Wall clock time and date at job start Tue Mar 31 2020 06:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47247 * 2 1 4 4 C 1.46504 * 119.99791 * 269.99911 * 3 2 1 5 5 C 1.50704 * 109.46924 * 269.99757 * 4 3 2 6 6 H 1.08001 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99910 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99810 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99938 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46895 * 60.00841 * 9 7 5 11 11 H 1.48503 * 109.46987 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47308 * 300.00635 * 9 7 5 13 13 C 1.34778 * 120.00386 * 89.99881 * 3 2 1 14 14 O 1.21579 * 120.00015 * 179.97438 * 13 3 2 15 15 N 1.34771 * 119.99640 * 359.97438 * 13 3 2 16 16 C 1.39980 * 119.99978 * 173.75563 * 15 13 3 17 17 C 1.39270 * 120.48416 * 304.94200 * 16 15 13 18 18 C 1.50703 * 120.82207 * 359.97438 * 17 16 15 19 19 C 1.38511 * 118.35806 * 180.24799 * 17 16 15 20 20 C 1.38266 * 119.23407 * 359.46545 * 19 17 16 21 21 C 1.50707 * 119.53997 * 180.27408 * 20 19 17 22 22 N 1.31853 * 120.92046 * 0.54809 * 20 19 17 23 23 C 1.31828 * 121.79505 * 359.72521 * 22 20 19 24 24 C 1.50688 * 119.66997 * 180.02562 * 23 22 20 25 25 H 1.09006 * 109.47117 * 300.00537 * 1 2 3 26 26 H 1.09004 * 109.46747 * 60.00038 * 1 2 3 27 27 H 1.08994 * 109.47372 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47168 * 239.99724 * 2 1 3 29 29 H 1.09004 * 109.46747 * 119.99962 * 2 1 3 30 30 H 1.08997 * 109.47260 * 29.99858 * 4 3 2 31 31 H 1.09003 * 109.47254 * 150.00125 * 4 3 2 32 32 H 0.97002 * 119.99787 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00586 * 353.75712 * 15 13 3 34 34 H 1.08995 * 109.47364 * 96.05932 * 18 17 16 35 35 H 1.08997 * 109.46956 * 336.05092 * 18 17 16 36 36 H 1.08997 * 109.46822 * 216.05971 * 18 17 16 37 37 H 1.08001 * 120.38028 * 179.70490 * 19 17 16 38 38 H 1.09001 * 109.46420 * 270.27298 * 21 20 19 39 39 H 1.08999 * 109.46908 * 30.27297 * 21 20 19 40 40 H 1.08996 * 109.47124 * 150.27459 * 21 20 19 41 41 H 1.09000 * 109.47244 * 269.08041 * 24 23 22 42 42 H 1.09003 * 109.47477 * 29.08237 * 24 23 22 43 43 H 1.09003 * 109.47520 * 149.08120 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1493 2.3895 -2.8780 8 7 3.3492 3.1255 -3.6182 9 14 5.9133 2.0953 -3.4175 10 1 6.1402 0.6385 -3.5948 11 1 6.1608 2.7954 -4.7035 12 1 6.8412 2.6186 -2.3829 13 6 2.2430 2.0166 1.1672 14 8 2.6488 3.1627 1.1671 15 7 2.0179 1.3815 2.3343 16 6 2.3734 1.9915 3.5430 17 6 3.6772 2.4326 3.7551 18 6 4.7321 2.2636 2.6922 19 6 3.9819 3.0254 4.9693 20 6 2.9874 3.1689 5.9191 21 6 3.3098 3.8185 7.2402 22 7 1.7622 2.7404 5.6872 23 6 1.4312 2.1660 4.5478 24 6 0.0161 1.6946 4.3335 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5818 1.6876 -2.0284 31 1 2.0956 3.1410 -1.1385 32 1 3.6753 3.5159 -4.4441 33 1 1.6095 0.5016 2.3369 34 1 4.8139 3.1827 2.1120 35 1 4.4550 1.4410 2.0329 36 1 5.6905 2.0447 3.1630 37 1 4.9838 3.3750 5.1703 38 1 3.6345 3.0572 7.9496 39 1 4.1067 4.5490 7.1010 40 1 2.4214 4.3189 7.6254 41 1 -0.0746 0.6579 4.6578 42 1 -0.6660 2.3174 4.9123 43 1 -0.2348 1.7674 3.2752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455486539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:45 Heat of formation + Delta-G solvation = 1.098282 kcal Electronic energy + Delta-G solvation = -24015.371304 eV Core-core repulsion = 20674.555720 eV Total energy + Delta-G solvation = -3340.815584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83545 -39.19211 -35.71340 -34.88885 -33.84580 -32.86217 -31.84070 -30.15650 -28.94982 -27.56830 -27.20000 -25.84721 -23.09769 -22.91011 -21.52511 -20.86957 -19.36378 -17.94932 -16.84679 -16.73198 -16.33294 -15.10795 -14.79325 -14.72731 -14.45440 -14.19374 -13.66191 -13.54852 -13.32360 -13.17028 -12.97712 -12.83766 -12.67348 -12.27248 -12.09974 -12.08540 -12.01344 -11.77177 -11.63635 -11.37890 -11.21176 -10.97556 -10.81788 -10.54844 -10.14899 -9.98253 -9.65529 -9.50280 -9.17586 -9.01296 -8.44226 -8.11836 -7.64498 -6.05141 -4.09842 1.18243 1.43668 3.19621 3.30227 3.35167 3.38252 3.72878 3.94111 4.27355 4.37741 4.49898 4.75005 4.82037 5.16532 5.22610 5.28712 5.36255 5.50955 5.52013 5.54066 5.56323 5.57471 5.62929 5.66072 5.73797 5.87683 5.93075 6.02488 6.08082 6.16721 6.25138 6.38668 6.43233 6.55646 6.65200 6.78478 7.12374 7.34314 7.50714 7.65548 7.92993 8.12590 8.22416 8.59360 8.90872 9.27149 9.55742 11.02706 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.004775 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.328857 B = 5862.461909 C = 6936.083889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.608 5.608 4 C 0.262 3.738 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.700 3.300 14 O -0.568 6.568 15 N -0.697 5.697 16 C 0.117 3.883 17 C -0.025 4.025 18 C -0.109 4.109 19 C -0.168 4.168 20 C 0.114 3.886 21 C -0.097 4.097 22 N -0.480 5.480 23 C 0.117 3.883 24 C -0.100 4.100 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.400 0.600 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 -6.144 16.240 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.343 5.343 4 C 0.143 3.857 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.402 3.598 14 O -0.444 6.444 15 N -0.351 5.351 16 C 0.020 3.980 17 C -0.035 4.035 18 C -0.166 4.166 19 C -0.189 4.189 20 C -0.024 4.024 21 C -0.155 4.155 22 N -0.191 5.191 23 C -0.023 4.023 24 C -0.157 4.157 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.151 0.849 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.711 -5.092 16.563 17.721 hybrid contribution 1.453 -0.716 -1.151 1.987 sum -2.258 -5.809 15.412 16.625 Atomic orbital electron populations 1.22262 0.96729 1.01476 1.02532 1.21369 0.93539 0.84441 1.02471 1.47592 1.67389 1.13135 1.06189 1.19202 0.96143 0.93450 0.76926 1.21400 0.96977 1.31905 1.06189 0.92577 1.24913 0.97732 0.94951 0.96395 1.69919 1.35694 1.33377 1.14368 0.86587 0.84918 0.78212 0.77852 1.20298 1.21197 1.20226 1.15907 0.79218 0.84717 0.79925 1.90913 1.51482 1.16387 1.85580 1.42787 1.67613 1.21443 1.03245 1.18020 0.92371 1.00438 0.87177 1.20446 0.93732 0.94551 0.94755 1.20807 0.95012 1.04364 0.96377 1.21688 1.00828 1.02707 0.93644 1.21103 0.88801 0.96115 0.96384 1.20632 1.02388 0.99981 0.92486 1.67277 1.19814 1.11195 1.20854 1.21217 0.95599 0.95779 0.89712 1.20626 0.90972 1.01310 1.02827 0.93124 0.91783 0.92077 0.89558 0.92450 0.94917 0.93838 0.92668 0.76251 0.88896 0.91364 0.92002 0.84933 0.90806 0.90925 0.90742 0.90751 0.90443 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.62 5.84 -4.04 -0.02 1.60 16 3 N -0.61 -12.44 2.46 -180.80 -0.44 -12.88 16 4 C 0.26 6.68 5.16 -5.19 -0.03 6.66 16 5 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 9 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.70 14.49 6.54 -86.92 -0.57 13.92 16 14 O -0.57 -14.29 13.64 5.30 0.07 -14.22 16 15 N -0.70 -11.26 3.70 -14.13 -0.05 -11.31 16 16 C 0.12 1.92 5.77 -83.53 -0.48 1.44 16 17 C -0.03 -0.41 5.54 -104.14 -0.58 -0.99 16 18 C -0.11 -1.86 8.41 36.01 0.30 -1.56 16 19 C -0.17 -2.38 9.46 -39.47 -0.37 -2.75 16 20 C 0.11 1.57 6.78 -82.57 -0.56 1.01 16 21 C -0.10 -0.95 10.16 36.01 0.37 -0.58 16 22 N -0.48 -7.26 10.18 -5.59 -0.06 -7.32 16 23 C 0.12 1.76 6.80 -82.38 -0.56 1.20 16 24 C -0.10 -1.17 9.87 36.00 0.36 -0.82 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 29 H 0.06 0.72 6.46 -51.93 -0.34 0.39 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.40 5.21 6.59 -40.82 -0.27 4.94 16 34 H 0.09 1.85 7.33 -51.93 -0.38 1.46 16 35 H 0.07 1.26 6.53 -51.93 -0.34 0.92 16 36 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 37 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.89 7.48 -51.93 -0.39 0.50 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -33.26 354.87 -8.31 -41.57 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.71 Total: 3.65 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -2.19 Total: 4.14 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.18 Total: -57.03 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.07 Total: -14.22 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.26 -8.31 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455486539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.668 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds