Wall clock time and date at job start Tue Mar 31 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46894 * 109.47378 * 2 1 4 4 C 1.46904 * 111.00106 * 199.75401 * 3 2 1 5 5 C 1.50701 * 109.46929 * 66.05065 * 4 3 2 6 6 H 1.07999 * 120.00106 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99678 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00291 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99427 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47600 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46853 * 120.00155 * 9 7 5 12 12 H 1.48501 * 109.46921 * 239.99484 * 9 7 5 13 13 C 1.46906 * 111.00070 * 75.80355 * 3 2 1 14 14 C 1.52996 * 109.47061 * 190.48740 * 13 3 2 15 15 C 1.50706 * 109.47028 * 174.62379 * 14 13 3 16 16 O 1.21273 * 119.99707 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99787 * 180.02562 * 15 14 13 18 18 C 1.39407 * 119.99790 * 185.50647 * 17 15 14 19 19 C 1.39041 * 119.69635 * 185.48923 * 18 17 15 20 20 C 1.38360 * 119.10067 * 180.02562 * 19 18 17 21 21 C 1.38843 * 118.49378 * 0.02562 * 20 19 18 22 22 C 1.50704 * 120.34501 * 180.02562 * 21 20 19 23 23 C 1.38076 * 119.31312 * 359.97438 * 21 20 19 24 24 N 1.31940 * 120.84575 * 359.72885 * 23 21 20 25 25 H 1.09004 * 109.47600 * 64.84880 * 1 2 3 26 26 H 1.08997 * 109.47885 * 184.85386 * 1 2 3 27 27 H 1.09011 * 109.47164 * 304.85221 * 1 2 3 28 28 H 1.08998 * 109.46936 * 240.00124 * 2 1 3 29 29 H 1.09000 * 109.47032 * 120.00534 * 2 1 3 30 30 H 1.09004 * 109.47274 * 186.04534 * 4 3 2 31 31 H 1.09001 * 109.47151 * 306.04926 * 4 3 2 32 32 H 0.96997 * 120.00112 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.46911 * 70.48395 * 13 3 2 34 34 H 1.09001 * 109.46427 * 310.48406 * 13 3 2 35 35 H 1.09002 * 109.47610 * 54.61773 * 14 13 3 36 36 H 1.09001 * 109.46961 * 294.61340 * 14 13 3 37 37 H 0.96996 * 120.00249 * 5.50677 * 17 15 14 38 38 H 1.07994 * 120.45145 * 359.97438 * 19 18 17 39 39 H 1.07997 * 120.75528 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47482 * 89.99521 * 22 21 20 41 41 H 1.09001 * 109.46791 * 210.00304 * 22 21 20 42 42 H 1.08999 * 109.46590 * 329.99586 * 22 21 20 43 43 H 1.07991 * 119.57496 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4121 1.4510 -0.4635 5 6 3.4783 1.0474 -1.9140 6 1 2.5763 0.7692 -2.4388 7 6 4.6906 1.0323 -2.5706 8 7 5.7889 1.3705 -1.9314 9 14 4.7727 0.5313 -4.3683 10 1 3.4088 0.1989 -4.8525 11 1 5.3234 1.6534 -5.1702 12 1 5.6515 -0.6572 -4.5113 13 6 1.8780 1.9934 1.3296 14 6 2.1479 3.4963 1.2340 15 6 1.8745 4.1417 2.5681 16 8 1.5002 3.4661 3.5031 17 7 2.0449 5.4697 2.7218 18 6 1.9037 6.0493 3.9818 19 6 1.9674 7.4319 4.1151 20 6 1.8262 7.9940 5.3714 21 6 1.6259 7.1504 6.4558 22 6 1.4664 7.7181 7.8427 23 6 1.5734 5.7861 6.2503 24 7 1.7056 5.2788 5.0395 25 1 -0.3634 0.4368 -0.9302 26 1 -0.3635 -1.0239 0.0869 27 1 -0.3634 0.5873 0.8434 28 1 1.8932 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 3.7840 2.4695 -0.3525 31 1 4.0253 0.7734 0.1306 32 1 6.6418 1.3595 -2.3933 33 1 2.5930 1.5387 2.0152 34 1 0.8656 1.8288 1.6984 35 1 1.4968 3.9351 0.4778 36 1 3.1891 3.6616 0.9571 37 1 2.2658 6.0222 1.9558 38 1 2.1257 8.0584 3.2498 39 1 1.8707 9.0647 5.5055 40 1 0.4118 7.9146 8.0358 41 1 1.8425 7.0023 8.5737 42 1 2.0296 8.6479 7.9217 43 1 1.4174 5.1261 7.0907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447314722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:37 Heat of formation + Delta-G solvation = -16.795024 kcal Electronic energy + Delta-G solvation = -22499.970880 eV Core-core repulsion = 19158.379384 eV Total energy + Delta-G solvation = -3341.591496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82088 -40.29267 -38.62316 -36.21110 -34.78028 -33.99503 -33.05686 -32.25938 -31.04451 -28.57251 -27.41740 -25.36291 -24.64069 -24.12408 -22.86206 -21.61678 -21.04463 -19.12928 -18.65231 -18.16271 -17.03915 -16.85802 -16.60090 -16.08698 -15.95431 -15.74284 -15.58449 -15.27245 -15.01892 -14.53954 -14.25006 -14.13030 -13.93112 -13.84289 -13.59903 -13.22181 -13.00837 -12.80831 -12.63093 -12.61560 -12.52516 -12.36036 -12.23881 -11.80345 -11.61477 -11.44870 -11.22744 -11.17283 -10.74216 -10.58447 -10.04951 -9.11383 -9.06029 -8.18272 -6.27212 0.09440 0.39824 1.42604 1.43589 1.56927 1.61063 1.84841 2.42345 2.91997 3.13721 3.18908 3.51914 3.83203 3.92011 4.00028 4.07236 4.12051 4.17623 4.26502 4.29456 4.58710 4.60564 4.65357 4.74117 4.83721 4.87940 4.89418 4.91643 4.98726 5.09914 5.15959 5.17082 5.19441 5.34036 5.37237 5.40582 5.45778 5.68842 5.85723 6.07535 6.17434 6.34795 6.61268 6.89055 6.96096 7.33227 7.42057 8.93053 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.002886 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.303988 B = 9701.216352 C =10480.749484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.052 3.948 3 N -0.536 5.536 4 C 0.202 3.798 5 C -0.518 4.518 6 H 0.064 0.936 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.283 1.283 13 C 0.077 3.923 14 C -0.123 4.123 15 C 0.513 3.487 16 O -0.519 6.519 17 N -0.654 5.654 18 C 0.324 3.676 19 C -0.195 4.195 20 C -0.051 4.051 21 C -0.168 4.168 22 C -0.101 4.101 23 C 0.104 3.896 24 N -0.525 5.525 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.015 0.985 30 H 0.022 0.978 31 H -0.047 1.047 32 H 0.264 0.736 33 H 0.006 0.994 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.435 0.565 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.456 15.957 13.836 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.076 4.076 3 N -0.261 5.261 4 C 0.076 3.924 5 C -0.557 4.557 6 H 0.082 0.918 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.209 1.209 13 C -0.052 4.052 14 C -0.163 4.163 15 C 0.300 3.700 16 O -0.392 6.392 17 N -0.302 5.302 18 C 0.094 3.906 19 C -0.218 4.218 20 C -0.076 4.076 21 C -0.172 4.172 22 C -0.158 4.158 23 C -0.053 4.053 24 N -0.239 5.239 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.033 0.967 30 H 0.040 0.960 31 H -0.030 1.030 32 H 0.072 0.928 33 H 0.024 0.976 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.112 0.888 37 H 0.275 0.725 38 H 0.185 0.815 39 H 0.191 0.809 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.864 14.761 13.942 22.574 hybrid contribution 1.304 0.004 -0.530 1.407 sum -8.560 14.766 13.411 21.706 Atomic orbital electron populations 1.21684 0.93360 1.01835 1.01973 1.22025 0.96855 0.88964 0.99747 1.62141 1.22447 1.18316 1.23174 1.19502 0.83398 0.95096 0.94394 1.21479 0.93472 1.44491 0.96226 0.91789 1.25877 0.95196 0.95473 1.03039 1.70088 0.99039 1.49858 1.38506 0.85362 0.78372 0.77781 0.79264 1.18714 1.20255 1.20851 1.21687 1.00661 0.93248 0.89578 1.21557 1.04885 0.95983 0.93894 1.21136 0.76223 0.81944 0.90694 1.90747 1.42837 1.62701 1.42903 1.43581 1.69064 1.08829 1.08758 1.18890 0.96040 0.89877 0.85835 1.21842 1.06709 0.92100 1.01141 1.21728 0.93693 1.01808 0.90395 1.21209 1.02986 0.94026 0.98935 1.20704 1.03180 1.01729 0.90215 1.22850 0.95230 0.94172 0.93064 1.67506 1.15750 1.40935 0.99736 0.92294 0.91025 0.92895 0.91565 0.96719 0.96020 1.02981 0.92767 0.97613 0.90260 0.85914 0.88763 0.72518 0.81489 0.80894 0.90188 0.90930 0.89777 0.82146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 10.08 71.98 0.73 -3.44 16 2 C 0.05 2.12 5.53 86.30 0.48 2.60 16 3 N -0.54 -23.59 4.42 -900.80 -3.98 -27.57 16 4 C 0.20 10.72 4.58 85.56 0.39 11.11 16 5 C -0.52 -29.00 8.23 25.60 0.21 -28.79 16 6 H 0.06 3.52 7.31 -2.91 -0.02 3.50 16 7 C 0.00 0.11 5.46 84.66 0.46 0.58 16 8 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 9 Si 0.97 43.84 29.54 68.60 2.03 45.86 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 13 C 0.08 3.03 4.14 86.30 0.36 3.39 16 14 C -0.12 -4.07 5.53 29.85 0.16 -3.91 16 15 C 0.51 16.97 7.78 87.66 0.68 17.66 16 16 O -0.52 -21.34 14.21 -3.01 -0.04 -21.39 16 17 N -0.65 -16.69 5.39 -308.45 -1.66 -18.35 16 18 C 0.32 8.60 7.41 132.92 0.98 9.58 16 19 C -0.20 -3.42 9.94 22.49 0.22 -3.19 16 20 C -0.05 -0.72 9.85 22.44 0.22 -0.50 16 21 C -0.17 -2.81 5.90 -19.76 -0.12 -2.92 16 22 C -0.10 -0.95 10.03 71.24 0.71 -0.23 16 23 C 0.10 2.49 10.85 84.64 0.92 3.41 16 24 N -0.52 -16.64 7.93 -193.04 -1.53 -18.17 16 25 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.05 1.62 6.66 -2.38 -0.02 1.61 16 28 H 0.07 2.93 6.58 -2.39 -0.02 2.92 16 29 H 0.01 0.60 8.00 -2.39 -0.02 0.58 16 30 H 0.02 1.19 6.21 -2.38 -0.01 1.17 16 31 H -0.05 -2.83 8.12 -2.39 -0.02 -2.85 16 32 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.01 0.25 8.12 -2.39 -0.02 0.23 16 34 H 0.08 2.98 6.36 -2.39 -0.02 2.97 16 35 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 36 H 0.09 3.29 6.62 -2.39 -0.02 3.27 16 37 H 0.43 7.47 8.70 -92.71 -0.81 6.67 16 38 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 42 H 0.08 0.51 8.09 -2.39 -0.02 0.49 16 43 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -76.37 355.34 1.71 -74.66 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.20 Total: 15.01 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 6.42 Total: 5.34 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -6.89 Total: -119.49 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.04 Total: -21.39 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -76.37 1.71 -74.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447314722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.867 kcal (2) G-P(sol) polarization free energy of solvation -76.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds