Wall clock time and date at job start Tue Mar 31 2020 06:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.46981 * 2 1 4 4 C 1.46494 * 120.00130 * 85.02739 * 3 2 1 5 5 C 1.50700 * 109.47368 * 95.40827 * 4 3 2 6 6 H 1.07997 * 119.99852 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00072 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00182 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46830 * 60.00442 * 9 7 5 11 11 H 1.48494 * 109.47010 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47092 * 300.00508 * 9 7 5 13 13 C 1.34784 * 119.99869 * 265.02449 * 3 2 1 14 14 O 1.21565 * 119.99736 * 5.54106 * 13 3 2 15 15 C 1.47710 * 120.00109 * 185.54362 * 13 3 2 16 16 N 1.32215 * 126.67527 * 354.78984 * 15 13 3 17 17 N 1.28843 * 110.14755 * 179.86745 * 16 15 13 18 18 C 1.46503 * 124.97774 * 180.02562 * 17 16 15 19 19 C 1.34319 * 110.04274 * 0.33777 * 17 16 15 20 20 C 1.35587 * 107.21322 * 359.87642 * 19 17 16 21 21 C 1.50380 * 124.61595 * 179.78874 * 20 19 17 22 22 C 1.53474 * 108.28544 * 343.80314 * 21 20 19 23 23 C 1.53107 * 109.50987 * 49.47389 * 22 21 20 24 24 C 1.50704 * 128.90079 * 179.97438 * 19 17 16 25 25 H 1.09003 * 109.47474 * 59.99974 * 1 2 3 26 26 H 1.09006 * 109.47325 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47396 * 300.00358 * 1 2 3 28 28 H 1.08997 * 109.47396 * 239.99642 * 2 1 3 29 29 H 1.08998 * 109.47035 * 119.99855 * 2 1 3 30 30 H 1.09004 * 109.47042 * 215.41170 * 4 3 2 31 31 H 1.08999 * 109.47521 * 335.40594 * 4 3 2 32 32 H 0.97001 * 120.00667 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.46804 * 270.29842 * 18 17 16 34 34 H 1.08998 * 109.46691 * 30.29967 * 18 17 16 35 35 H 1.08994 * 109.47043 * 150.29954 * 18 17 16 36 36 H 1.09001 * 109.70241 * 103.50184 * 21 20 19 37 37 H 1.09000 * 109.69753 * 224.10385 * 21 20 19 38 38 H 1.09000 * 109.46654 * 289.46124 * 22 21 20 39 39 H 1.08999 * 109.45993 * 169.48021 * 22 21 20 40 40 H 1.09003 * 109.44334 * 169.88567 * 23 22 21 41 41 H 1.09004 * 109.41631 * 49.96932 * 23 22 21 42 42 H 1.08994 * 109.69502 * 282.97929 * 24 19 17 43 43 H 1.09003 * 109.69136 * 43.56451 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1587 2.1085 1.2639 5 6 3.5796 1.9956 1.7532 6 1 4.3053 1.4376 1.1803 7 6 3.9531 2.6048 2.9324 8 7 3.0692 3.2840 3.6304 9 14 5.7142 2.4643 3.5393 10 1 6.6339 3.0453 2.5285 11 1 5.8565 3.2016 4.8204 12 1 6.0519 1.0339 3.7518 13 6 2.3383 1.9828 -1.1629 14 8 2.1275 1.4171 -2.2180 15 6 2.9452 3.3295 -1.1552 16 7 3.1430 4.1005 -0.0995 17 7 3.6968 5.2078 -0.4562 18 6 4.0602 6.2966 0.4542 19 6 3.8860 5.2205 -1.7860 20 6 3.4190 4.0428 -2.2689 21 6 3.4351 3.6479 -3.7199 22 6 3.6687 4.9108 -4.5601 23 6 4.8664 5.6830 -4.0003 24 6 4.4953 6.2985 -2.6450 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.9102 3.1584 1.1085 31 1 1.4840 1.6815 2.0058 32 1 3.3318 3.7123 4.4602 33 1 3.2206 6.9849 0.5508 34 1 4.3069 5.8847 1.4328 35 1 4.9234 6.8300 0.0563 36 1 4.2397 2.9343 -3.8976 37 1 2.4790 3.1990 -3.9891 38 1 2.7804 5.5413 -4.5228 39 1 3.8699 4.6275 -5.5932 40 1 5.1437 6.4759 -4.6950 41 1 5.7082 5.0026 -3.8716 42 1 3.7742 7.1026 -2.7917 43 1 5.3904 6.6907 -2.1623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449797983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:38 Heat of formation + Delta-G solvation = 19.683994 kcal Electronic energy + Delta-G solvation = -24656.919217 eV Core-core repulsion = 21316.909569 eV Total energy + Delta-G solvation = -3340.009647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.60137 -40.41694 -37.79848 -36.83298 -34.76304 -34.47399 -32.03528 -31.12465 -30.54354 -28.93477 -28.01113 -25.07171 -24.83877 -24.33332 -22.78427 -22.35659 -20.08572 -19.63301 -18.53434 -17.80892 -17.44410 -17.13035 -16.85730 -16.29259 -15.74326 -15.52480 -14.98033 -14.65034 -14.52031 -14.42406 -14.25755 -14.22486 -13.91342 -13.62934 -13.44981 -13.32678 -13.19790 -13.09517 -12.78172 -12.69133 -12.63621 -12.16521 -11.83722 -11.69241 -11.65214 -11.63731 -11.48369 -11.06961 -10.81848 -10.44496 -9.89369 -9.46849 -9.29522 -8.08596 -6.16303 0.83372 1.27587 1.34989 1.36929 1.44287 1.78574 2.32172 2.49332 2.60390 3.21877 3.54373 3.69832 3.90718 4.07694 4.09054 4.24160 4.33718 4.37431 4.38317 4.42499 4.53251 4.54339 4.70271 4.72336 4.74541 4.81417 4.82972 4.98707 5.06434 5.06909 5.10196 5.23839 5.25329 5.30211 5.39615 5.46802 5.52146 5.62412 5.82237 5.93690 6.18102 6.23166 6.55972 6.86650 7.16586 7.41538 7.50117 8.98465 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012543 B = 0.007531 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.766327 B = 3716.905864 C = 5317.313535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.108 3.892 3 N -0.594 5.594 4 C 0.253 3.747 5 C -0.509 4.509 6 H 0.030 0.970 7 C 0.034 3.966 8 N -0.915 5.915 9 Si 0.940 3.060 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.278 1.278 13 C 0.592 3.408 14 O -0.584 6.584 15 C -0.052 4.052 16 N -0.229 5.229 17 N -0.285 5.285 18 C 0.083 3.917 19 C 0.001 3.999 20 C -0.180 4.180 21 C -0.035 4.035 22 C -0.111 4.111 23 C -0.109 4.109 24 C -0.039 4.039 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.013 0.987 32 H 0.263 0.737 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.100 0.900 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.601 8.823 -11.271 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 N -0.323 5.323 4 C 0.132 3.868 5 C -0.548 4.548 6 H 0.048 0.952 7 C -0.165 4.165 8 N -0.555 5.555 9 Si 0.766 3.234 10 H -0.208 1.208 11 H -0.200 1.200 12 H -0.203 1.203 13 C 0.380 3.620 14 O -0.466 6.466 15 C -0.209 4.209 16 N -0.064 5.064 17 N -0.073 5.073 18 C -0.056 4.056 19 C -0.124 4.124 20 C -0.190 4.190 21 C -0.073 4.073 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.078 4.078 25 H 0.062 0.938 26 H 0.111 0.889 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.146 0.854 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.339 8.758 -10.329 13.743 hybrid contribution 0.831 -0.581 0.364 1.077 sum 3.170 8.176 -9.965 13.274 Atomic orbital electron populations 1.22000 0.94521 1.03166 1.01148 1.21479 0.95483 0.82096 1.02405 1.48238 1.62051 1.14409 1.07648 1.19307 0.95759 0.92743 0.78974 1.21235 0.95526 1.31888 1.06177 0.95152 1.25313 0.99943 0.94814 0.96443 1.70010 1.35045 1.34824 1.15590 0.85918 0.81613 0.78238 0.77594 1.20750 1.20008 1.20313 1.17288 0.77224 0.84068 0.83444 1.90596 1.57995 1.66514 1.31482 1.21628 1.10249 0.97240 0.91775 1.74727 1.12952 0.94249 1.24486 1.45788 1.41534 1.13324 1.06614 1.22356 1.03727 0.86190 0.93349 1.21742 1.06305 0.99830 0.84543 1.20190 1.07216 0.94803 0.96815 1.19897 1.01125 0.98325 0.87973 1.21624 0.99073 0.95074 0.99069 1.21575 0.97601 1.00318 0.95216 1.20390 1.00683 0.93279 0.93408 0.93783 0.88912 0.93198 0.90899 0.90515 0.93235 0.96934 0.92766 0.88245 0.90663 0.85417 0.92409 0.92407 0.91519 0.89590 0.87715 0.92433 0.88151 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 10.24 71.98 0.74 -4.41 16 2 C 0.11 4.39 6.12 86.38 0.53 4.92 16 3 N -0.59 -28.98 2.47 -829.74 -2.05 -31.03 16 4 C 0.25 13.56 4.78 85.63 0.41 13.97 16 5 C -0.51 -28.73 8.06 25.60 0.21 -28.52 16 6 H 0.03 1.80 7.81 -2.91 -0.02 1.78 16 7 C 0.03 1.89 5.46 84.65 0.46 2.35 16 8 N -0.91 -51.66 13.29 21.45 0.28 -51.38 16 9 Si 0.94 43.78 29.54 68.60 2.03 45.81 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 C 0.59 29.55 7.62 86.75 0.66 30.21 16 14 O -0.58 -29.46 15.32 -3.92 -0.06 -29.52 16 15 C -0.05 -2.45 6.73 42.14 0.28 -2.16 16 16 N -0.23 -10.77 7.71 -48.62 -0.37 -11.15 16 17 N -0.28 -10.54 3.69 -356.29 -1.31 -11.85 16 18 C 0.08 2.23 11.17 127.77 1.43 3.65 16 19 C 0.00 0.03 6.71 41.57 0.28 0.31 16 20 C -0.18 -7.00 5.99 -20.03 -0.12 -7.12 16 21 C -0.03 -1.14 5.58 29.91 0.17 -0.97 16 22 C -0.11 -2.39 5.91 30.79 0.18 -2.21 16 23 C -0.11 -1.93 5.89 30.77 0.18 -1.75 16 24 C -0.04 -0.76 5.90 29.99 0.18 -0.58 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 2.93 7.36 -2.39 -0.02 2.91 16 29 H 0.08 3.05 8.11 -2.39 -0.02 3.03 16 30 H 0.05 2.84 5.65 -2.39 -0.01 2.83 16 31 H 0.01 0.70 8.03 -2.39 -0.02 0.69 16 32 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.13 2.22 7.52 -2.39 -0.02 2.20 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 2.09 7.59 -2.39 -0.02 2.07 16 38 H 0.07 1.39 8.12 -2.39 -0.02 1.37 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.14 8.11 -2.39 -0.02 1.12 16 42 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.10 1.46 7.73 -2.39 -0.02 1.44 16 Total: -1.00 -73.38 347.11 5.08 -68.30 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.99 Total: 13.14 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 5.58 Total: 7.68 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -3.45 Total: -105.40 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.06 Total: -29.52 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -73.38 5.08 -68.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449797983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.986 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds