Wall clock time and date at job start Tue Mar 31 2020 06:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.46981 * 2 1 4 4 C 1.46494 * 120.00130 * 85.02739 * 3 2 1 5 5 C 1.50700 * 109.47368 * 95.40827 * 4 3 2 6 6 H 1.07997 * 119.99852 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00072 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00182 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46830 * 60.00442 * 9 7 5 11 11 H 1.48494 * 109.47010 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47092 * 300.00508 * 9 7 5 13 13 C 1.34784 * 119.99869 * 265.02449 * 3 2 1 14 14 O 1.21565 * 119.99736 * 5.54106 * 13 3 2 15 15 C 1.47710 * 120.00109 * 185.54362 * 13 3 2 16 16 N 1.32215 * 126.67527 * 354.78984 * 15 13 3 17 17 N 1.28843 * 110.14755 * 179.86745 * 16 15 13 18 18 C 1.46503 * 124.97774 * 180.02562 * 17 16 15 19 19 C 1.34319 * 110.04274 * 0.33777 * 17 16 15 20 20 C 1.35587 * 107.21322 * 359.87642 * 19 17 16 21 21 C 1.50380 * 124.61595 * 179.78874 * 20 19 17 22 22 C 1.53474 * 108.28544 * 343.80314 * 21 20 19 23 23 C 1.53107 * 109.50987 * 49.47389 * 22 21 20 24 24 C 1.50704 * 128.90079 * 179.97438 * 19 17 16 25 25 H 1.09003 * 109.47474 * 59.99974 * 1 2 3 26 26 H 1.09006 * 109.47325 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47396 * 300.00358 * 1 2 3 28 28 H 1.08997 * 109.47396 * 239.99642 * 2 1 3 29 29 H 1.08998 * 109.47035 * 119.99855 * 2 1 3 30 30 H 1.09004 * 109.47042 * 215.41170 * 4 3 2 31 31 H 1.08999 * 109.47521 * 335.40594 * 4 3 2 32 32 H 0.97001 * 120.00667 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.46804 * 270.29842 * 18 17 16 34 34 H 1.08998 * 109.46691 * 30.29967 * 18 17 16 35 35 H 1.08994 * 109.47043 * 150.29954 * 18 17 16 36 36 H 1.09001 * 109.70241 * 103.50184 * 21 20 19 37 37 H 1.09000 * 109.69753 * 224.10385 * 21 20 19 38 38 H 1.09000 * 109.46654 * 289.46124 * 22 21 20 39 39 H 1.08999 * 109.45993 * 169.48021 * 22 21 20 40 40 H 1.09003 * 109.44334 * 169.88567 * 23 22 21 41 41 H 1.09004 * 109.41631 * 49.96932 * 23 22 21 42 42 H 1.08994 * 109.69502 * 282.97929 * 24 19 17 43 43 H 1.09003 * 109.69136 * 43.56451 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1587 2.1085 1.2639 5 6 3.5796 1.9956 1.7532 6 1 4.3053 1.4376 1.1803 7 6 3.9531 2.6048 2.9324 8 7 3.0692 3.2840 3.6304 9 14 5.7142 2.4643 3.5393 10 1 6.6339 3.0453 2.5285 11 1 5.8565 3.2016 4.8204 12 1 6.0519 1.0339 3.7518 13 6 2.3383 1.9828 -1.1629 14 8 2.1275 1.4171 -2.2180 15 6 2.9452 3.3295 -1.1552 16 7 3.1430 4.1005 -0.0995 17 7 3.6968 5.2078 -0.4562 18 6 4.0602 6.2966 0.4542 19 6 3.8860 5.2205 -1.7860 20 6 3.4190 4.0428 -2.2689 21 6 3.4351 3.6479 -3.7199 22 6 3.6687 4.9108 -4.5601 23 6 4.8664 5.6830 -4.0003 24 6 4.4953 6.2985 -2.6450 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.9102 3.1584 1.1085 31 1 1.4840 1.6815 2.0058 32 1 3.3318 3.7123 4.4602 33 1 3.2206 6.9849 0.5508 34 1 4.3069 5.8847 1.4328 35 1 4.9234 6.8300 0.0563 36 1 4.2397 2.9343 -3.8976 37 1 2.4790 3.1990 -3.9891 38 1 2.7804 5.5413 -4.5228 39 1 3.8699 4.6275 -5.5932 40 1 5.1437 6.4759 -4.6950 41 1 5.7082 5.0026 -3.8716 42 1 3.7742 7.1026 -2.7917 43 1 5.3904 6.6907 -2.1623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449797983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:38 Heat of formation + Delta-G solvation = 38.433002 kcal Electronic energy + Delta-G solvation = -24656.106199 eV Core-core repulsion = 21316.909569 eV Total energy + Delta-G solvation = -3339.196629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.15404 -38.61681 -36.67888 -35.01214 -33.26645 -32.54129 -30.43009 -29.99140 -29.24174 -26.97287 -26.57341 -23.59501 -23.09181 -22.84998 -21.63074 -20.82519 -18.69712 -18.08248 -16.55508 -16.21096 -15.95633 -15.55303 -15.17717 -14.45266 -14.33381 -14.00881 -13.61190 -13.49097 -13.37926 -13.10443 -12.70571 -12.66024 -12.45853 -12.17611 -12.11563 -11.82248 -11.62234 -11.46920 -11.35605 -10.87365 -10.81120 -10.71561 -10.61526 -10.42573 -10.34762 -10.03971 -9.63095 -9.38921 -9.06123 -8.44419 -8.28493 -7.97621 -7.51637 -5.98352 -3.98814 2.48168 2.67780 3.09281 3.28244 3.32421 3.37255 4.07677 4.34252 4.46522 4.74383 4.85359 4.98088 5.04648 5.35511 5.38659 5.43096 5.46023 5.56430 5.60455 5.67968 5.73845 5.81951 5.85813 5.89213 5.91555 5.98663 6.09346 6.15250 6.33856 6.35088 6.41003 6.50562 6.54403 6.73940 6.75692 6.97894 7.09047 7.37894 7.58463 7.87219 7.94424 8.31841 8.46785 8.71764 9.03655 9.20405 9.62465 11.09484 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012543 B = 0.007531 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.766327 B = 3716.905864 C = 5317.313535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.587 5.587 4 C 0.233 3.767 5 C -0.502 4.502 6 H 0.051 0.949 7 C 0.069 3.931 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.601 3.399 14 O -0.571 6.571 15 C -0.013 4.013 16 N -0.183 5.183 17 N -0.282 5.282 18 C 0.091 3.909 19 C -0.019 4.019 20 C -0.153 4.153 21 C -0.036 4.036 22 C -0.118 4.118 23 C -0.112 4.112 24 C -0.040 4.040 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.259 0.741 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 6.766 -10.255 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.317 5.317 4 C 0.113 3.887 5 C -0.541 4.541 6 H 0.069 0.931 7 C -0.132 4.132 8 N -0.533 5.533 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.204 1.204 13 C 0.388 3.612 14 O -0.451 6.451 15 C -0.172 4.172 16 N -0.018 5.018 17 N -0.070 5.070 18 C -0.050 4.050 19 C -0.143 4.143 20 C -0.164 4.164 21 C -0.074 4.074 22 C -0.156 4.156 23 C -0.150 4.150 24 C -0.079 4.079 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.918 6.714 -9.323 11.525 hybrid contribution 1.282 0.026 0.059 1.284 sum 2.201 6.740 -9.264 11.666 Atomic orbital electron populations 1.22106 0.96846 1.01094 1.02045 1.21257 0.93534 0.83666 1.02343 1.48178 1.61744 1.13308 1.08420 1.19720 0.96926 0.93427 0.78584 1.21270 0.95274 1.31654 1.05939 0.93114 1.24748 0.96588 0.95353 0.96548 1.69927 1.33495 1.34572 1.15320 0.86809 0.85900 0.78317 0.77820 1.20677 1.21322 1.20357 1.16945 0.77333 0.83287 0.83595 1.90639 1.57246 1.65861 1.31342 1.21476 1.08559 0.97165 0.89996 1.74872 1.10924 0.92432 1.23536 1.45361 1.42786 1.13708 1.05112 1.22005 1.01034 0.87071 0.94856 1.20937 1.08697 0.99538 0.85094 1.19735 1.06457 0.94044 0.96148 1.19875 1.02698 0.96231 0.88631 1.21644 0.98033 0.97127 0.98773 1.21538 0.98821 0.99593 0.95085 1.20081 0.99385 0.94464 0.93950 0.92795 0.92499 0.92538 0.90959 0.90709 0.91696 0.95277 0.93101 0.90398 0.88040 0.89846 0.91386 0.90167 0.91987 0.91778 0.91549 0.91543 0.90721 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 10.24 37.16 0.38 -2.38 16 2 C 0.12 2.28 6.12 -4.04 -0.02 2.25 16 3 N -0.59 -13.65 2.47 -176.23 -0.44 -14.08 16 4 C 0.23 5.97 4.78 -5.20 -0.02 5.95 16 5 C -0.50 -13.71 8.06 -34.44 -0.28 -13.99 16 6 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 7 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 8 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 9 Si 0.88 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.60 14.27 7.62 -12.39 -0.09 14.18 16 14 O -0.57 -13.72 15.32 5.31 0.08 -13.64 16 15 C -0.01 -0.30 6.73 -82.99 -0.56 -0.86 16 16 N -0.18 -4.19 7.71 33.28 0.26 -3.94 16 17 N -0.28 -5.31 3.69 -63.96 -0.24 -5.54 16 18 C 0.09 1.30 11.17 59.85 0.67 1.97 16 19 C -0.02 -0.32 6.71 -82.45 -0.55 -0.87 16 20 C -0.15 -2.96 5.99 -104.88 -0.63 -3.59 16 21 C -0.04 -0.59 5.58 -27.79 -0.16 -0.74 16 22 C -0.12 -1.43 5.91 -26.43 -0.16 -1.58 16 23 C -0.11 -1.23 5.89 -26.46 -0.16 -1.38 16 24 C -0.04 -0.48 5.90 -27.67 -0.16 -0.64 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.41 7.36 -51.93 -0.38 1.02 16 29 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 30 H 0.07 1.76 5.65 -51.93 -0.29 1.47 16 31 H 0.03 0.78 8.03 -51.93 -0.42 0.36 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.08 0.89 7.52 -51.93 -0.39 0.50 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.39 7.59 -51.93 -0.39 1.00 16 38 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.73 7.73 -51.93 -0.40 0.33 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -32.17 347.11 -8.12 -40.29 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.89 Total: -0.44 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.84 Total: 0.09 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.32 Total: -47.74 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.08 Total: -13.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.17 -8.12 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449797983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.726 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds