.255 0.745 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.790 12.512 14.235 20.891 hybrid contribution 0.980 0.617 -0.764 1.388 sum -7.810 13.129 13.470 20.367 Atomic orbital electron populations 1.21789 0.96639 1.00005 1.01684 1.21937 0.94222 0.90024 1.00919 1.62113 1.25267 1.17200 1.21814 1.19801 0.81710 0.96841 0.95362 1.21218 0.93296 1.44465 0.95421 0.91753 1.24992 0.95660 0.95647 0.98371 1.69963 0.98410 1.48933 1.36543 0.86469 0.78073 0.78091 0.84955 1.19653 1.21060 1.21160 1.21706 1.00902 0.91595 0.91450 1.21711 1.05013 0.97768 0.92880 1.21319 0.76708 0.80906 0.91612 1.90768 1.40425 1.61399 1.41864 1.43863 1.69786 1.09902 1.07787 1.18574 0.93551 0.88456 0.86321 1.21485 1.08819 0.93526 0.99320 1.21213 0.95041 0.99985 0.91289 1.20825 1.05641 0.95039 0.96954 1.20621 1.02106 1.00985 0.92281 1.22586 0.93737 0.92451 0.93731 1.67677 1.14376 1.38665 0.98154 0.92432 0.93535 0.93488 0.89590 0.96313 0.94999 0.99200 0.93013 0.95267 0.91180 0.87881 0.87936 0.74462 0.84622 0.84732 0.91334 0.91400 0.91661 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 10.08 37.15 0.37 -2.00 16 2 C 0.06 1.14 5.53 -3.83 -0.02 1.12 16 3 N -0.54 -11.59 4.42 -236.07 -1.04 -12.63 16 4 C 0.19 4.79 4.58 -4.97 -0.02 4.77 16 5 C -0.51 -13.91 8.23 -34.44 -0.28 -14.19 16 6 H 0.06 1.76 7.31 -52.49 -0.38 1.38 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.31 13.29 55.43 0.74 -25.58 16 9 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.07 1.38 4.14 -3.82 -0.02 1.37 16 14 C -0.13 -2.16 5.53 -27.88 -0.15 -2.32 16 15 C 0.51 8.17 7.78 -10.98 -0.09 8.09 16 16 O -0.48 -9.35 14.21 5.56 0.08 -9.27 16 17 N -0.67 -8.53 5.39 -11.42 -0.06 -8.59 16 18 C 0.36 4.86 7.41 -154.70 -1.15 3.71 16 19 C -0.21 -2.06 9.94 -39.24 -0.39 -2.45 16 20 C -0.05 -0.43 9.85 -39.31 -0.39 -0.82 16 21 C -0.18 -1.69 5.90 -104.46 -0.62 -2.30 16 22 C -0.10 -0.63 10.03 36.01 0.36 -0.26 16 23 C 0.13 1.59 10.85 -17.56 -0.19 1.40 16 24 N -0.47 -7.32 7.93 -12.37 -0.10 -7.42 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.75 6.66 -51.92 -0.35 0.41 16 28 H 0.09 1.86 6.58 -51.93 -0.34 1.52 16 29 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 30 H 0.03 0.84 6.21 -51.93 -0.32 0.51 16 31 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 34 H 0.07 1.30 6.36 -51.93 -0.33 0.97 16 35 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.10 1.72 6.62 -51.93 -0.34 1.38 16 37 H 0.42 3.78 8.70 -40.82 -0.36 3.43 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 42 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 43 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -34.03 355.34 -9.35 -43.37 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.62 Total: 0.89 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.67 Total: -2.46 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.47 Total: -54.22 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.03 -9.35 -43.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447314722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.098 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds