Wall clock time and date at job start Tue Mar 31 2020 06:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47247 * 2 1 4 4 C 1.46504 * 119.99791 * 269.99911 * 3 2 1 5 5 C 1.50704 * 109.46924 * 269.99757 * 4 3 2 6 6 H 1.08001 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99910 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99810 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99938 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46895 * 60.00841 * 9 7 5 11 11 H 1.48503 * 109.46987 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47308 * 300.00635 * 9 7 5 13 13 C 1.34778 * 120.00386 * 89.99881 * 3 2 1 14 14 O 1.21579 * 120.00015 * 179.97438 * 13 3 2 15 15 N 1.34771 * 119.99640 * 359.97438 * 13 3 2 16 16 C 1.39980 * 119.99978 * 173.75563 * 15 13 3 17 17 C 1.39270 * 120.48416 * 304.94200 * 16 15 13 18 18 C 1.50703 * 120.82207 * 359.97438 * 17 16 15 19 19 C 1.38511 * 118.35806 * 180.24799 * 17 16 15 20 20 C 1.38266 * 119.23407 * 359.46545 * 19 17 16 21 21 C 1.50707 * 119.53997 * 180.27408 * 20 19 17 22 22 N 1.31853 * 120.92046 * 0.54809 * 20 19 17 23 23 C 1.31828 * 121.79505 * 359.72521 * 22 20 19 24 24 C 1.50688 * 119.66997 * 180.02562 * 23 22 20 25 25 H 1.09006 * 109.47117 * 300.00537 * 1 2 3 26 26 H 1.09004 * 109.46747 * 60.00038 * 1 2 3 27 27 H 1.08994 * 109.47372 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47168 * 239.99724 * 2 1 3 29 29 H 1.09004 * 109.46747 * 119.99962 * 2 1 3 30 30 H 1.08997 * 109.47260 * 29.99858 * 4 3 2 31 31 H 1.09003 * 109.47254 * 150.00125 * 4 3 2 32 32 H 0.97002 * 119.99787 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00586 * 353.75712 * 15 13 3 34 34 H 1.08995 * 109.47364 * 96.05932 * 18 17 16 35 35 H 1.08997 * 109.46956 * 336.05092 * 18 17 16 36 36 H 1.08997 * 109.46822 * 216.05971 * 18 17 16 37 37 H 1.08001 * 120.38028 * 179.70490 * 19 17 16 38 38 H 1.09001 * 109.46420 * 270.27298 * 21 20 19 39 39 H 1.08999 * 109.46908 * 30.27297 * 21 20 19 40 40 H 1.08996 * 109.47124 * 150.27459 * 21 20 19 41 41 H 1.09000 * 109.47244 * 269.08041 * 24 23 22 42 42 H 1.09003 * 109.47477 * 29.08237 * 24 23 22 43 43 H 1.09003 * 109.47520 * 149.08120 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1493 2.3895 -2.8780 8 7 3.3492 3.1255 -3.6182 9 14 5.9133 2.0953 -3.4175 10 1 6.1402 0.6385 -3.5948 11 1 6.1608 2.7954 -4.7035 12 1 6.8412 2.6186 -2.3829 13 6 2.2430 2.0166 1.1672 14 8 2.6488 3.1627 1.1671 15 7 2.0179 1.3815 2.3343 16 6 2.3734 1.9915 3.5430 17 6 3.6772 2.4326 3.7551 18 6 4.7321 2.2636 2.6922 19 6 3.9819 3.0254 4.9693 20 6 2.9874 3.1689 5.9191 21 6 3.3098 3.8185 7.2402 22 7 1.7622 2.7404 5.6872 23 6 1.4312 2.1660 4.5478 24 6 0.0161 1.6946 4.3335 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5818 1.6876 -2.0284 31 1 2.0956 3.1410 -1.1385 32 1 3.6753 3.5159 -4.4441 33 1 1.6095 0.5016 2.3369 34 1 4.8139 3.1827 2.1120 35 1 4.4550 1.4410 2.0329 36 1 5.6905 2.0447 3.1630 37 1 4.9838 3.3750 5.1703 38 1 3.6345 3.0572 7.9496 39 1 4.1067 4.5490 7.1010 40 1 2.4214 4.3189 7.6254 41 1 -0.0746 0.6579 4.6578 42 1 -0.6660 2.3174 4.9123 43 1 -0.2348 1.7674 3.2752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455486539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:45 Heat of formation + Delta-G solvation = -19.614580 kcal Electronic energy + Delta-G solvation = -24016.269481 eV Core-core repulsion = 20674.555720 eV Total energy + Delta-G solvation = -3341.713762 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.12876 -40.61736 -37.22148 -36.37148 -35.03125 -34.84333 -33.09420 -31.62292 -29.93546 -29.16035 -28.60251 -27.14381 -24.93320 -24.25502 -22.65985 -22.14128 -20.82188 -19.40794 -18.60341 -18.21046 -17.88050 -16.83218 -16.15737 -15.97251 -15.88611 -15.68330 -15.11132 -14.64585 -14.61861 -14.44800 -14.24530 -14.04841 -13.85564 -13.74170 -13.51701 -13.26146 -13.11925 -13.06825 -12.91991 -12.69089 -12.64499 -12.54499 -12.49998 -12.18150 -11.95794 -11.74665 -11.27357 -11.14477 -10.62085 -10.45413 -10.21501 -9.54668 -9.16392 -8.19786 -6.34164 0.04223 0.24386 1.37058 1.40872 1.47909 1.73856 2.21515 2.40044 2.71416 3.01265 3.10439 3.31891 3.63667 3.71309 4.05392 4.10264 4.25759 4.37553 4.39024 4.51469 4.55888 4.60818 4.64910 4.70791 4.74517 4.84675 4.85441 4.96623 4.97730 5.02634 5.14976 5.15281 5.21362 5.23780 5.30141 5.37693 5.47916 5.58623 5.79216 5.89710 6.06357 6.08986 6.74499 7.00396 7.07852 7.32846 7.69069 8.86619 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.004775 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.328857 B = 5862.461909 C = 6936.083889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.613 5.613 4 C 0.281 3.719 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.701 3.299 14 O -0.621 6.621 15 N -0.674 5.674 16 C 0.088 3.912 17 C -0.047 4.047 18 C -0.099 4.099 19 C -0.171 4.171 20 C 0.113 3.887 21 C -0.095 4.095 22 N -0.493 5.493 23 C 0.115 3.885 24 C -0.097 4.097 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.025 0.975 31 H -0.004 1.004 32 H 0.266 0.734 33 H 0.416 0.584 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.159 0.841 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.997 -7.792 18.346 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.023 4.023 3 N -0.347 5.347 4 C 0.159 3.841 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.403 3.597 14 O -0.500 6.500 15 N -0.328 5.328 16 C -0.009 4.009 17 C -0.056 4.056 18 C -0.155 4.155 19 C -0.191 4.191 20 C -0.025 4.025 21 C -0.152 4.152 22 N -0.205 5.205 23 C -0.025 4.025 24 C -0.155 4.155 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.043 0.957 31 H 0.014 0.986 32 H 0.075 0.925 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.176 0.824 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.358 -6.813 18.712 20.195 hybrid contribution 1.303 -0.183 -1.696 2.147 sum -2.055 -6.996 17.016 18.513 Atomic orbital electron populations 1.22188 0.94362 1.03686 1.01833 1.21701 0.95455 0.81475 1.03693 1.47439 1.67704 1.14955 1.04648 1.18610 0.95260 0.91193 0.78992 1.21664 0.97856 1.31831 1.06323 0.92886 1.25799 1.02102 0.94549 0.96463 1.70045 1.37731 1.34259 1.14814 0.85531 0.79368 0.78974 0.77317 1.18498 1.20524 1.20378 1.15999 0.78665 0.84163 0.80861 1.90873 1.53771 1.18889 1.86495 1.42343 1.66862 1.21685 1.01911 1.18255 0.93024 1.02248 0.87341 1.20612 0.93785 0.95674 0.95553 1.20635 0.97010 1.01686 0.96202 1.21979 1.02341 1.02054 0.92732 1.21801 0.88194 0.94821 0.97684 1.20751 1.03161 1.00697 0.90593 1.67421 1.20571 1.11670 1.20820 1.21657 0.96642 0.94988 0.89218 1.20702 0.89035 1.02999 1.02727 0.92360 0.93970 0.88311 0.90303 0.89244 0.95669 0.98616 0.92491 0.74341 0.92518 0.93386 0.89080 0.82382 0.88788 0.89055 0.90569 0.87956 0.89896 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 10.24 71.98 0.74 -3.10 16 2 C 0.10 2.94 5.84 86.38 0.50 3.44 16 3 N -0.61 -25.81 2.46 -844.20 -2.07 -27.88 16 4 C 0.28 15.08 5.16 85.63 0.44 15.52 16 5 C -0.54 -30.68 9.39 25.60 0.24 -30.44 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 9 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 10 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 C 0.70 29.90 6.54 179.06 1.17 31.08 16 14 O -0.62 -32.96 13.64 -3.96 -0.05 -33.02 16 15 N -0.67 -21.58 3.70 -316.87 -1.17 -22.75 16 16 C 0.09 2.85 5.77 38.23 0.22 3.07 16 17 C -0.05 -1.53 5.54 -19.55 -0.11 -1.64 16 18 C -0.10 -3.44 8.41 71.24 0.60 -2.84 16 19 C -0.17 -4.57 9.46 22.34 0.21 -4.36 16 20 C 0.11 2.86 6.78 42.56 0.29 3.15 16 21 C -0.09 -1.56 10.16 71.24 0.72 -0.83 16 22 N -0.49 -14.05 10.18 -171.60 -1.75 -15.80 16 23 C 0.11 3.31 6.80 42.70 0.29 3.60 16 24 C -0.10 -2.09 9.87 71.23 0.70 -1.39 16 25 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 2.47 8.07 -2.39 -0.02 2.45 16 29 H 0.09 2.06 6.46 -2.39 -0.02 2.05 16 30 H 0.03 1.37 8.07 -2.39 -0.02 1.35 16 31 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.42 10.19 6.59 -92.71 -0.61 9.58 16 34 H 0.06 2.38 7.33 -2.39 -0.02 2.36 16 35 H 0.05 1.82 6.53 -2.39 -0.02 1.80 16 36 H 0.09 2.50 8.13 -2.39 -0.02 2.48 16 37 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.57 7.48 -2.39 -0.02 1.55 16 Total: -1.00 -76.27 354.87 4.15 -72.13 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.40 Total: 20.12 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 6.49 Total: 16.29 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -4.71 Total: -122.22 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.05 Total: -33.02 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -76.27 4.15 -72.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455486539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.511 kcal (2) G-P(sol) polarization free energy of solvation -76.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds