Wall clock time and date at job start Tue Mar 31 2020 07:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47366 * 354.98220 * 3 2 1 5 5 C 1.34951 * 126.03633 * 124.99621 * 4 3 2 6 6 C 1.35317 * 107.74601 * 180.20718 * 5 4 3 7 7 C 1.39876 * 107.91922 * 359.64694 * 6 5 4 8 8 C 1.50697 * 125.89686 * 180.14134 * 7 6 5 9 9 N 1.46903 * 109.47225 * 94.73512 * 8 7 6 10 10 C 1.46900 * 110.99956 * 173.94480 * 9 8 7 11 11 C 1.52995 * 109.47161 * 190.00150 * 10 9 8 12 12 C 1.50697 * 109.47384 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99766 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00123 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00326 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99804 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47091 * 90.00308 * 16 14 12 18 18 H 1.48500 * 109.46956 * 209.99738 * 16 14 12 19 19 H 1.48497 * 109.47322 * 330.00032 * 16 14 12 20 20 C 1.46893 * 110.99799 * 297.89880 * 9 8 7 21 21 C 1.52994 * 109.47280 * 293.08427 * 20 9 8 22 22 O 1.42900 * 109.47019 * 68.26908 * 21 20 9 23 23 C 1.42898 * 113.99959 * 179.97438 * 22 21 20 24 24 N 1.30840 * 108.19879 * 0.36064 * 7 6 5 25 25 H 4.40640 * 5.51408 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.46843 * 234.98593 * 3 2 1 27 27 H 1.08993 * 109.47217 * 114.98770 * 3 2 1 28 28 H 1.07999 * 126.12560 * 359.95192 * 5 4 3 29 29 H 1.07999 * 126.04014 * 179.77140 * 6 5 4 30 30 H 1.09002 * 109.46909 * 214.73342 * 8 7 6 31 31 H 1.09001 * 109.47146 * 334.73107 * 8 7 6 32 32 H 1.09006 * 109.47328 * 309.99996 * 10 9 8 33 33 H 1.09000 * 109.47278 * 69.99942 * 10 9 8 34 34 H 1.08999 * 109.47174 * 299.99974 * 11 10 9 35 35 H 1.09000 * 109.47195 * 59.99741 * 11 10 9 36 36 H 0.96995 * 120.00046 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.47305 * 53.08764 * 20 9 8 38 38 H 1.09006 * 109.46866 * 173.08458 * 20 9 8 39 39 H 1.09002 * 109.47480 * 188.26837 * 21 20 9 40 40 H 1.08995 * 109.47470 * 308.26925 * 21 20 9 41 41 H 1.08997 * 109.47297 * 60.00063 * 23 22 21 42 42 H 1.09003 * 109.47406 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47446 * 300.00094 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3750 0.1208 5 6 3.9901 -1.9906 -0.7225 6 6 4.1857 -3.2491 -0.2655 7 6 3.4305 -3.4054 0.9015 8 6 3.3545 -4.6524 1.7443 9 7 4.3274 -4.5622 2.8412 10 6 4.1836 -5.6937 3.7669 11 6 5.0301 -5.4415 5.0161 12 6 4.8821 -6.6020 5.9660 13 1 4.2474 -7.4360 5.7049 14 6 5.5562 -6.5987 7.1687 15 7 6.3280 -5.5826 7.4873 16 14 5.3721 -8.0371 8.3464 17 1 6.4117 -9.0554 8.0504 18 1 5.5328 -7.5573 9.7425 19 1 4.0258 -8.6419 8.1826 20 6 5.6991 -4.4774 2.3225 21 6 6.0689 -5.7960 1.6406 22 8 5.2944 -5.9500 0.4496 23 6 5.5647 -7.1560 -0.2677 24 7 2.7980 -2.2836 1.1322 25 1 -1.0497 -0.0004 0.0002 26 1 3.0091 0.5905 0.8417 27 1 3.0092 0.4349 -0.9314 28 1 4.4349 -1.5577 -1.6063 29 1 4.8154 -3.9995 -0.7201 30 1 2.3503 -4.7515 2.1566 31 1 3.5816 -5.5221 1.1277 32 1 3.1369 -5.7989 4.0524 33 1 4.5205 -6.6080 3.2782 34 1 6.0768 -5.3364 4.7306 35 1 4.6933 -4.5273 5.5047 36 1 6.8024 -5.5805 8.3332 37 1 5.7647 -3.6638 1.6001 38 1 6.3879 -4.2885 3.1460 39 1 7.1289 -5.7889 1.3863 40 1 5.8633 -6.6253 2.3174 41 1 5.3489 -8.0137 0.3694 42 1 4.9369 -7.1979 -1.1578 43 1 6.6141 -7.1767 -0.5615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491707023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:40 Heat of formation + Delta-G solvation = 103.150625 kcal Electronic energy + Delta-G solvation = -23235.765542 eV Core-core repulsion = 19899.375279 eV Total energy + Delta-G solvation = -3336.390263 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00711 -38.57311 -36.30582 -34.88437 -33.06869 -31.97933 -29.98343 -29.89719 -29.25536 -27.21104 -26.17853 -24.93470 -23.78108 -22.12348 -20.97574 -19.64423 -19.07291 -18.52433 -16.83639 -16.53989 -16.37267 -16.09199 -15.48111 -14.99990 -14.50559 -14.43467 -14.34253 -14.18371 -13.57971 -13.16452 -13.06658 -12.75512 -12.29438 -12.12169 -11.97396 -11.74722 -11.56207 -11.33246 -10.94356 -10.86611 -10.82753 -10.66113 -10.54139 -10.48844 -10.17342 -9.86315 -9.39084 -9.27731 -9.07225 -8.98443 -8.35343 -8.28597 -7.45982 -5.95310 -3.97383 1.98708 2.14904 2.56471 3.07123 3.15230 3.34224 3.40831 3.44361 3.97230 4.03905 4.47659 4.62130 4.80167 4.90786 5.06273 5.18192 5.35948 5.40514 5.41642 5.54848 5.59319 5.64512 5.70294 5.72298 5.76508 6.00886 6.04902 6.07193 6.27446 6.39194 6.41506 6.54769 6.67509 6.95825 7.05585 7.15014 7.33057 7.33713 7.63319 7.66663 7.86851 7.96459 8.05455 8.16172 8.49057 9.10252 9.65993 11.16003 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.003706 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.059676 B = 7554.113617 C = 8673.990563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.209 4.209 3 C 0.253 3.747 4 N -0.385 5.385 5 C 0.036 3.964 6 C -0.248 4.248 7 C 0.100 3.900 8 C 0.121 3.879 9 N -0.525 5.525 10 C 0.059 3.941 11 C 0.029 3.971 12 C -0.520 4.520 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.058 3.942 21 C 0.018 3.982 22 O -0.379 6.379 23 C 0.027 3.973 24 N -0.275 5.275 25 H 0.220 0.780 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.168 0.832 29 H 0.153 0.847 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.016 0.984 35 H 0.025 0.975 36 H 0.260 0.740 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.038 0.962 42 H 0.079 0.921 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.919 7.002 -20.465 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.210 4.210 3 C 0.132 3.868 4 N -0.168 5.168 5 C -0.108 4.108 6 C -0.278 4.278 7 C -0.068 4.068 8 C -0.008 4.008 9 N -0.249 5.249 10 C -0.067 4.067 11 C -0.008 4.008 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.071 4.071 21 C -0.060 4.060 22 O -0.299 6.299 23 C -0.070 4.070 24 N -0.096 5.096 25 H 0.237 0.763 26 H 0.123 0.877 27 H 0.132 0.868 28 H 0.185 0.815 29 H 0.171 0.829 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.034 0.966 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.874 8.416 -19.367 21.672 hybrid contribution 0.799 -2.072 -0.249 2.235 sum -4.075 6.343 -19.617 21.015 Atomic orbital electron populations 1.24964 0.95931 0.97222 1.00251 1.22873 0.94356 1.02559 1.01180 1.18289 0.84613 0.79761 1.04156 1.48544 1.36522 1.11099 1.20677 1.22479 0.96665 0.94396 0.97229 1.21610 1.08773 0.97252 1.00151 1.22280 0.95117 0.94326 0.95056 1.20734 0.96990 0.91599 0.91494 1.62220 1.02636 1.45022 1.15006 1.22415 1.01182 0.89248 0.93898 1.19079 0.94334 0.97277 0.90155 1.21201 1.27616 1.04669 1.02412 0.92834 1.24984 0.95389 0.95927 0.97992 1.69973 1.29894 1.30172 1.23179 0.86625 0.78419 0.82696 0.80426 1.20800 1.21250 1.19892 1.22330 0.91579 0.94727 0.98439 1.23487 0.94600 1.01448 0.86425 1.87974 1.63247 1.40330 1.38308 1.22704 1.00008 0.87897 0.96416 1.77464 1.23648 0.99643 1.08868 0.76293 0.87717 0.86784 0.81484 0.82923 0.90829 0.89957 0.92102 0.95574 0.96600 0.95703 0.93064 0.90530 0.88653 0.93571 0.91669 0.94291 0.90197 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 19.25 29.55 0.57 -1.11 16 2 C -0.21 -2.36 13.52 -37.12 -0.50 -2.86 16 3 C 0.25 2.45 6.99 -6.83 -0.05 2.40 16 4 N -0.39 -5.19 3.65 -64.24 -0.23 -5.42 16 5 C 0.04 0.42 11.45 -17.22 -0.20 0.23 16 6 C -0.25 -3.46 9.03 -40.01 -0.36 -3.82 16 7 C 0.10 1.67 5.81 -82.40 -0.48 1.19 16 8 C 0.12 2.08 5.07 -4.98 -0.03 2.06 16 9 N -0.53 -10.14 4.73 -236.08 -1.12 -11.26 16 10 C 0.06 1.27 4.61 -3.83 -0.02 1.25 16 11 C 0.03 0.76 4.89 -27.89 -0.14 0.62 16 12 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 13 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 20 C 0.06 1.01 5.39 -3.83 -0.02 0.99 16 21 C 0.02 0.28 5.75 37.15 0.21 0.49 16 22 O -0.38 -5.25 5.57 -35.23 -0.20 -5.45 16 23 C 0.03 0.29 11.01 101.05 1.11 1.40 16 24 N -0.27 -4.80 12.39 33.67 0.42 -4.38 16 25 H 0.22 1.44 7.80 -54.10 -0.42 1.01 16 26 H 0.11 0.93 8.14 -51.92 -0.42 0.50 16 27 H 0.11 0.65 8.07 -51.93 -0.42 0.23 16 28 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.15 2.00 6.58 -52.49 -0.35 1.65 16 30 H 0.07 1.30 8.01 -51.93 -0.42 0.89 16 31 H 0.08 1.35 5.17 -51.93 -0.27 1.08 16 32 H 0.06 1.32 7.99 -51.93 -0.41 0.91 16 33 H 0.03 0.54 5.76 -51.93 -0.30 0.25 16 34 H 0.02 0.43 6.62 -51.93 -0.34 0.08 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.08 1.29 6.01 -51.93 -0.31 0.97 16 38 H 0.10 1.81 6.61 -51.93 -0.34 1.47 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.12 5.80 -51.93 -0.30 0.82 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -34.08 355.20 -6.75 -40.83 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.38 Total: 0.49 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -0.30 Total: -10.65 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.20 Total: -47.33 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.20 Total: -5.45 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.08 -6.75 -40.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491707023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.984 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds